RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 ADH5P11766 374 aa9.41□□□□□ -0.9
SYNE1-232ENST00000535081 CBLL1Q75N03 491 aa9.41□□□□□ -0.9
SYNE1-232ENST00000535081 TP53INP2Q8IXH6 220 aa9.41□□□□□ -0.9
SYNE1-232ENST00000535081 BSDC1Q9NW68 430 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-232ENST00000535081 FAM13AO94988 1023 aa9.4□□□□□ -0.9
SYNE1-232ENST00000535081 SSFA2P28290 1259 aa9.4□□□□□ -0.9
SYNE1-232ENST00000535081 FAM170BA6NMN3 283 aa9.39□□□□□ -0.91
SYNE1-232ENST00000535081 GATA6Q92908 595 aa9.39□□□□□ -0.91
SYNE1-232ENST00000535081 ACTL7BQ9Y614 415 aa9.39□□□□□ -0.91
SYNE1-232ENST00000535081 FZD6O60353 706 aa9.38□□□□□ -0.91
SYNE1-232ENST00000535081 PCDH1Q08174 1060 aa9.38□□□□□ -0.91
SYNE1-232ENST00000535081 FZD5Q13467 585 aa9.38□□□□□ -0.91
SYNE1-232ENST00000535081 GJD3Q8N144 294 aa9.38□□□□□ -0.91
SYNE1-232ENST00000535081 ZFYVE28Q9HCC9 887 aa9.38□□□□□ -0.91
SYNE1-232ENST00000535081 TMEM88BA6NKF7 163 aa9.37□□□□□ -0.91
SYNE1-232ENST00000535081 OGFOD2Q6N063 350 aa9.37□□□□□ -0.91
SYNE1-232ENST00000535081 CLEC4MQ9H2X3 399 aaPredicted RBP9.37□□□□□ -0.91
SYNE1-232ENST00000535081 A0A096LPE4 126 aa9.36□□□□□ -0.91
SYNE1-232ENST00000535081 A0A1W2PPZ6 126 aa9.36□□□□□ -0.91
SYNE1-232ENST00000535081 POLR3DP05423 398 aaPredicted RBP9.36□□□□□ -0.91
SYNE1-232ENST00000535081 RAB6AP20340 208 aa9.36□□□□□ -0.91
SYNE1-232ENST00000535081 MAOBP27338 520 aa9.36□□□□□ -0.91
SYNE1-232ENST00000535081 MAP7Q14244 749 aa9.36□□□□□ -0.91
SYNE1-232ENST00000535081 HP1BP3Q5SSJ5 553 aaPredicted RBP9.36□□□□□ -0.91
SYNE1-232ENST00000535081 FLCNQ8NFG4 579 aa9.36□□□□□ -0.91
SYNE1-232ENST00000535081 CYP11A1P05108 521 aa9.35□□□□□ -0.91
SYNE1-232ENST00000535081 CTSBP07858 339 aa9.35□□□□□ -0.91
SYNE1-232ENST00000535081 SF3B2Q13435 895 aaKnown RBP9.35□□□□□ -0.91
SYNE1-232ENST00000535081 COL19A1Q14993 1142 aa9.35□□□□□ -0.91
SYNE1-232ENST00000535081 ZNF423Q2M1K9 1284 aa9.35□□□□□ -0.91
SYNE1-232ENST00000535081 CCNJLQ8IV13 435 aa9.35□□□□□ -0.91
SYNE1-232ENST00000535081 AGBL5Q8NDL9 886 aa9.35□□□□□ -0.91
SYNE1-232ENST00000535081 ASIC4Q96FT7 647 aa9.35□□□□□ -0.91
SYNE1-232ENST00000535081 CCDC87Q9NVE4 849 aa9.35□□□□□ -0.91
SYNE1-232ENST00000535081 MTMR7Q9Y216 660 aa9.35□□□□□ -0.91
SYNE1-232ENST00000535081 NFICP08651 508 aa9.34□□□□□ -0.91
SYNE1-232ENST00000535081 ITGB5P18084 799 aa9.34□□□□□ -0.91
SYNE1-232ENST00000535081 CYP27A1Q02318 531 aa9.34□□□□□ -0.91
SYNE1-232ENST00000535081 POU4F3Q15319 338 aa9.34□□□□□ -0.91
SYNE1-232ENST00000535081 DUSP27Q5VZP5 1158 aa9.34□□□□□ -0.91
SYNE1-232ENST00000535081 SEMA6CQ9H3T2 930 aa9.34□□□□□ -0.91
SYNE1-232ENST00000535081 LRRC4CQ9HCJ2 640 aa9.34□□□□□ -0.91
SYNE1-232ENST00000535081 ARID1BQ8NFD5 2236 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-232ENST00000535081 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-232ENST00000535081 A0A1W2PP55 124 aa9.33□□□□□ -0.92
SYNE1-232ENST00000535081 JUNBP17275 347 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-232ENST00000535081 GRIA4P48058 902 aa9.33□□□□□ -0.92
SYNE1-232ENST00000535081 FKBP4Q02790 459 aaKnown RBP eCLIP9.33□□□□□ -0.92
SYNE1-232ENST00000535081 AKAP4Q5JQC9 854 aa9.33□□□□□ -0.92
SYNE1-232ENST00000535081 ZNF765Q7L2R6 523 aa9.33□□□□□ -0.92
SYNE1-232ENST00000535081 DYMQ7RTS9 669 aa9.33□□□□□ -0.92
SYNE1-232ENST00000535081 TCF12Q99081 682 aa9.33□□□□□ -0.92
SYNE1-232ENST00000535081 ACSS3Q9H6R3 686 aa9.33□□□□□ -0.92
SYNE1-232ENST00000535081 LIN7BQ9HAP6 207 aa9.33□□□□□ -0.92
SYNE1-232ENST00000535081 ZFYVE1Q9HBF4 777 aa9.33□□□□□ -0.92
SYNE1-232ENST00000535081 PAK6Q9NQU5 681 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-232ENST00000535081 FAM105AQ9NUU6 356 aa9.33□□□□□ -0.92
SYNE1-232ENST00000535081 ZC3H7BQ9UGR2 993 aaKnown RBP9.33□□□□□ -0.92
SYNE1-232ENST00000535081 SPRED3Q2MJR0 410 aa9.32□□□□□ -0.92
SYNE1-232ENST00000535081 GALNT12Q8IXK2 581 aa9.32□□□□□ -0.92
SYNE1-232ENST00000535081 RAD18Q9NS91 495 aa9.32□□□□□ -0.92
SYNE1-232ENST00000535081 AP4E1Q9UPM8 1137 aa9.32□□□□□ -0.92
SYNE1-232ENST00000535081 CORO1BQ9BR76 489 aa9.31□□□□□ -0.92
SYNE1-232ENST00000535081 TRIM56Q9BRZ2 755 aaKnown RBP9.31□□□□□ -0.92
SYNE1-232ENST00000535081 ARID3CA6NKF2 412 aa9.3□□□□□ -0.92
SYNE1-232ENST00000535081 ABL1P00519 1130 aa9.3□□□□□ -0.92
SYNE1-232ENST00000535081 JAG1P78504 1218 aa9.3□□□□□ -0.92
SYNE1-232ENST00000535081 ZNF211Q13398 564 aaPredicted RBP9.3□□□□□ -0.92
SYNE1-232ENST00000535081 POU5F2Q8N7G0 328 aa9.3□□□□□ -0.92
SYNE1-232ENST00000535081 ANO2Q9NQ90 1003 aa9.3□□□□□ -0.92
SYNE1-232ENST00000535081 ECEL1O95672 775 aa9.29□□□□□ -0.92
SYNE1-232ENST00000535081 LCE1DQ5T752 114 aa9.29□□□□□ -0.92
SYNE1-232ENST00000535081 PHLDB3Q6NSJ2 640 aa9.29□□□□□ -0.92
SYNE1-232ENST00000535081 DDX54Q8TDD1 881 aaKnown RBP9.29□□□□□ -0.92
SYNE1-232ENST00000535081 GSX1Q9H4S2 264 aaPredicted RBP9.29□□□□□ -0.92
SYNE1-232ENST00000535081 B3GALT4O96024 378 aa9.28□□□□□ -0.92
SYNE1-232ENST00000535081 C8AP07357 584 aa9.28□□□□□ -0.92
SYNE1-232ENST00000535081 ASPAP45381 313 aa9.28□□□□□ -0.92
SYNE1-232ENST00000535081 SEZ6L2Q6UXD5 910 aa9.28□□□□□ -0.92
SYNE1-232ENST00000535081 C1GALT1Q9NS00 363 aa9.28□□□□□ -0.92
SYNE1-232ENST00000535081 ZNF576Q9H609 170 aa9.27□□□□□ -0.93
SYNE1-232ENST00000535081 DAGLAQ9Y4D2 1042 aa9.27□□□□□ -0.93
SYNE1-232ENST00000535081 DYNC1LI2O43237 492 aaPredicted RBP9.26□□□□□ -0.93
SYNE1-232ENST00000535081 PPP1R15AO75807 674 aaPredicted RBP9.26□□□□□ -0.93
SYNE1-232ENST00000535081 BCL7CQ8WUZ0 217 aaPredicted RBP9.26□□□□□ -0.93
SYNE1-232ENST00000535081 SLC5A6Q9Y289 635 aa9.26□□□□□ -0.93
SYNE1-232ENST00000535081 AOC2O75106 756 aa9.25□□□□□ -0.93
SYNE1-232ENST00000535081 PAPLNO95428 1278 aa9.25□□□□□ -0.93
SYNE1-232ENST00000535081 PDE3AQ14432 1141 aa9.25□□□□□ -0.93
SYNE1-232ENST00000535081 KIAA0319Q5VV43 1072 aa9.25□□□□□ -0.93
SYNE1-232ENST00000535081 OGFOD3Q6PK18 319 aa9.25□□□□□ -0.93
SYNE1-232ENST00000535081 WDR18Q9BV38 432 aa9.25□□□□□ -0.93
SYNE1-232ENST00000535081 ITPKAP23677 461 aa9.24□□□□□ -0.93
SYNE1-232ENST00000535081 PLCL1Q15111 1095 aa9.24□□□□□ -0.93
SYNE1-232ENST00000535081 USPL1Q5W0Q7 1092 aa9.24□□□□□ -0.93
SYNE1-232ENST00000535081 ZNF574Q6ZN55 896 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-232ENST00000535081 WFDC3Q8IUB2 231 aa9.24□□□□□ -0.93
SYNE1-232ENST00000535081 STK11IPQ8N1F8 1099 aa9.24□□□□□ -0.93
SYNE1-232ENST00000535081 CCDC82Q8N4S0 544 aa9.23□□□□□ -0.93
SYNE1-232ENST00000535081 EHD4Q9H223 541 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms