RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 ERC1Q8IUD2 1116 aa10.94□□□□□ -0.66
CTNNA1-243ENST00000540387 GIMAP7Q8NHV1 300 aa10.94□□□□□ -0.66
CTNNA1-243ENST00000540387 DDX19AQ9NUU7 478 aaKnown RBP10.94□□□□□ -0.66
CTNNA1-243ENST00000540387 GNL3LQ9NVN8 582 aaKnown RBP10.94□□□□□ -0.66
CTNNA1-243ENST00000540387 FAN1Q9Y2M0 1017 aa10.94□□□□□ -0.66
CTNNA1-243ENST00000540387 SOS1Q07889 1333 aaPredicted RBP10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 SGSM2O43147 1006 aa10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 ANXA1P04083 346 aa10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 GNL2Q13823 731 aaKnown RBP10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 NAIF1Q69YI7 327 aaPredicted RBP10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 GBP6Q6ZN66 633 aa10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 PTF1AQ7RTS3 328 aa10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 STK31Q9BXU1 1019 aa10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 BCL9O00512 1426 aa10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 FANCGO15287 622 aa10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 CAVIN2O95810 425 aa10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 SNRPA1P09661 255 aaKnown RBP10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 LIG3P49916 1009 aa10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 NBPF9Q3BBW0 867 aa10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 FBXW10Q5XX13 1052 aa10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 TTC19Q6DKK2 380 aaPredicted RBP10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 CPLX2Q6PUV4 134 aaKnown RBP10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 STAG1Q8WVM7 1258 aa10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 LARP6Q9BRS8 491 aaKnown RBP10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 TACO1Q9BSH4 297 aaKnown RBP10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 WNK3Q9BYP7 1800 aa10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 SIPA1L3O60292 1781 aaPredicted RBP10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 KDM3BQ7LBC6 1761 aa10.93□□□□□ -0.66
CTNNA1-243ENST00000540387 DTNBO60941 627 aa10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 N4BP1O75113 896 aaKnown RBP10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 JPH2Q9BR39 696 aaPredicted RBP10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 OSBPL5Q9H0X9 879 aaPredicted RBP10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 CHPF2Q9P2E5 772 aa10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 PARP3Q9Y6F1 533 aa10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 TOGARAM1Q9Y4F4 1720 aa10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 NEBLO76041 1014 aa10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 SSR1P43307 286 aaKnown RBP10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 KRT85P78386 507 aa10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 MCM6Q14566 821 aa10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 TRIM65Q6PJ69 517 aa10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 C11orf57Q6ZUT1 292 aaPredicted RBP10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 NBPF11Q86T75 865 aa10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 ANKRD44Q8N8A2 993 aa10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 FAM107BQ9H098 131 aa10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 PHAXQ9H814 394 aaKnown RBP10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 SLC24A3Q9HC58 644 aa10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 VPS37CA5D8V6 355 aaPredicted RBP10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 CCDC151A5D8V7 595 aa10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 GJB2P29033 226 aa10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 ELF1P32519 619 aa10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 KCNJ6P48051 423 aa10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 POTEAQ6S8J7 498 aa10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 RSRC2Q7L4I2 434 aaKnown RBP10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 CNNM3Q8NE01 707 aa10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 BORCS6Q96GS4 357 aa10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 BICC1Q9H694 974 aaKnown RBP10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 A1CFQ9NQ94 594 aaKnown RBP10.92□□□□□ -0.66
CTNNA1-243ENST00000540387 PIP4K2AP48426 406 aaPredicted RBP10.91□□□□□ -0.66
CTNNA1-243ENST00000540387 PDE1AP54750 535 aa10.91□□□□□ -0.66
CTNNA1-243ENST00000540387 PROSER3Q2NL68 480 aa10.91□□□□□ -0.66
CTNNA1-243ENST00000540387 SLC4A9Q96Q91 983 aa10.91□□□□□ -0.66
CTNNA1-243ENST00000540387 GOLGA6L4A6NEF3 574 aa10.91□□□□□ -0.66
CTNNA1-243ENST00000540387 NR1I2O75469 434 aa10.91□□□□□ -0.66
CTNNA1-243ENST00000540387 PAX7P23759 505 aa10.91□□□□□ -0.66
CTNNA1-243ENST00000540387 RXRBP28702 533 aa10.91□□□□□ -0.66
CTNNA1-243ENST00000540387 AK2P54819 239 aa10.91□□□□□ -0.66
CTNNA1-243ENST00000540387 SCRN1Q12765 414 aa10.91□□□□□ -0.66
CTNNA1-243ENST00000540387 ARMCX5Q6P1M9 558 aa10.91□□□□□ -0.66
CTNNA1-243ENST00000540387 RUFY3Q7L099 469 aa10.91□□□□□ -0.66
CTNNA1-243ENST00000540387 RABGGTAQ92696 567 aa10.91□□□□□ -0.66
CTNNA1-243ENST00000540387 BSDC1Q9NW68 430 aaPredicted RBP10.91□□□□□ -0.66
CTNNA1-243ENST00000540387 THSD7AQ9UPZ6 1657 aa10.9□□□□□ -0.66
CTNNA1-243ENST00000540387 FLIIQ13045 1269 aa10.9□□□□□ -0.66
CTNNA1-243ENST00000540387 PDIA6Q15084 440 aa10.9□□□□□ -0.66
CTNNA1-243ENST00000540387 ZKSCAN8Q15776 578 aaPredicted RBP10.9□□□□□ -0.66
CTNNA1-243ENST00000540387 VPS53Q5VIR6 699 aa10.9□□□□□ -0.66
CTNNA1-243ENST00000540387 JAKMIP3Q5VZ66 844 aa10.9□□□□□ -0.66
CTNNA1-243ENST00000540387 TTC14Q96N46 770 aa10.9□□□□□ -0.66
CTNNA1-243ENST00000540387 OSBPL3Q9H4L5 887 aa10.9□□□□□ -0.66
CTNNA1-243ENST00000540387 IMPACTQ9P2X3 320 aa10.9□□□□□ -0.66
CTNNA1-243ENST00000540387 DBF4Q9UBU7 674 aaPredicted RBP10.9□□□□□ -0.66
CTNNA1-243ENST00000540387 LIMCH1Q9UPQ0 1083 aa10.9□□□□□ -0.66
CTNNA1-243ENST00000540387 ATP10DQ9P241 1426 aa10.9□□□□□ -0.66
CTNNA1-243ENST00000540387 BECN2A8MW95 431 aa10.9□□□□□ -0.67
CTNNA1-243ENST00000540387 CHMLP26374 656 aa10.9□□□□□ -0.67
CTNNA1-243ENST00000540387 IRX1P78414 480 aaPredicted RBP10.9□□□□□ -0.67
CTNNA1-243ENST00000540387 NEDD9Q14511 834 aa10.9□□□□□ -0.67
CTNNA1-243ENST00000540387 BRD3Q15059 726 aa10.9□□□□□ -0.67
CTNNA1-243ENST00000540387 FAM173BQ6P4H8 233 aa10.9□□□□□ -0.67
CTNNA1-243ENST00000540387 KRT27Q7Z3Y8 459 aa10.9□□□□□ -0.67
CTNNA1-243ENST00000540387 CCDC150Q8NCX0 1101 aa10.9□□□□□ -0.67
CTNNA1-243ENST00000540387 F6X3S4 739 aa10.89□□□□□ -0.67
CTNNA1-243ENST00000540387 EIF3JO75822 258 aaKnown RBP10.89□□□□□ -0.67
CTNNA1-243ENST00000540387 IFIT2P09913 472 aaKnown RBP10.89□□□□□ -0.67
CTNNA1-243ENST00000540387 MYL6BP14649 208 aa10.89□□□□□ -0.67
CTNNA1-243ENST00000540387 GPTP24298 496 aa10.89□□□□□ -0.67
CTNNA1-243ENST00000540387 PPP2R3AQ06190 1150 aa10.89□□□□□ -0.67
CTNNA1-243ENST00000540387 HDXQ7Z353 690 aa10.89□□□□□ -0.67
CTNNA1-243ENST00000540387 DNAJC10Q8IXB1 793 aa10.89□□□□□ -0.67
CTNNA1-243ENST00000540387 MCM8Q9UJA3 840 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms