RNA–Protein interactions for RNA: ENST00000537750.5

SYNE1-236, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-236ENST00000537750 ANO1Q5XXA6 986 aa17.2■□□□□ 0.34
SYNE1-236ENST00000537750 KBTBD3Q8NAB2 608 aa17.2■□□□□ 0.34
SYNE1-236ENST00000537750 GOLGA5Q8TBA6 731 aa17.2■□□□□ 0.34
SYNE1-236ENST00000537750 EXOC4Q96A65 974 aa17.2■□□□□ 0.34
SYNE1-236ENST00000537750 KIFC2Q96AC6 838 aa17.2■□□□□ 0.34
SYNE1-236ENST00000537750 ATG3Q9NT62 314 aa17.2■□□□□ 0.34
SYNE1-236ENST00000537750 AMOTL2Q9Y2J4 779 aa17.2■□□□□ 0.34
SYNE1-236ENST00000537750 RRP15Q9Y3B9 282 aaKnown RBP17.2■□□□□ 0.34
SYNE1-236ENST00000537750 DDX58O95786 925 aaKnown RBP17.2■□□□□ 0.34
SYNE1-236ENST00000537750 SYKP43405 635 aa17.2■□□□□ 0.34
SYNE1-236ENST00000537750 SRLQ86TD4 932 aa17.2■□□□□ 0.34
SYNE1-236ENST00000537750 RABGGTAQ92696 567 aa17.2■□□□□ 0.34
SYNE1-236ENST00000537750 MYD88Q99836 296 aa17.2■□□□□ 0.34
SYNE1-236ENST00000537750 PDE11AQ9HCR9 933 aa17.2■□□□□ 0.34
SYNE1-236ENST00000537750 VPS18Q9P253 973 aa17.2■□□□□ 0.34
SYNE1-236ENST00000537750 NEURL1BA8MQ27 555 aa17.19■□□□□ 0.34
SYNE1-236ENST00000537750 RNMTO43148 476 aaKnown RBP17.19■□□□□ 0.34
SYNE1-236ENST00000537750 HSPD1P10809 573 aaKnown RBP17.19■□□□□ 0.34
SYNE1-236ENST00000537750 GCKRQ14397 625 aa17.19■□□□□ 0.34
SYNE1-236ENST00000537750 AKAP4Q5JQC9 854 aa17.19■□□□□ 0.34
SYNE1-236ENST00000537750 FOXR1Q6PIV2 292 aa17.19■□□□□ 0.34
SYNE1-236ENST00000537750 CWC15Q9P013 229 aaKnown RBP17.19■□□□□ 0.34
SYNE1-236ENST00000537750 LAMA4Q16363 1823 aa17.19■□□□□ 0.34
SYNE1-236ENST00000537750 CCDC12Q8WUD4 166 aaPredicted RBP17.19■□□□□ 0.34
SYNE1-236ENST00000537750 GOLGA1Q92805 767 aa17.19■□□□□ 0.34
SYNE1-236ENST00000537750 TUBE1Q9UJT0 475 aa17.19■□□□□ 0.34
SYNE1-236ENST00000537750 N4BP1O75113 896 aaKnown RBP17.18■□□□□ 0.34
SYNE1-236ENST00000537750 ACTN2P35609 894 aa17.18■□□□□ 0.34
SYNE1-236ENST00000537750 RFX5P48382 616 aaPredicted RBP17.18■□□□□ 0.34
SYNE1-236ENST00000537750 HAND2P61296 217 aa17.18■□□□□ 0.34
SYNE1-236ENST00000537750 PDE4BQ07343 736 aa17.18■□□□□ 0.34
SYNE1-236ENST00000537750 PDIA6Q15084 440 aa17.18■□□□□ 0.34
SYNE1-236ENST00000537750 FCHSD1Q86WN1 690 aa17.18■□□□□ 0.34
SYNE1-236ENST00000537750 SUGCTQ9HAC7 445 aa17.18■□□□□ 0.34
SYNE1-236ENST00000537750 COPRSQ9NQ92 184 aa17.18■□□□□ 0.34
SYNE1-236ENST00000537750 PUF60Q9UHX1 559 aaKnown RBP17.18■□□□□ 0.34
SYNE1-236ENST00000537750 KDM3BQ7LBC6 1761 aa17.18■□□□□ 0.34
SYNE1-236ENST00000537750 MED1Q15648 1581 aaPredicted RBP17.18■□□□□ 0.34
SYNE1-236ENST00000537750 CDC27P30260 824 aa17.18■□□□□ 0.34
SYNE1-236ENST00000537750 TXLNAP40222 546 aa17.18■□□□□ 0.34
SYNE1-236ENST00000537750 MTF1Q14872 753 aa17.18■□□□□ 0.34
SYNE1-236ENST00000537750 FOXP4Q8IVH2 680 aaPredicted RBP17.18■□□□□ 0.34
SYNE1-236ENST00000537750 NEUROD6Q96NK8 337 aa17.18■□□□□ 0.34
SYNE1-236ENST00000537750 RGPD8O14715 1765 aaPredicted RBP17.18■□□□□ 0.34
SYNE1-236ENST00000537750 PIP4K2AP48426 406 aaPredicted RBP17.18■□□□□ 0.34
SYNE1-236ENST00000537750 WWC2Q6AWC2 1192 aa17.18■□□□□ 0.34
SYNE1-236ENST00000537750 AIFM3Q96NN9 605 aa17.18■□□□□ 0.34
SYNE1-236ENST00000537750 CLIC6Q96NY7 704 aa17.18■□□□□ 0.34
SYNE1-236ENST00000537750 DDX21Q9NR30 783 aaKnown RBP eCLIP17.18■□□□□ 0.34
SYNE1-236ENST00000537750 A0A0U1RQJ8 604 aa17.17■□□□□ 0.34
SYNE1-236ENST00000537750 DHX16O60231 1041 aaKnown RBP17.17■□□□□ 0.34
SYNE1-236ENST00000537750 NOP2P46087 812 aaKnown RBP17.17■□□□□ 0.34
SYNE1-236ENST00000537750 TC2NQ8N9U0 490 aa17.17■□□□□ 0.34
SYNE1-236ENST00000537750 ATRIPQ8WXE1 791 aa17.17■□□□□ 0.34
SYNE1-236ENST00000537750 DSCC1Q9BVC3 393 aa17.17■□□□□ 0.34
SYNE1-236ENST00000537750 MRPL44Q9H9J2 332 aaKnown RBP17.17■□□□□ 0.34
SYNE1-236ENST00000537750 SH3TC1Q8TE82 1336 aa17.17■□□□□ 0.34
SYNE1-236ENST00000537750 MAP2K7O14733 419 aa17.17■□□□□ 0.34
SYNE1-236ENST00000537750 SHC4Q6S5L8 630 aa17.17■□□□□ 0.34
SYNE1-236ENST00000537750 KLF18A0A0U1RQI7 1052 aa17.16■□□□□ 0.34
SYNE1-236ENST00000537750 CCDC151A5D8V7 595 aa17.16■□□□□ 0.34
SYNE1-236ENST00000537750 FOXN1O15353 648 aa17.16■□□□□ 0.34
SYNE1-236ENST00000537750 TFRCP02786 760 aaKnown RBP17.16■□□□□ 0.34
SYNE1-236ENST00000537750 BMP6P22004 513 aa17.16■□□□□ 0.34
SYNE1-236ENST00000537750 KIF23Q02241 960 aaPredicted RBP17.16■□□□□ 0.34
SYNE1-236ENST00000537750 NEXNQ0ZGT2 675 aa17.16■□□□□ 0.34
SYNE1-236ENST00000537750 PSD3Q9NYI0 1048 aa17.16■□□□□ 0.34
SYNE1-236ENST00000537750 TBX2Q13207 712 aaPredicted RBP17.16■□□□□ 0.34
SYNE1-236ENST00000537750 UBE3BQ7Z3V4 1068 aa17.16■□□□□ 0.34
SYNE1-236ENST00000537750 XAGE3Q8WTP9 111 aa17.16■□□□□ 0.34
SYNE1-236ENST00000537750 LZTFL1Q9NQ48 299 aa17.16■□□□□ 0.34
SYNE1-236ENST00000537750 DIP2BQ9P265 1576 aa17.16■□□□□ 0.34
SYNE1-236ENST00000537750 GOLGA8BA8MQT2 603 aa17.15■□□□□ 0.34
SYNE1-236ENST00000537750 TIMM10P62072 90 aa17.15■□□□□ 0.34
SYNE1-236ENST00000537750 SLC39A14Q15043 492 aa17.15■□□□□ 0.34
SYNE1-236ENST00000537750 LONRF3Q496Y0 759 aa17.15■□□□□ 0.34
SYNE1-236ENST00000537750 OLFM4Q6UX06 510 aa17.15■□□□□ 0.34
SYNE1-236ENST00000537750 COPS6Q7L5N1 327 aa17.15■□□□□ 0.34
SYNE1-236ENST00000537750 BRAPQ7Z569 592 aa17.15■□□□□ 0.34
SYNE1-236ENST00000537750 METTL16Q86W50 562 aaKnown RBP17.15■□□□□ 0.34
SYNE1-236ENST00000537750 IP6K1Q92551 441 aa17.15■□□□□ 0.34
SYNE1-236ENST00000537750 PAG1Q9NWQ8 432 aa17.15■□□□□ 0.34
SYNE1-236ENST00000537750 PCDHA5Q9Y5H7 936 aa17.15■□□□□ 0.34
SYNE1-236ENST00000537750 ANKRD65E5RJM6 399 aa17.15■□□□□ 0.34
SYNE1-236ENST00000537750 CHMP4BP1P59074 171 aa17.15■□□□□ 0.34
SYNE1-236ENST00000537750 FAM69CQ0P6D2 419 aa17.15■□□□□ 0.34
SYNE1-236ENST00000537750 SLC39A6Q13433 755 aa17.15■□□□□ 0.34
SYNE1-236ENST00000537750 PLEKHO1Q53GL0 409 aaPredicted RBP17.15■□□□□ 0.34
SYNE1-236ENST00000537750 C1orf141Q5JVX7 400 aa17.15■□□□□ 0.34
SYNE1-236ENST00000537750 PNKPQ96T60 521 aa17.15■□□□□ 0.34
SYNE1-236ENST00000537750 ANKZF1Q9H8Y5 726 aa17.15■□□□□ 0.34
SYNE1-236ENST00000537750 HPS5Q9UPZ3 1129 aa17.15■□□□□ 0.34
SYNE1-236ENST00000537750 STX10O60499 249 aa17.14■□□□□ 0.34
SYNE1-236ENST00000537750 EFCC1Q9HA90 598 aa17.14■□□□□ 0.34
SYNE1-236ENST00000537750 HELLSQ9NRZ9 838 aa17.14■□□□□ 0.34
SYNE1-236ENST00000537750 TNRQ92752 1358 aa17.14■□□□□ 0.34
SYNE1-236ENST00000537750 MAST3O60307 1309 aa17.14■□□□□ 0.33
SYNE1-236ENST00000537750 CPLX1O14810 134 aa17.14■□□□□ 0.33
SYNE1-236ENST00000537750 SPECC1Q5M775 1068 aa17.14■□□□□ 0.33
SYNE1-236ENST00000537750 ZMYM1Q5SVZ6 1142 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms