RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 C7orf43Q8WVR3 580 aa8.81□□□□□ -1
VPS53-205ENST00000541903 JAKMIP1Q96N16 626 aaKnown RBP8.81□□□□□ -1
VPS53-205ENST00000541903 RTFDC1Q9BY42 306 aaPredicted RBP8.81□□□□□ -1
VPS53-205ENST00000541903 ARMT1Q9H993 441 aa8.81□□□□□ -1
VPS53-205ENST00000541903 PIM2Q9P1W9 311 aa8.81□□□□□ -1
VPS53-205ENST00000541903 CD2APQ9Y5K6 639 aa8.81□□□□□ -1
VPS53-205ENST00000541903 DOCK2Q92608 1830 aa8.81□□□□□ -1
VPS53-205ENST00000541903 DLEC1Q9Y238 1755 aa8.81□□□□□ -1
VPS53-205ENST00000541903 FAM205AQ6ZU69 1335 aa8.8□□□□□ -1
VPS53-205ENST00000541903 K7ELQ4 463 aaPredicted RBP8.8□□□□□ -1
VPS53-205ENST00000541903 APPP05067 770 aa8.8□□□□□ -1
VPS53-205ENST00000541903 LDHCP07864 332 aa8.8□□□□□ -1
VPS53-205ENST00000541903 SLC4A3P48751 1232 aa8.8□□□□□ -1
VPS53-205ENST00000541903 MCM2P49736 904 aa8.8□□□□□ -1
VPS53-205ENST00000541903 NEK4P51957 841 aa8.8□□□□□ -1
VPS53-205ENST00000541903 IMMTQ16891 758 aaKnown RBP8.8□□□□□ -1
VPS53-205ENST00000541903 DOK7Q18PE1 504 aa8.8□□□□□ -1
VPS53-205ENST00000541903 DALRD3Q5D0E6 543 aaKnown RBP8.8□□□□□ -1
VPS53-205ENST00000541903 MFSD14BQ5SR56 506 aa8.8□□□□□ -1
VPS53-205ENST00000541903 LCORLQ8N3X6 602 aa8.8□□□□□ -1
VPS53-205ENST00000541903 MIGA1Q8NAN2 632 aa8.8□□□□□ -1
VPS53-205ENST00000541903 FBXW7Q969H0 707 aa8.8□□□□□ -1
VPS53-205ENST00000541903 NSUN4Q96CB9 384 aaKnown RBP8.8□□□□□ -1
VPS53-205ENST00000541903 STRBPQ96SI9 672 aaKnown RBP8.8□□□□□ -1
VPS53-205ENST00000541903 SGIP1Q9BQI5 828 aa8.8□□□□□ -1
VPS53-205ENST00000541903 NOL10Q9BSC4 688 aaKnown RBP8.8□□□□□ -1
VPS53-205ENST00000541903 UPF3BQ9BZI7 483 aaKnown RBP8.8□□□□□ -1
VPS53-205ENST00000541903 NACAP1Q9BZK3 213 aa8.8□□□□□ -1
VPS53-205ENST00000541903 TM6SF1Q9BZW5 370 aa8.8□□□□□ -1
VPS53-205ENST00000541903 RPAP1Q9BWH6 1393 aaPredicted RBP8.8□□□□□ -1
VPS53-205ENST00000541903 MAST2Q6P0Q8 1798 aa8.8□□□□□ -1
VPS53-205ENST00000541903 SNED1Q8TER0 1413 aa8.8□□□□□ -1
VPS53-205ENST00000541903 PPIP5K2O43314 1243 aa8.79□□□□□ -1
VPS53-205ENST00000541903 CYP21A2P08686 494 aa8.79□□□□□ -1
VPS53-205ENST00000541903 CASTP20810 708 aaKnown RBP8.79□□□□□ -1
VPS53-205ENST00000541903 KCNA3P22001 575 aa8.79□□□□□ -1
VPS53-205ENST00000541903 GTF2IP78347 998 aa8.79□□□□□ -1
VPS53-205ENST00000541903 KIAA2012Q0VF49 1180 aa8.79□□□□□ -1
VPS53-205ENST00000541903 TSGA10IPQ3SY00 556 aa8.79□□□□□ -1
VPS53-205ENST00000541903 BLOC1S2Q6QNY1 142 aa8.79□□□□□ -1
VPS53-205ENST00000541903 PODNQ7Z5L7 613 aa8.79□□□□□ -1
VPS53-205ENST00000541903 ADGRA1Q86SQ6 560 aa8.79□□□□□ -1
VPS53-205ENST00000541903 SLF2Q8IX21 1173 aa8.79□□□□□ -1
VPS53-205ENST00000541903 PSMD1Q99460 953 aa8.79□□□□□ -1
VPS53-205ENST00000541903 DBNDD1Q9H9R9 158 aa8.79□□□□□ -1
VPS53-205ENST00000541903 SPON1Q9HCB6 807 aa8.79□□□□□ -1
VPS53-205ENST00000541903 SUGT1Q9Y2Z0 365 aa8.79□□□□□ -1
VPS53-205ENST00000541903 CYP46A1Q9Y6A2 500 aa8.79□□□□□ -1
VPS53-205ENST00000541903 SLC4A4Q9Y6R1 1079 aa8.79□□□□□ -1
VPS53-205ENST00000541903 MYH7P12883 1935 aa8.79□□□□□ -1
VPS53-205ENST00000541903 SLX4Q8IY92 1834 aa8.79□□□□□ -1
VPS53-205ENST00000541903 KIF13BQ9NQT8 1826 aa8.79□□□□□ -1
VPS53-205ENST00000541903 ZMYM6O95789 1325 aa8.79□□□□□ -1
VPS53-205ENST00000541903 PATL2C9JE40 543 aaKnown RBP8.78□□□□□ -1
VPS53-205ENST00000541903 FOXP2O15409 715 aa8.78□□□□□ -1
VPS53-205ENST00000541903 ECE2O60344 883 aa8.78□□□□□ -1
VPS53-205ENST00000541903 BAG3O95817 575 aa8.78□□□□□ -1
VPS53-205ENST00000541903 HSP90AA1P07900 732 aaKnown RBP8.78□□□□□ -1
VPS53-205ENST00000541903 PTGER2P43116 358 aa8.78□□□□□ -1
VPS53-205ENST00000541903 TDO2P48775 406 aa8.78□□□□□ -1
VPS53-205ENST00000541903 ALX1Q15699 326 aa8.78□□□□□ -1
VPS53-205ENST00000541903 AOC3Q16853 763 aa8.78□□□□□ -1
VPS53-205ENST00000541903 ADCK5Q3MIX3 580 aa8.78□□□□□ -1
VPS53-205ENST00000541903 TTLL5Q6EMB2 1281 aa8.78□□□□□ -1
VPS53-205ENST00000541903 CERS3Q8IU89 383 aa8.78□□□□□ -1
VPS53-205ENST00000541903 NEK1Q96PY6 1258 aa8.78□□□□□ -1
VPS53-205ENST00000541903 RIOK1Q9BRS2 568 aaKnown RBP8.78□□□□□ -1
VPS53-205ENST00000541903 CRNKL1Q9BZJ0 848 aaKnown RBP8.78□□□□□ -1
VPS53-205ENST00000541903 NAPBQ9H115 298 aa8.78□□□□□ -1
VPS53-205ENST00000541903 ZSWIM6Q9HCJ5 1215 aa8.78□□□□□ -1
VPS53-205ENST00000541903 PDRG1Q9NUG6 133 aa8.78□□□□□ -1
VPS53-205ENST00000541903 CACNA1SQ13698 1873 aa8.78□□□□□ -1
VPS53-205ENST00000541903 MYH13Q9UKX3 1938 aa8.78□□□□□ -1
VPS53-205ENST00000541903 MROH7-TTC4A0A0A0MT08 1334 aa8.78□□□□□ -1
VPS53-205ENST00000541903 ZNF213O14771 459 aa8.77□□□□□ -1.01
VPS53-205ENST00000541903 PRKAB2O43741 272 aa8.77□□□□□ -1.01
VPS53-205ENST00000541903 CD2BP2O95400 341 aaKnown RBP8.77□□□□□ -1.01
VPS53-205ENST00000541903 FGAP02671 866 aa8.77□□□□□ -1.01
VPS53-205ENST00000541903 HMGB1P09429 215 aaKnown RBP8.77□□□□□ -1.01
VPS53-205ENST00000541903 HAND2P61296 217 aa8.77□□□□□ -1.01
VPS53-205ENST00000541903 DYNLL1P63167 89 aaKnown RBP8.77□□□□□ -1.01
VPS53-205ENST00000541903 RUFY3Q7L099 469 aa8.77□□□□□ -1.01
VPS53-205ENST00000541903 IFNL3Q8IZI9 196 aa8.77□□□□□ -1.01
VPS53-205ENST00000541903 LARGE2Q8N3Y3 721 aa8.77□□□□□ -1.01
VPS53-205ENST00000541903 ZNF384Q8TF68 577 aa8.77□□□□□ -1.01
VPS53-205ENST00000541903 VPS33BQ9H267 617 aa8.77□□□□□ -1.01
VPS53-205ENST00000541903 TAOK3Q9H2K8 898 aa8.77□□□□□ -1.01
VPS53-205ENST00000541903 EPB41L4AQ9HCS5 686 aaPredicted RBP8.77□□□□□ -1.01
VPS53-205ENST00000541903 AATFQ9NY61 560 aaKnown RBP eCLIP8.77□□□□□ -1.01
VPS53-205ENST00000541903 USP17L3A6NCW0 530 aa8.76□□□□□ -1.01
VPS53-205ENST00000541903 USP17L4A6NCW7 530 aa8.76□□□□□ -1.01
VPS53-205ENST00000541903 GSG1L2A8MUP6 293 aa8.76□□□□□ -1.01
VPS53-205ENST00000541903 E7EWF7 191 aa8.76□□□□□ -1.01
VPS53-205ENST00000541903 PLCG2P16885 1265 aa8.76□□□□□ -1.01
VPS53-205ENST00000541903 RPS6KB1P23443 525 aa8.76□□□□□ -1.01
VPS53-205ENST00000541903 AK2P54819 239 aa8.76□□□□□ -1.01
VPS53-205ENST00000541903 FKBP1AP62942 108 aaKnown RBP8.76□□□□□ -1.01
VPS53-205ENST00000541903 TRDNQ13061 729 aa8.76□□□□□ -1.01
VPS53-205ENST00000541903 ANKRD1Q15327 319 aa8.76□□□□□ -1.01
VPS53-205ENST00000541903 DIXDC1Q155Q3 683 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms