RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 MRPL42Q9Y6G3 142 aaKnown RBP7.36□□□□□ -1.23
PRKDC-209ENST00000540819 ENPP3O14638 875 aa7.35□□□□□ -1.23
PRKDC-209ENST00000540819 CAPN12Q6ZSI9 719 aa7.35□□□□□ -1.23
PRKDC-209ENST00000540819 MCF2L2Q86YR7 1114 aa7.35□□□□□ -1.23
PRKDC-209ENST00000540819 SMC5Q8IY18 1101 aa7.35□□□□□ -1.23
PRKDC-209ENST00000540819 DZIP1LQ8IYY4 767 aaKnown RBP7.35□□□□□ -1.23
PRKDC-209ENST00000540819 DDX41Q9UJV9 622 aaKnown RBP7.35□□□□□ -1.23
PRKDC-209ENST00000540819 KCNMB2Q9Y691 235 aa7.35□□□□□ -1.23
PRKDC-209ENST00000540819 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.34□□□□□ -1.23
PRKDC-209ENST00000540819 F8W735 103 aaPredicted RBP7.34□□□□□ -1.23
PRKDC-209ENST00000540819 FGRP09769 529 aa7.34□□□□□ -1.23
PRKDC-209ENST00000540819 FILIP1Q7Z7B0 1213 aa7.34□□□□□ -1.23
PRKDC-209ENST00000540819 TMX1Q9H3N1 280 aa7.34□□□□□ -1.23
PRKDC-209ENST00000540819 PCMTD2Q9NV79 361 aa7.34□□□□□ -1.23
PRKDC-209ENST00000540819 IFT57Q9NWB7 429 aa7.34□□□□□ -1.23
PRKDC-209ENST00000540819 UBAP1LF5GYI3 381 aa7.33□□□□□ -1.24
PRKDC-209ENST00000540819 DNAJC6O75061 913 aa7.33□□□□□ -1.24
PRKDC-209ENST00000540819 PEX14O75381 377 aa7.33□□□□□ -1.24
PRKDC-209ENST00000540819 EIF3JO75822 258 aaKnown RBP7.33□□□□□ -1.24
PRKDC-209ENST00000540819 GLB1P16278 677 aa7.33□□□□□ -1.24
PRKDC-209ENST00000540819 FSTP19883 344 aa7.33□□□□□ -1.24
PRKDC-209ENST00000540819 PLEKHG6Q3KR16 790 aa7.33□□□□□ -1.24
PRKDC-209ENST00000540819 TTC39BQ5VTQ0 682 aaPredicted RBP7.33□□□□□ -1.24
PRKDC-209ENST00000540819 NBPF6Q5VWK0 638 aa7.33□□□□□ -1.24
PRKDC-209ENST00000540819 ALG1LQ6GMV1 187 aa7.33□□□□□ -1.24
PRKDC-209ENST00000540819 C16orf46Q6P387 395 aa7.33□□□□□ -1.24
PRKDC-209ENST00000540819 ALKBH8Q96BT7 664 aaKnown RBP7.33□□□□□ -1.24
PRKDC-209ENST00000540819 NBPF4Q96M43 638 aa7.33□□□□□ -1.24
PRKDC-209ENST00000540819 IRF2BPLQ9H1B7 796 aa7.33□□□□□ -1.24
PRKDC-209ENST00000540819 SPC25Q9HBM1 224 aa7.33□□□□□ -1.24
PRKDC-209ENST00000540819 RNF19AQ9NV58 838 aa7.33□□□□□ -1.24
PRKDC-209ENST00000540819 FNDC3AQ9Y2H6 1198 aaKnown RBP7.33□□□□□ -1.24
PRKDC-209ENST00000540819 KRTAP9-6A0A140TA67 174 aa7.32□□□□□ -1.24
PRKDC-209ENST00000540819 HOXD8P13378 290 aaPredicted RBP7.32□□□□□ -1.24
PRKDC-209ENST00000540819 MPSTP25325 297 aa7.32□□□□□ -1.24
PRKDC-209ENST00000540819 SETDB1Q15047 1291 aa7.32□□□□□ -1.24
PRKDC-209ENST00000540819 ALKBH2Q6NS38 261 aa7.32□□□□□ -1.24
PRKDC-209ENST00000540819 ETFBKMTQ8IXQ9 262 aa7.32□□□□□ -1.24
PRKDC-209ENST00000540819 MKL1Q969V6 931 aa7.32□□□□□ -1.24
PRKDC-209ENST00000540819 CRELD1Q96HD1 420 aa7.32□□□□□ -1.24
PRKDC-209ENST00000540819 FAM129BQ96TA1 746 aa7.32□□□□□ -1.24
PRKDC-209ENST00000540819 WWC3Q9ULE0 1092 aa7.32□□□□□ -1.24
PRKDC-209ENST00000540819 TRIM33Q9UPN9 1127 aa7.32□□□□□ -1.24
PRKDC-209ENST00000540819 PRKAB1Q9Y478 270 aa7.32□□□□□ -1.24
PRKDC-209ENST00000540819 IGHA2P01877 340 aa7.31□□□□□ -1.24
PRKDC-209ENST00000540819 GNA15P30679 374 aa7.31□□□□□ -1.24
PRKDC-209ENST00000540819 RACK1P63244 317 aaKnown RBP7.31□□□□□ -1.24
PRKDC-209ENST00000540819 HYAL2Q12891 473 aa7.31□□□□□ -1.24
PRKDC-209ENST00000540819 NAA30Q147X3 362 aaPredicted RBP7.31□□□□□ -1.24
PRKDC-209ENST00000540819 CCAR1Q8IX12 1150 aaKnown RBP7.31□□□□□ -1.24
PRKDC-209ENST00000540819 CKAP2LQ8IYA6 745 aa7.31□□□□□ -1.24
PRKDC-209ENST00000540819 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.31□□□□□ -1.24
PRKDC-209ENST00000540819 SAP130Q9H0E3 1048 aa7.31□□□□□ -1.24
PRKDC-209ENST00000540819 FAM177BA6PVY3 158 aa7.3□□□□□ -1.24
PRKDC-209ENST00000540819 LINC01387J3KSC0 135 aa7.3□□□□□ -1.24
PRKDC-209ENST00000540819 U2SURPO15042 1029 aaKnown RBP7.3□□□□□ -1.24
PRKDC-209ENST00000540819 GSC2O15499 205 aa7.3□□□□□ -1.24
PRKDC-209ENST00000540819 SMNDC1O75940 238 aaKnown RBP eCLIP7.3□□□□□ -1.24
PRKDC-209ENST00000540819 PTPN12Q05209 780 aaKnown RBP7.3□□□□□ -1.24
PRKDC-209ENST00000540819 ZNF394Q53GI3 561 aa7.3□□□□□ -1.24
PRKDC-209ENST00000540819 CEP135Q66GS9 1140 aa7.3□□□□□ -1.24
PRKDC-209ENST00000540819 USP48Q86UV5 1035 aa7.3□□□□□ -1.24
PRKDC-209ENST00000540819 AGGF1Q8N302 714 aaeCLIP7.3□□□□□ -1.24
PRKDC-209ENST00000540819 OR13H1Q8NG92 308 aa7.3□□□□□ -1.24
PRKDC-209ENST00000540819 FRMD6Q96NE9 622 aa7.3□□□□□ -1.24
PRKDC-209ENST00000540819 STOML1Q9UBI4 398 aa7.3□□□□□ -1.24
PRKDC-209ENST00000540819 RAXQ9Y2V3 346 aa7.3□□□□□ -1.24
PRKDC-209ENST00000540819 PPP1R12AO14974 1030 aaPredicted RBP7.29□□□□□ -1.24
PRKDC-209ENST00000540819 GPR182O15218 404 aa7.29□□□□□ -1.24
PRKDC-209ENST00000540819 S100BP04271 92 aaPredicted RBP7.29□□□□□ -1.24
PRKDC-209ENST00000540819 ATF4P18848 351 aaPredicted RBP7.29□□□□□ -1.24
PRKDC-209ENST00000540819 SSTR4P31391 388 aa7.29□□□□□ -1.24
PRKDC-209ENST00000540819 GJA8P48165 433 aa7.29□□□□□ -1.24
PRKDC-209ENST00000540819 ENOX2Q16206 610 aaKnown RBP7.29□□□□□ -1.24
PRKDC-209ENST00000540819 PLEKHG4Q58EX7 1191 aa7.29□□□□□ -1.24
PRKDC-209ENST00000540819 FAM117BQ6P1L5 589 aa7.29□□□□□ -1.24
PRKDC-209ENST00000540819 RPUSD2Q8IZ73 545 aaKnown RBP7.29□□□□□ -1.24
PRKDC-209ENST00000540819 DDX56Q9NY93 547 aaKnown RBP7.29□□□□□ -1.24
PRKDC-209ENST00000540819 HMGB1P1B2RPK0 211 aaPredicted RBP7.28□□□□□ -1.24
PRKDC-209ENST00000540819 FZD6O60353 706 aa7.28□□□□□ -1.24
PRKDC-209ENST00000540819 CDC27P30260 824 aa7.28□□□□□ -1.24
PRKDC-209ENST00000540819 CD68P34810 354 aaPredicted RBP7.28□□□□□ -1.24
PRKDC-209ENST00000540819 SERINC3Q13530 473 aa7.28□□□□□ -1.24
PRKDC-209ENST00000540819 TRIP4Q15650 581 aaPredicted RBP7.28□□□□□ -1.24
PRKDC-209ENST00000540819 HS2ST1Q7LGA3 356 aa7.28□□□□□ -1.24
PRKDC-209ENST00000540819 FBF1Q8TES7 1133 aa7.28□□□□□ -1.24
PRKDC-209ENST00000540819 CEP41Q9BYV8 373 aa7.28□□□□□ -1.24
PRKDC-209ENST00000540819 LACRTQ9GZZ8 138 aa7.28□□□□□ -1.24
PRKDC-209ENST00000540819 PCDHGB7Q9Y5F8 929 aa7.28□□□□□ -1.24
PRKDC-209ENST00000540819 AK5Q9Y6K8 562 aa7.28□□□□□ -1.24
PRKDC-209ENST00000540819 DHX15O43143 795 aaKnown RBP7.27□□□□□ -1.25
PRKDC-209ENST00000540819 CDC25BP30305 580 aa7.27□□□□□ -1.25
PRKDC-209ENST00000540819 ZAP70P43403 619 aa7.27□□□□□ -1.25
PRKDC-209ENST00000540819 AAMPQ13685 434 aa7.27□□□□□ -1.25
PRKDC-209ENST00000540819 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.27□□□□□ -1.25
PRKDC-209ENST00000540819 UBA5Q9GZZ9 404 aa7.27□□□□□ -1.25
PRKDC-209ENST00000540819 CCDC87Q9NVE4 849 aa7.27□□□□□ -1.25
PRKDC-209ENST00000540819 PNMA6FA0A0J9YX94 578 aa7.26□□□□□ -1.25
PRKDC-209ENST00000540819 IGLV1-40P01703 118 aa7.26□□□□□ -1.25
PRKDC-209ENST00000540819 CTSHP09668 335 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms