RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 ZAP70P43403 619 aa11.38□□□□□ -0.59
DDX55-208ENST00000541259 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.38□□□□□ -0.59
DDX55-208ENST00000541259 DNAJC2Q99543 621 aaKnown RBP11.38□□□□□ -0.59
DDX55-208ENST00000541259 HAUS7Q99871 368 aa11.38□□□□□ -0.59
DDX55-208ENST00000541259 COA1Q9GZY4 146 aa11.38□□□□□ -0.59
DDX55-208ENST00000541259 ANTXR1Q9H6X2 564 aa11.38□□□□□ -0.59
DDX55-208ENST00000541259 BMP2KQ9NSY1 1161 aaPredicted RBP11.38□□□□□ -0.59
DDX55-208ENST00000541259 GOLIM4O00461 696 aa11.37□□□□□ -0.59
DDX55-208ENST00000541259 ECE2O60344 883 aa11.37□□□□□ -0.59
DDX55-208ENST00000541259 CYP2E1P05181 493 aaPredicted RBP11.37□□□□□ -0.59
DDX55-208ENST00000541259 SDSP20132 328 aa11.37□□□□□ -0.59
DDX55-208ENST00000541259 CHAF1AQ13111 956 aaPredicted RBP11.37□□□□□ -0.59
DDX55-208ENST00000541259 GPR162Q16538 588 aa11.37□□□□□ -0.59
DDX55-208ENST00000541259 TBC1D9Q6ZT07 1266 aa11.37□□□□□ -0.59
DDX55-208ENST00000541259 LARGE2Q8N3Y3 721 aa11.37□□□□□ -0.59
DDX55-208ENST00000541259 SPATA5Q8NB90 893 aa11.37□□□□□ -0.59
DDX55-208ENST00000541259 GNL3LQ9NVN8 582 aaKnown RBP11.37□□□□□ -0.59
DDX55-208ENST00000541259 LTBP3Q9NS15 1303 aa11.36□□□□□ -0.59
DDX55-208ENST00000541259 YDJCA8MPS7 323 aa11.36□□□□□ -0.59
DDX55-208ENST00000541259 TRIM6-TRIM34B2RNG4 842 aa11.36□□□□□ -0.59
DDX55-208ENST00000541259 G3V3G9 751 aa11.36□□□□□ -0.59
DDX55-208ENST00000541259 FRAT2O75474 233 aaPredicted RBP11.36□□□□□ -0.59
DDX55-208ENST00000541259 RILPL2Q969X0 211 aa11.36□□□□□ -0.59
DDX55-208ENST00000541259 PIH1D3Q9NQM4 214 aaKnown RBP11.36□□□□□ -0.59
DDX55-208ENST00000541259 PAG1Q9NWQ8 432 aa11.36□□□□□ -0.59
DDX55-208ENST00000541259 DENND2AQ9ULE3 1009 aa11.36□□□□□ -0.59
DDX55-208ENST00000541259 MYH2Q9UKX2 1941 aa11.36□□□□□ -0.59
DDX55-208ENST00000541259 SEMA3EO15041 775 aa11.35□□□□□ -0.59
DDX55-208ENST00000541259 GTF2IP78347 998 aa11.35□□□□□ -0.59
DDX55-208ENST00000541259 GRIK5Q16478 980 aa11.35□□□□□ -0.59
DDX55-208ENST00000541259 BMP2KLQ5H9B9 411 aa11.35□□□□□ -0.59
DDX55-208ENST00000541259 MXD3Q9BW11 206 aa11.35□□□□□ -0.59
DDX55-208ENST00000541259 MFRPQ9BY79 579 aa11.35□□□□□ -0.59
DDX55-208ENST00000541259 VPS33BQ9H267 617 aa11.35□□□□□ -0.59
DDX55-208ENST00000541259 CHGBP05060 677 aa11.34□□□□□ -0.59
DDX55-208ENST00000541259 SLFNL1Q499Z3 407 aa11.34□□□□□ -0.59
DDX55-208ENST00000541259 PODNQ7Z5L7 613 aa11.34□□□□□ -0.59
DDX55-208ENST00000541259 FBXW7Q969H0 707 aa11.34□□□□□ -0.59
DDX55-208ENST00000541259 EVI5LQ96CN4 794 aa11.34□□□□□ -0.59
DDX55-208ENST00000541259 TSHZ2Q9NRE2 1034 aa11.34□□□□□ -0.59
DDX55-208ENST00000541259 TIAM2Q8IVF5 1701 aa11.34□□□□□ -0.59
DDX55-208ENST00000541259 FAM205AQ6ZU69 1335 aa11.34□□□□□ -0.59
DDX55-208ENST00000541259 TTLL5Q6EMB2 1281 aa11.33□□□□□ -0.6
DDX55-208ENST00000541259 NIM1KQ8IY84 436 aa11.33□□□□□ -0.6
DDX55-208ENST00000541259 CNTROBQ8N137 903 aa11.33□□□□□ -0.6
DDX55-208ENST00000541259 CERS5Q8N5B7 392 aa11.33□□□□□ -0.6
DDX55-208ENST00000541259 DCBLD2Q96PD2 775 aa11.33□□□□□ -0.6
DDX55-208ENST00000541259 ABCF2Q9UG63 623 aa11.33□□□□□ -0.6
DDX55-208ENST00000541259 ZNRF3Q9ULT6 936 aa11.33□□□□□ -0.6
DDX55-208ENST00000541259 ADAMTSL1Q8N6G6 1762 aa11.33□□□□□ -0.6
DDX55-208ENST00000541259 PDS5AQ29RF7 1337 aaKnown RBP11.33□□□□□ -0.6
DDX55-208ENST00000541259 RAD17O75943 681 aa11.32□□□□□ -0.6
DDX55-208ENST00000541259 LMNB1P20700 586 aa11.32□□□□□ -0.6
DDX55-208ENST00000541259 DACT2Q5SW24 774 aa11.32□□□□□ -0.6
DDX55-208ENST00000541259 KBTBD3Q8NAB2 608 aa11.32□□□□□ -0.6
DDX55-208ENST00000541259 WDR66Q8TBY9 1149 aa11.32□□□□□ -0.6
DDX55-208ENST00000541259 JDP2Q8WYK2 163 aa11.32□□□□□ -0.6
DDX55-208ENST00000541259 FSD1Q9BTV5 496 aa11.32□□□□□ -0.6
DDX55-208ENST00000541259 MAST2Q6P0Q8 1798 aa11.31□□□□□ -0.6
DDX55-208ENST00000541259 USP17L3A6NCW0 530 aa11.31□□□□□ -0.6
DDX55-208ENST00000541259 USP17L4A6NCW7 530 aa11.31□□□□□ -0.6
DDX55-208ENST00000541259 FZD9O00144 591 aa11.31□□□□□ -0.6
DDX55-208ENST00000541259 PSMD14O00487 310 aa11.31□□□□□ -0.6
DDX55-208ENST00000541259 GRIN3BO60391 1043 aa11.31□□□□□ -0.6
DDX55-208ENST00000541259 IDH1O75874 414 aaKnown RBP11.31□□□□□ -0.6
DDX55-208ENST00000541259 PRDX5P30044 214 aa11.31□□□□□ -0.6
DDX55-208ENST00000541259 CXCL9Q07325 125 aa11.31□□□□□ -0.6
DDX55-208ENST00000541259 TTF1Q15361 905 aaPredicted RBP11.31□□□□□ -0.6
DDX55-208ENST00000541259 MFSD14BQ5SR56 506 aa11.31□□□□□ -0.6
DDX55-208ENST00000541259 STRIP1Q5VSL9 837 aa11.31□□□□□ -0.6
DDX55-208ENST00000541259 USP17L1Q7RTZ2 530 aa11.31□□□□□ -0.6
DDX55-208ENST00000541259 ZNF384Q8TF68 577 aa11.31□□□□□ -0.6
DDX55-208ENST00000541259 RAI14Q9P0K7 980 aa11.31□□□□□ -0.6
DDX55-208ENST00000541259 LRP2BPQ9P2M1 347 aa11.31□□□□□ -0.6
DDX55-208ENST00000541259 SALL1Q9NSC2 1324 aa11.31□□□□□ -0.6
DDX55-208ENST00000541259 F8W031 263 aaPredicted RBP11.3□□□□□ -0.6
DDX55-208ENST00000541259 VIL1P09327 827 aaKnown RBP11.3□□□□□ -0.6
DDX55-208ENST00000541259 CHMLP26374 656 aa11.3□□□□□ -0.6
DDX55-208ENST00000541259 C9orf131Q5VYM1 1079 aa11.3□□□□□ -0.6
DDX55-208ENST00000541259 ERICH6Q7L0X2 663 aa11.3□□□□□ -0.6
DDX55-208ENST00000541259 RNF181Q9P0P0 153 aa11.3□□□□□ -0.6
DDX55-208ENST00000541259 ZNF541Q9H0D2 1346 aa11.3□□□□□ -0.6
DDX55-208ENST00000541259 CDK5RAP2Q96SN8 1893 aa11.29□□□□□ -0.6
DDX55-208ENST00000541259 TCRBV5S4A2TA0A5A2 114 aa11.29□□□□□ -0.6
DDX55-208ENST00000541259 RNF113AO15541 343 aaKnown RBP11.29□□□□□ -0.6
DDX55-208ENST00000541259 CDC45O75419 566 aa11.29□□□□□ -0.6
DDX55-208ENST00000541259 LDHBP07195 334 aaKnown RBP11.29□□□□□ -0.6
DDX55-208ENST00000541259 PDE6AP16499 860 aa11.29□□□□□ -0.6
DDX55-208ENST00000541259 ADD2P35612 726 aa11.29□□□□□ -0.6
DDX55-208ENST00000541259 ATN1P54259 1190 aaPredicted RBP11.29□□□□□ -0.6
DDX55-208ENST00000541259 MECOMQ03112 1051 aa11.29□□□□□ -0.6
DDX55-208ENST00000541259 NMIQ13287 307 aaPredicted RBP11.29□□□□□ -0.6
DDX55-208ENST00000541259 SLC9C2Q5TAH2 1124 aa11.29□□□□□ -0.6
DDX55-208ENST00000541259 CIAPIN1Q6FI81 312 aa11.29□□□□□ -0.6
DDX55-208ENST00000541259 MAGEB6Q8N7X4 407 aa11.29□□□□□ -0.6
DDX55-208ENST00000541259 SP7Q8TDD2 431 aaPredicted RBP11.29□□□□□ -0.6
DDX55-208ENST00000541259 TBC1D22AQ8WUA7 517 aa11.29□□□□□ -0.6
DDX55-208ENST00000541259 NSUN4Q96CB9 384 aaKnown RBP11.29□□□□□ -0.6
DDX55-208ENST00000541259 FAM227BQ96M60 508 aa11.29□□□□□ -0.6
DDX55-208ENST00000541259 SEC62Q99442 399 aaKnown RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms