RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 PFKFB2O60825 505 aa12.92□□□□□ -0.34
TRIM3-211ENST00000532542 TPM3P06753 285 aa12.92□□□□□ -0.34
TRIM3-211ENST00000532542 MCAMP43121 646 aa12.92□□□□□ -0.34
TRIM3-211ENST00000532542 GYG1P46976 350 aa12.92□□□□□ -0.34
TRIM3-211ENST00000532542 CAMK4Q16566 473 aa12.92□□□□□ -0.34
TRIM3-211ENST00000532542 GJD4Q96KN9 370 aaPredicted RBP12.92□□□□□ -0.34
TRIM3-211ENST00000532542 CAMTA2O94983 1202 aa12.92□□□□□ -0.34
TRIM3-211ENST00000532542 KIF5BP33176 963 aa12.92□□□□□ -0.34
TRIM3-211ENST00000532542 TSGA10IPQ3SY00 556 aa12.92□□□□□ -0.34
TRIM3-211ENST00000532542 FAM43AQ8N2R8 423 aa12.92□□□□□ -0.34
TRIM3-211ENST00000532542 BSDC1Q9NW68 430 aaPredicted RBP12.92□□□□□ -0.34
TRIM3-211ENST00000532542 FAM208AQ9UK61 1670 aaKnown RBP12.92□□□□□ -0.34
TRIM3-211ENST00000532542 LRRC37A3O60309 1634 aa12.92□□□□□ -0.34
TRIM3-211ENST00000532542 SEMA3EO15041 775 aa12.91□□□□□ -0.34
TRIM3-211ENST00000532542 CCDC178Q5BJE1 867 aa12.91□□□□□ -0.34
TRIM3-211ENST00000532542 IFIT1BQ5T764 474 aaKnown RBP12.91□□□□□ -0.34
TRIM3-211ENST00000532542 OLFM4Q6UX06 510 aa12.91□□□□□ -0.34
TRIM3-211ENST00000532542 MTMR6Q9Y217 621 aa12.91□□□□□ -0.34
TRIM3-211ENST00000532542 ITPK1Q13572 414 aa12.91□□□□□ -0.34
TRIM3-211ENST00000532542 TRIM5Q9C035 493 aa12.91□□□□□ -0.34
TRIM3-211ENST00000532542 IL25Q9H293 177 aa12.91□□□□□ -0.34
TRIM3-211ENST00000532542 NCOA5Q9HCD5 579 aaKnown RBP12.91□□□□□ -0.34
TRIM3-211ENST00000532542 RTL9Q8NET4 1388 aa12.91□□□□□ -0.34
TRIM3-211ENST00000532542 PLCG2P16885 1265 aa12.91□□□□□ -0.34
TRIM3-211ENST00000532542 RC3H1Q5TC82 1133 aaKnown RBP12.91□□□□□ -0.34
TRIM3-211ENST00000532542 IFNL3Q8IZI9 196 aa12.91□□□□□ -0.34
TRIM3-211ENST00000532542 JAK2O60674 1132 aa12.91□□□□□ -0.34
TRIM3-211ENST00000532542 AKNAD1Q5T1N1 836 aa12.91□□□□□ -0.34
TRIM3-211ENST00000532542 LRP10Q7Z4F1 713 aa12.91□□□□□ -0.34
TRIM3-211ENST00000532542 BRAPQ7Z569 592 aa12.91□□□□□ -0.34
TRIM3-211ENST00000532542 FSIP1Q8NA03 581 aa12.91□□□□□ -0.34
TRIM3-211ENST00000532542 KCNG4Q8TDN1 519 aa12.91□□□□□ -0.34
TRIM3-211ENST00000532542 PUS7LQ9H0K6 701 aaKnown RBP12.91□□□□□ -0.34
TRIM3-211ENST00000532542 PARP3Q9Y6F1 533 aa12.91□□□□□ -0.34
TRIM3-211ENST00000532542 CALM1P0DP23 149 aa12.9□□□□□ -0.34
TRIM3-211ENST00000532542 CALM2P0DP24 149 aa12.9□□□□□ -0.34
TRIM3-211ENST00000532542 CALM3P0DP25 149 aa12.9□□□□□ -0.34
TRIM3-211ENST00000532542 RBM5P52756 815 aaKnown RBP eCLIP12.9□□□□□ -0.34
TRIM3-211ENST00000532542 ZC3H12CQ9C0D7 883 aaKnown RBP12.9□□□□□ -0.34
TRIM3-211ENST00000532542 SRP68Q9UHB9 627 aaKnown RBP12.9□□□□□ -0.34
TRIM3-211ENST00000532542 GGA1Q9UJY5 639 aa12.9□□□□□ -0.34
TRIM3-211ENST00000532542 MED23Q9ULK4 1368 aa12.9□□□□□ -0.34
TRIM3-211ENST00000532542 UFL1O94874 794 aa12.9□□□□□ -0.34
TRIM3-211ENST00000532542 ZNF445P59923 1031 aa12.9□□□□□ -0.34
TRIM3-211ENST00000532542 RASGRF1Q13972 1273 aa12.9□□□□□ -0.34
TRIM3-211ENST00000532542 INTS5Q6P9B9 1019 aaKnown RBP12.9□□□□□ -0.34
TRIM3-211ENST00000532542 CEP57L1Q8IYX8 460 aa12.9□□□□□ -0.34
TRIM3-211ENST00000532542 CDC37L1Q7L3B6 337 aa12.9□□□□□ -0.34
TRIM3-211ENST00000532542 ZNF622Q969S3 477 aaKnown RBP eCLIP12.9□□□□□ -0.34
TRIM3-211ENST00000532542 KAT14Q9H8E8 782 aa12.9□□□□□ -0.34
TRIM3-211ENST00000532542 TRPM3Q9HCF6 1732 aaPredicted RBP12.9□□□□□ -0.35
TRIM3-211ENST00000532542 USP54Q70EL1 1684 aa12.89□□□□□ -0.35
TRIM3-211ENST00000532542 CLEC17AQ6ZS10 378 aa12.89□□□□□ -0.35
TRIM3-211ENST00000532542 KRT27Q7Z3Y8 459 aa12.89□□□□□ -0.35
TRIM3-211ENST00000532542 CERS3Q8IU89 383 aa12.89□□□□□ -0.35
TRIM3-211ENST00000532542 CERKQ8TCT0 537 aa12.89□□□□□ -0.35
TRIM3-211ENST00000532542 MCM9Q9NXL9 1143 aa12.89□□□□□ -0.35
TRIM3-211ENST00000532542 ZNF609O15014 1411 aa12.89□□□□□ -0.35
TRIM3-211ENST00000532542 TXLNAP40222 546 aa12.89□□□□□ -0.35
TRIM3-211ENST00000532542 TPD52L1Q16890 204 aaPredicted RBP12.89□□□□□ -0.35
TRIM3-211ENST00000532542 UVSSAQ2YD98 709 aa12.89□□□□□ -0.35
TRIM3-211ENST00000532542 CCAR1Q8IX12 1150 aaKnown RBP12.89□□□□□ -0.35
TRIM3-211ENST00000532542 PIH1D3Q9NQM4 214 aaKnown RBP12.89□□□□□ -0.35
TRIM3-211ENST00000532542 WWC3Q9ULE0 1092 aa12.89□□□□□ -0.35
TRIM3-211ENST00000532542 CCDC47Q96A33 483 aaKnown RBP12.89□□□□□ -0.35
TRIM3-211ENST00000532542 ALDH8A1Q9H2A2 487 aaPredicted RBP12.89□□□□□ -0.35
TRIM3-211ENST00000532542 ALS2Q96Q42 1657 aa12.89□□□□□ -0.35
TRIM3-211ENST00000532542 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.89□□□□□ -0.35
TRIM3-211ENST00000532542 CAVIN2O95810 425 aa12.89□□□□□ -0.35
TRIM3-211ENST00000532542 CYP2E1P05181 493 aaPredicted RBP12.89□□□□□ -0.35
TRIM3-211ENST00000532542 ADRA2BP18089 450 aa12.89□□□□□ -0.35
TRIM3-211ENST00000532542 SOGA3Q5TF21 947 aa12.89□□□□□ -0.35
TRIM3-211ENST00000532542 ZNF512BQ96KM6 892 aaPredicted RBP12.89□□□□□ -0.35
TRIM3-211ENST00000532542 ZNF804BA4D1E1 1349 aa12.88□□□□□ -0.35
TRIM3-211ENST00000532542 LARGE1O95461 756 aa12.88□□□□□ -0.35
TRIM3-211ENST00000532542 CKAP2LQ8IYA6 745 aa12.88□□□□□ -0.35
TRIM3-211ENST00000532542 PARP4Q9UKK3 1724 aaKnown RBP12.88□□□□□ -0.35
TRIM3-211ENST00000532542 ESPNB1AK53 854 aa12.88□□□□□ -0.35
TRIM3-211ENST00000532542 DACT1Q9NYF0 836 aa12.88□□□□□ -0.35
TRIM3-211ENST00000532542 CNTNAP4Q9C0A0 1308 aa12.88□□□□□ -0.35
TRIM3-211ENST00000532542 CTDSPL2Q05D32 466 aa12.88□□□□□ -0.35
TRIM3-211ENST00000532542 GIMAP6Q6P9H5 292 aa12.88□□□□□ -0.35
TRIM3-211ENST00000532542 FLAD1Q8NFF5 587 aa12.88□□□□□ -0.35
TRIM3-211ENST00000532542 ANO10Q9NW15 660 aa12.88□□□□□ -0.35
TRIM3-211ENST00000532542 JAG2Q9Y219 1238 aa12.88□□□□□ -0.35
TRIM3-211ENST00000532542 ARID4AP29374 1257 aaPredicted RBP12.87□□□□□ -0.35
TRIM3-211ENST00000532542 PDIA3P30101 505 aaKnown RBP12.87□□□□□ -0.35
TRIM3-211ENST00000532542 TBC1D9BQ66K14 1250 aa12.87□□□□□ -0.35
TRIM3-211ENST00000532542 LEMD3Q9Y2U8 911 aa12.87□□□□□ -0.35
TRIM3-211ENST00000532542 PHRF1Q9P1Y6 1649 aaKnown RBP12.87□□□□□ -0.35
TRIM3-211ENST00000532542 MRC1P22897 1456 aa12.87□□□□□ -0.35
TRIM3-211ENST00000532542 RGPD2P0DJD1 1756 aa12.87□□□□□ -0.35
TRIM3-211ENST00000532542 ATP2B2Q01814 1243 aa12.87□□□□□ -0.35
TRIM3-211ENST00000532542 SCRN1Q12765 414 aa12.87□□□□□ -0.35
TRIM3-211ENST00000532542 PPP2R5BQ15173 497 aa12.87□□□□□ -0.35
TRIM3-211ENST00000532542 ZSCAN29Q8IWY8 852 aaPredicted RBP12.87□□□□□ -0.35
TRIM3-211ENST00000532542 NTSR2O95665 410 aa12.87□□□□□ -0.35
TRIM3-211ENST00000532542 RXRAP19793 462 aa12.87□□□□□ -0.35
TRIM3-211ENST00000532542 SCARF1Q14162 830 aa12.87□□□□□ -0.35
TRIM3-211ENST00000532542 LINC00116Q8NCU8 138 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms