RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 LETM1O95202 739 aaPredicted RBP16.85■□□□□ 0.29
SFSWAP-210ENST00000541286 SCARF1Q14162 830 aa16.85■□□□□ 0.29
SFSWAP-210ENST00000541286 RIPOR2Q9Y4F9 1068 aa16.85■□□□□ 0.29
SFSWAP-210ENST00000541286 PLA2G12BQ9BX93 195 aa16.85■□□□□ 0.29
SFSWAP-210ENST00000541286 A0A1B0GUL7 405 aa16.84■□□□□ 0.29
SFSWAP-210ENST00000541286 CHRNDQ07001 517 aa16.84■□□□□ 0.29
SFSWAP-210ENST00000541286 NYXQ9GZU5 481 aa16.84■□□□□ 0.29
SFSWAP-210ENST00000541286 TAF6LQ9Y6J9 622 aa16.84■□□□□ 0.29
SFSWAP-210ENST00000541286 KIF20AO95235 890 aa16.84■□□□□ 0.29
SFSWAP-210ENST00000541286 ST5P78524 1137 aa16.84■□□□□ 0.29
SFSWAP-210ENST00000541286 LRMPQ12912 555 aa16.84■□□□□ 0.29
SFSWAP-210ENST00000541286 TNNI3KQ59H18 835 aa16.84■□□□□ 0.29
SFSWAP-210ENST00000541286 DRC7Q8IY82 874 aa16.84■□□□□ 0.29
SFSWAP-210ENST00000541286 RPGRQ92834 1020 aaKnown RBP16.84■□□□□ 0.29
SFSWAP-210ENST00000541286 KCNF1Q9H3M0 494 aa16.84■□□□□ 0.29
SFSWAP-210ENST00000541286 FPGT-TNNI3KV9GXZ4 949 aa16.84■□□□□ 0.29
SFSWAP-210ENST00000541286 AOX1Q06278 1338 aa16.83■□□□□ 0.29
SFSWAP-210ENST00000541286 DNAJC2Q99543 621 aaKnown RBP16.83■□□□□ 0.29
SFSWAP-210ENST00000541286 HSP90B1P14625 803 aaKnown RBP16.83■□□□□ 0.28
SFSWAP-210ENST00000541286 CREB3L3Q68CJ9 461 aa16.83■□□□□ 0.28
SFSWAP-210ENST00000541286 LRRC2Q9BYS8 371 aa16.83■□□□□ 0.28
SFSWAP-210ENST00000541286 TPCN1Q9ULQ1 816 aa16.83■□□□□ 0.28
SFSWAP-210ENST00000541286 MYH3P11055 1940 aa16.83■□□□□ 0.28
SFSWAP-210ENST00000541286 GYG1P46976 350 aa16.83■□□□□ 0.28
SFSWAP-210ENST00000541286 RPS8P62241 208 aaKnown RBP16.83■□□□□ 0.28
SFSWAP-210ENST00000541286 DDX46Q7L014 1031 aaKnown RBP16.83■□□□□ 0.28
SFSWAP-210ENST00000541286 ZBTB9Q96C00 473 aa16.83■□□□□ 0.28
SFSWAP-210ENST00000541286 DDX11Q96FC9 970 aa16.83■□□□□ 0.28
SFSWAP-210ENST00000541286 MTMR6Q9Y217 621 aa16.83■□□□□ 0.28
SFSWAP-210ENST00000541286 ANKRD18AQ8IVF6 992 aa16.82■□□□□ 0.28
SFSWAP-210ENST00000541286 A0A0D9SFI3 127 aa16.82■□□□□ 0.28
SFSWAP-210ENST00000541286 PTGS1P23219 599 aa16.82■□□□□ 0.28
SFSWAP-210ENST00000541286 CDC37L1Q7L3B6 337 aa16.82■□□□□ 0.28
SFSWAP-210ENST00000541286 CERS3Q8IU89 383 aa16.82■□□□□ 0.28
SFSWAP-210ENST00000541286 CEP126Q9P2H0 1117 aa16.82■□□□□ 0.28
SFSWAP-210ENST00000541286 MINPP1Q9UNW1 487 aa16.82■□□□□ 0.28
SFSWAP-210ENST00000541286 CCDC171Q6TFL3 1326 aa16.82■□□□□ 0.28
SFSWAP-210ENST00000541286 CASZ1Q86V15 1759 aa16.81■□□□□ 0.28
SFSWAP-210ENST00000541286 BCAMP50895 628 aa16.81■□□□□ 0.28
SFSWAP-210ENST00000541286 BLOC1S2Q6QNY1 142 aa16.81■□□□□ 0.28
SFSWAP-210ENST00000541286 C2CD5Q86YS7 1000 aa16.81■□□□□ 0.28
SFSWAP-210ENST00000541286 NLGN2Q8NFZ4 835 aa16.81■□□□□ 0.28
SFSWAP-210ENST00000541286 EVI5LQ96CN4 794 aa16.81■□□□□ 0.28
SFSWAP-210ENST00000541286 TCHHQ07283 1943 aa16.81■□□□□ 0.28
SFSWAP-210ENST00000541286 RIC1Q4ADV7 1423 aa16.81■□□□□ 0.28
SFSWAP-210ENST00000541286 IGHMBP2P38935 993 aaKnown RBP16.81■□□□□ 0.28
SFSWAP-210ENST00000541286 SLC10A5Q5PT55 438 aa16.81■□□□□ 0.28
SFSWAP-210ENST00000541286 CCDC125Q86Z20 511 aa16.81■□□□□ 0.28
SFSWAP-210ENST00000541286 ST7Q9NRC1 585 aa16.81■□□□□ 0.28
SFSWAP-210ENST00000541286 LAMB2P55268 1798 aa16.81■□□□□ 0.28
SFSWAP-210ENST00000541286 SF3B3Q15393 1217 aaKnown RBP16.81■□□□□ 0.28
SFSWAP-210ENST00000541286 FBXW7Q969H0 707 aa16.81■□□□□ 0.28
SFSWAP-210ENST00000541286 NRBP1Q9UHY1 535 aa16.81■□□□□ 0.28
SFSWAP-210ENST00000541286 RIMBP2O15034 1052 aa16.8■□□□□ 0.28
SFSWAP-210ENST00000541286 PHKA1P46020 1223 aa16.8■□□□□ 0.28
SFSWAP-210ENST00000541286 ANKIB1Q9P2G1 1089 aa16.8■□□□□ 0.28
SFSWAP-210ENST00000541286 TTC41PQ6P2S7 1318 aa16.8■□□□□ 0.28
SFSWAP-210ENST00000541286 FLAD1Q8NFF5 587 aa16.8■□□□□ 0.28
SFSWAP-210ENST00000541286 XAGE2Q96GT9 111 aa16.8■□□□□ 0.28
SFSWAP-210ENST00000541286 SRGNP10124 158 aa16.79■□□□□ 0.28
SFSWAP-210ENST00000541286 DPEP1P16444 411 aa16.79■□□□□ 0.28
SFSWAP-210ENST00000541286 VPS53Q5VIR6 699 aa16.79■□□□□ 0.28
SFSWAP-210ENST00000541286 CCDC129Q6ZRS4 1044 aa16.79■□□□□ 0.28
SFSWAP-210ENST00000541286 FAM184AQ8NB25 1140 aa16.79■□□□□ 0.28
SFSWAP-210ENST00000541286 ANKRD31Q8N7Z5 1873 aa16.79■□□□□ 0.28
SFSWAP-210ENST00000541286 KDM4AO75164 1064 aa16.79■□□□□ 0.28
SFSWAP-210ENST00000541286 BICD2Q8TD16 824 aa16.79■□□□□ 0.28
SFSWAP-210ENST00000541286 CACNA1SQ13698 1873 aa16.79■□□□□ 0.28
SFSWAP-210ENST00000541286 ZNF589Q86UQ0 364 aaPredicted RBP16.79■□□□□ 0.28
SFSWAP-210ENST00000541286 ERC1Q8IUD2 1116 aa16.79■□□□□ 0.28
SFSWAP-210ENST00000541286 VGLL2Q8N8G2 317 aa16.79■□□□□ 0.28
SFSWAP-210ENST00000541286 SLC27A2O14975 620 aa16.78■□□□□ 0.28
SFSWAP-210ENST00000541286 LIG1P18858 919 aa16.78■□□□□ 0.28
SFSWAP-210ENST00000541286 IL15P40933 162 aaPredicted RBP16.78■□□□□ 0.28
SFSWAP-210ENST00000541286 KRT85P78386 507 aa16.78■□□□□ 0.28
SFSWAP-210ENST00000541286 FKBP4Q02790 459 aaKnown RBP eCLIP16.78■□□□□ 0.28
SFSWAP-210ENST00000541286 C21orf2O43822 256 aa16.78■□□□□ 0.28
SFSWAP-210ENST00000541286 GORABQ5T7V8 394 aa16.78■□□□□ 0.28
SFSWAP-210ENST00000541286 TTC6Q86TZ1 520 aa16.78■□□□□ 0.28
SFSWAP-210ENST00000541286 LUZP1Q86V48 1076 aa16.78■□□□□ 0.28
SFSWAP-210ENST00000541286 ZSWIM6Q9HCJ5 1215 aa16.78■□□□□ 0.28
SFSWAP-210ENST00000541286 PDE8BO95263 885 aa16.77■□□□□ 0.28
SFSWAP-210ENST00000541286 GPSM2P81274 684 aa16.77■□□□□ 0.28
SFSWAP-210ENST00000541286 ST3GAL1Q11201 340 aa16.77■□□□□ 0.28
SFSWAP-210ENST00000541286 NCBP1Q09161 790 aaKnown RBP16.77■□□□□ 0.28
SFSWAP-210ENST00000541286 KIAA1524Q8TCG1 905 aa16.77■□□□□ 0.28
SFSWAP-210ENST00000541286 ZSCAN31Q96LW9 406 aaPredicted RBP16.77■□□□□ 0.28
SFSWAP-210ENST00000541286 SEC62Q99442 399 aaKnown RBP16.77■□□□□ 0.28
SFSWAP-210ENST00000541286 COL24A1Q17RW2 1714 aa16.77■□□□□ 0.28
SFSWAP-210ENST00000541286 JAK2O60674 1132 aa16.77■□□□□ 0.27
SFSWAP-210ENST00000541286 PTGER2P43116 358 aa16.77■□□□□ 0.27
SFSWAP-210ENST00000541286 RNF20Q5VTR2 975 aa16.77■□□□□ 0.27
SFSWAP-210ENST00000541286 SH2B1Q9NRF2 756 aaPredicted RBP16.77■□□□□ 0.27
SFSWAP-210ENST00000541286 DACT1Q9NYF0 836 aa16.77■□□□□ 0.27
SFSWAP-210ENST00000541286 HDAC5Q9UQL6 1122 aa16.77■□□□□ 0.27
SFSWAP-210ENST00000541286 CCDC192P0DO97 292 aa16.76■□□□□ 0.27
SFSWAP-210ENST00000541286 GTF2F1P35269 517 aaKnown RBP eCLIP16.76■□□□□ 0.279e-11■■■■■ 43.8
SFSWAP-210ENST00000541286 NECTIN1Q15223 517 aa16.76■□□□□ 0.27
SFSWAP-210ENST00000541286 SPATA32Q96LK8 384 aa16.76■□□□□ 0.27
SFSWAP-210ENST00000541286 BRIP1Q9BX63 1249 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms