RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 LEO1Q8WVC0 666 aaPredicted RBP16.21■□□□□ 0.19
RTN3-210ENST00000540798 NCOA5Q9HCD5 579 aaKnown RBP16.21■□□□□ 0.19
RTN3-210ENST00000540798 GPHNQ9NQX3 736 aaPredicted RBP16.21■□□□□ 0.19
RTN3-210ENST00000540798 NARFQ9UHQ1 456 aa16.21■□□□□ 0.19
RTN3-210ENST00000540798 ADD1P35611 737 aaKnown RBP16.21■□□□□ 0.18
RTN3-210ENST00000540798 CCT2P78371 535 aaKnown RBP16.21■□□□□ 0.18
RTN3-210ENST00000540798 MAP3K12Q12852 859 aa16.21■□□□□ 0.18
RTN3-210ENST00000540798 KIF3AQ9Y496 699 aa16.21■□□□□ 0.18
RTN3-210ENST00000540798 CACNA1SQ13698 1873 aa16.21■□□□□ 0.18
RTN3-210ENST00000540798 CARMIL3Q8ND23 1372 aa16.2■□□□□ 0.18
RTN3-210ENST00000540798 FDPSP14324 419 aaKnown RBP16.2■□□□□ 0.18
RTN3-210ENST00000540798 BCAMP50895 628 aa16.2■□□□□ 0.18
RTN3-210ENST00000540798 BSDC1Q9NW68 430 aaPredicted RBP16.2■□□□□ 0.18
RTN3-210ENST00000540798 ECM29Q5VYK3 1845 aa16.2■□□□□ 0.18
RTN3-210ENST00000540798 PNPLA7Q6ZV29 1317 aa16.2■□□□□ 0.18
RTN3-210ENST00000540798 TBC1D9BQ66K14 1250 aa16.2■□□□□ 0.18
RTN3-210ENST00000540798 RGS22Q8NE09 1264 aa16.2■□□□□ 0.18
RTN3-210ENST00000540798 PATL2C9JE40 543 aaKnown RBP16.19■□□□□ 0.18
RTN3-210ENST00000540798 H3BQV1 296 aa16.19■□□□□ 0.18
RTN3-210ENST00000540798 IFFO2Q5TF58 517 aa16.19■□□□□ 0.18
RTN3-210ENST00000540798 EPB41L4AQ9HCS5 686 aaPredicted RBP16.19■□□□□ 0.18
RTN3-210ENST00000540798 COL1A1P02452 1464 aaPredicted RBP16.19■□□□□ 0.18
RTN3-210ENST00000540798 RALYLQ86SE5 291 aaKnown RBP16.19■□□□□ 0.18
RTN3-210ENST00000540798 MAGEB6Q8N7X4 407 aa16.19■□□□□ 0.18
RTN3-210ENST00000540798 NKX2-3Q8TAU0 364 aa16.19■□□□□ 0.18
RTN3-210ENST00000540798 AIDAQ96BJ3 306 aa16.19■□□□□ 0.18
RTN3-210ENST00000540798 SPATA32Q96LK8 384 aa16.19■□□□□ 0.18
RTN3-210ENST00000540798 USP21Q9UK80 565 aa16.19■□□□□ 0.18
RTN3-210ENST00000540798 NAP1L5Q96NT1 182 aaPredicted RBP16.19■□□□□ 0.18
RTN3-210ENST00000540798 KCNQ4P56696 695 aa16.18■□□□□ 0.18
RTN3-210ENST00000540798 UBE4AQ14139 1066 aa16.18■□□□□ 0.18
RTN3-210ENST00000540798 HS1BP3Q53T59 392 aa16.18■□□□□ 0.18
RTN3-210ENST00000540798 ANKRD18AQ8IVF6 992 aa16.18■□□□□ 0.18
RTN3-210ENST00000540798 UVSSAQ2YD98 709 aa16.18■□□□□ 0.18
RTN3-210ENST00000540798 ATL3Q6DD88 541 aa16.18■□□□□ 0.18
RTN3-210ENST00000540798 CYB5R4Q7L1T6 521 aa16.18■□□□□ 0.18
RTN3-210ENST00000540798 MYH13Q9UKX3 1938 aa16.18■□□□□ 0.18
RTN3-210ENST00000540798 KLF18A0A0U1RQI7 1052 aa16.17■□□□□ 0.18
RTN3-210ENST00000540798 SH2B2O14492 632 aaPredicted RBP16.17■□□□□ 0.18
RTN3-210ENST00000540798 IFNL3Q8IZI9 196 aa16.17■□□□□ 0.18
RTN3-210ENST00000540798 TRIM44Q96DX7 344 aaPredicted RBP16.17■□□□□ 0.18
RTN3-210ENST00000540798 ESPNB1AK53 854 aa16.17■□□□□ 0.18
RTN3-210ENST00000540798 MBD4O95243 580 aa16.17■□□□□ 0.18
RTN3-210ENST00000540798 CLCN1P35523 988 aa16.17■□□□□ 0.18
RTN3-210ENST00000540798 PGBD1Q96JS3 809 aa16.17■□□□□ 0.18
RTN3-210ENST00000540798 NYXQ9GZU5 481 aa16.17■□□□□ 0.18
RTN3-210ENST00000540798 TFIP11Q9UBB9 837 aaKnown RBP16.17■□□□□ 0.18
RTN3-210ENST00000540798 DENND2AQ9ULE3 1009 aa16.17■□□□□ 0.18
RTN3-210ENST00000540798 TNRC6CQ9HCJ0 1690 aaKnown RBP16.17■□□□□ 0.18
RTN3-210ENST00000540798 GSG1L2A8MUP6 293 aa16.17■□□□□ 0.18
RTN3-210ENST00000540798 GNAT2P19087 354 aa16.17■□□□□ 0.18
RTN3-210ENST00000540798 CFAP45Q9UL16 551 aa16.17■□□□□ 0.18
RTN3-210ENST00000540798 ZBTB22O15209 634 aa16.16■□□□□ 0.18
RTN3-210ENST00000540798 DHX16O60231 1041 aaKnown RBP16.16■□□□□ 0.18
RTN3-210ENST00000540798 LIG1P18858 919 aa16.16■□□□□ 0.18
RTN3-210ENST00000540798 TRDNQ13061 729 aa16.16■□□□□ 0.18
RTN3-210ENST00000540798 BCL11BQ9C0K0 894 aaPredicted RBP16.16■□□□□ 0.18
RTN3-210ENST00000540798 ANGEL1Q9UNK9 670 aaKnown RBP16.16■□□□□ 0.18
RTN3-210ENST00000540798 MINPP1Q9UNW1 487 aa16.16■□□□□ 0.18
RTN3-210ENST00000540798 NEDD4P46934 1319 aa16.16■□□□□ 0.18
RTN3-210ENST00000540798 RBM43Q6ZSC3 357 aaKnown RBP16.16■□□□□ 0.18
RTN3-210ENST00000540798 KIAA1551Q9HCM1 1747 aa16.15■□□□□ 0.18
RTN3-210ENST00000540798 MAST2Q6P0Q8 1798 aa16.15■□□□□ 0.18
RTN3-210ENST00000540798 GOLGA8BA8MQT2 603 aa16.15■□□□□ 0.18
RTN3-210ENST00000540798 TMEM87BQ96K49 555 aa16.15■□□□□ 0.18
RTN3-210ENST00000540798 ARMT1Q9H993 441 aa16.15■□□□□ 0.18
RTN3-210ENST00000540798 RCOR1Q9UKL0 485 aa16.15■□□□□ 0.18
RTN3-210ENST00000540798 TACC3Q9Y6A5 838 aa16.15■□□□□ 0.18
RTN3-210ENST00000540798 NID2Q14112 1375 aa16.15■□□□□ 0.18
RTN3-210ENST00000540798 ONECUT3O60422 494 aaPredicted RBP16.15■□□□□ 0.18
RTN3-210ENST00000540798 IGDCC4Q8TDY8 1250 aa16.15■□□□□ 0.18
RTN3-210ENST00000540798 APPP05067 770 aa16.14■□□□□ 0.18
RTN3-210ENST00000540798 SGMS1Q86VZ5 419 aa16.14■□□□□ 0.18
RTN3-210ENST00000540798 LCORLQ8N3X6 602 aa16.14■□□□□ 0.18
RTN3-210ENST00000540798 RNF214Q8ND24 703 aa16.14■□□□□ 0.18
RTN3-210ENST00000540798 SRP68Q9UHB9 627 aaKnown RBP16.14■□□□□ 0.18
RTN3-210ENST00000540798 GIMAP6Q6P9H5 292 aa16.14■□□□□ 0.17
RTN3-210ENST00000540798 SMIM5Q71RC9 77 aa16.14■□□□□ 0.17
RTN3-210ENST00000540798 CELF1Q92879 486 aaKnown RBP16.14■□□□□ 0.17
RTN3-210ENST00000540798 CCNL1Q9UK58 526 aaPredicted RBP16.14■□□□□ 0.17
RTN3-210ENST00000540798 PDS5AQ29RF7 1337 aaKnown RBP16.14■□□□□ 0.17
RTN3-210ENST00000540798 AMIGO3Q86WK7 504 aa16.14■□□□□ 0.17
RTN3-210ENST00000540798 GNPATO15228 680 aa16.13■□□□□ 0.17
RTN3-210ENST00000540798 SETDB2Q96T68 719 aa16.13■□□□□ 0.17
RTN3-210ENST00000540798 DDX19AQ9NUU7 478 aaKnown RBP16.13■□□□□ 0.17
RTN3-210ENST00000540798 NAP1L2Q9ULW6 460 aaPredicted RBP16.13■□□□□ 0.17
RTN3-210ENST00000540798 STAG1Q8WVM7 1258 aa16.13■□□□□ 0.17
RTN3-210ENST00000540798 NAPBQ9H115 298 aa16.13■□□□□ 0.17
RTN3-210ENST00000540798 LY9Q9HBG7 655 aa16.13■□□□□ 0.17
RTN3-210ENST00000540798 GNL3LQ9NVN8 582 aaKnown RBP16.13■□□□□ 0.17
RTN3-210ENST00000540798 UBR3Q6ZT12 1888 aa16.12■□□□□ 0.17
RTN3-210ENST00000540798 WTIPA6NIX2 430 aaPredicted RBP16.12■□□□□ 0.17
RTN3-210ENST00000540798 B4E1Z4 1266 aa16.12■□□□□ 0.17
RTN3-210ENST00000540798 GYG1P46976 350 aa16.12■□□□□ 0.17
RTN3-210ENST00000540798 FBXO33Q7Z6M2 555 aa16.12■□□□□ 0.17
RTN3-210ENST00000540798 FAM84BQ96KN1 310 aaPredicted RBP16.12■□□□□ 0.17
RTN3-210ENST00000540798 GJD4Q96KN9 370 aaPredicted RBP16.12■□□□□ 0.17
RTN3-210ENST00000540798 NUP62CLQ9H1M0 184 aa16.12■□□□□ 0.17
RTN3-210ENST00000540798 CNNM2Q9H8M5 875 aa16.12■□□□□ 0.17
RTN3-210ENST00000540798 LIFRP42702 1097 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms