RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 ORC1Q13415 861 aa7.18□□□□□ -1.26
CD44-235ENST00000532339 RNF43Q68DV7 783 aa7.18□□□□□ -1.26
CD44-235ENST00000532339 BEND4Q6ZU67 534 aa7.18□□□□□ -1.26
CD44-235ENST00000532339 TRIM42Q8IWZ5 723 aa7.18□□□□□ -1.26
CD44-235ENST00000532339 SMG8Q8ND04 991 aaKnown RBP7.18□□□□□ -1.26
CD44-235ENST00000532339 DMRTB1Q96MA1 342 aa7.18□□□□□ -1.26
CD44-235ENST00000532339 FAM83CQ9BQN1 747 aa7.18□□□□□ -1.26
CD44-235ENST00000532339 DNAJC25Q9H1X3 360 aa7.18□□□□□ -1.26
CD44-235ENST00000532339 SUGCTQ9HAC7 445 aa7.18□□□□□ -1.26
CD44-235ENST00000532339 RSF1Q96T23 1441 aaPredicted RBP7.18□□□□□ -1.26
CD44-235ENST00000532339 HMX2A2RU54 273 aa7.17□□□□□ -1.26
CD44-235ENST00000532339 GRIA4P48058 902 aa7.17□□□□□ -1.26
CD44-235ENST00000532339 SPRED3Q2MJR0 410 aa7.17□□□□□ -1.26
CD44-235ENST00000532339 EXOSC6Q5RKV6 272 aaKnown RBP7.17□□□□□ -1.26
CD44-235ENST00000532339 C12orf50Q8NA57 414 aaPredicted RBP7.17□□□□□ -1.26
CD44-235ENST00000532339 DDX54Q8TDD1 881 aaKnown RBP7.17□□□□□ -1.26
CD44-235ENST00000532339 DBNDD2Q9BQY9 259 aa7.17□□□□□ -1.26
CD44-235ENST00000532339 RBCK1Q9BYM8 510 aa7.17□□□□□ -1.26
CD44-235ENST00000532339 EHD4Q9H223 541 aa7.17□□□□□ -1.26
CD44-235ENST00000532339 NPHS2Q9NP85 383 aa7.17□□□□□ -1.26
CD44-235ENST00000532339 SOWAHDA6NJG2 315 aa7.16□□□□□ -1.26
CD44-235ENST00000532339 GPR182O15218 404 aa7.16□□□□□ -1.26
CD44-235ENST00000532339 HP1BP3Q5SSJ5 553 aaPredicted RBP7.16□□□□□ -1.26
CD44-235ENST00000532339 NIF3L1Q9GZT8 377 aa7.16□□□□□ -1.26
CD44-235ENST00000532339 ZFYVE1Q9HBF4 777 aa7.16□□□□□ -1.26
CD44-235ENST00000532339 PCMTD2Q9NV79 361 aa7.16□□□□□ -1.26
CD44-235ENST00000532339 EIF1AYO14602 144 aaKnown RBP7.15□□□□□ -1.26
CD44-235ENST00000532339 TIAF1O95411 115 aa7.15□□□□□ -1.26
CD44-235ENST00000532339 BRD1O95696 1058 aa7.15□□□□□ -1.26
CD44-235ENST00000532339 IGHA2P01877 340 aa7.15□□□□□ -1.26
CD44-235ENST00000532339 CYP11A1P05108 521 aa7.15□□□□□ -1.26
CD44-235ENST00000532339 SSTR4P31391 388 aa7.15□□□□□ -1.26
CD44-235ENST00000532339 ZNF423Q2M1K9 1284 aa7.15□□□□□ -1.26
CD44-235ENST00000532339 ZDHHC13Q8IUH4 622 aa7.15□□□□□ -1.26
CD44-235ENST00000532339 CCDC74AQ96AQ1 378 aa7.15□□□□□ -1.26
CD44-235ENST00000532339 ALKBH8Q96BT7 664 aaKnown RBP7.15□□□□□ -1.26
CD44-235ENST00000532339 NRSN2Q9GZP1 204 aa7.15□□□□□ -1.26
CD44-235ENST00000532339 GNEQ9Y223 722 aaKnown RBP7.15□□□□□ -1.26
CD44-235ENST00000532339 COBLO75128 1261 aa7.14□□□□□ -1.27
CD44-235ENST00000532339 DLGAP3O95886 979 aa7.14□□□□□ -1.27
CD44-235ENST00000532339 ITPKAP23677 461 aa7.14□□□□□ -1.27
CD44-235ENST00000532339 MAP4P27816 1152 aaKnown RBP7.14□□□□□ -1.27
CD44-235ENST00000532339 CD97P48960 835 aa7.14□□□□□ -1.27
CD44-235ENST00000532339 PTPN12Q05209 780 aaKnown RBP7.14□□□□□ -1.27
CD44-235ENST00000532339 ZNF576Q9H609 170 aa7.14□□□□□ -1.27
CD44-235ENST00000532339 DISP3Q9P2K9 1392 aa7.13□□□□□ -1.27
CD44-235ENST00000532339 GADD45BO75293 160 aaPredicted RBP7.13□□□□□ -1.27
CD44-235ENST00000532339 B3GALT4O96024 378 aa7.13□□□□□ -1.27
CD44-235ENST00000532339 TGFB1P01137 390 aa7.13□□□□□ -1.27
CD44-235ENST00000532339 MAOBP27338 520 aa7.13□□□□□ -1.27
CD44-235ENST00000532339 RXRBP28702 533 aa7.13□□□□□ -1.27
CD44-235ENST00000532339 GRIK1P39086 918 aa7.13□□□□□ -1.27
CD44-235ENST00000532339 USP11P51784 963 aa7.13□□□□□ -1.27
CD44-235ENST00000532339 POU4F3Q15319 338 aa7.13□□□□□ -1.27
CD44-235ENST00000532339 SGO2Q562F6 1265 aa7.13□□□□□ -1.27
CD44-235ENST00000532339 PRPF40BQ6NWY9 871 aaKnown RBP7.13□□□□□ -1.27
CD44-235ENST00000532339 CSRNP1Q96S65 589 aa7.13□□□□□ -1.27
CD44-235ENST00000532339 BIN2Q9UBW5 565 aaPredicted RBP7.13□□□□□ -1.27
CD44-235ENST00000532339 TRAK1Q9UPV9 953 aa7.13□□□□□ -1.27
CD44-235ENST00000532339 INTS5Q6P9B9 1019 aaKnown RBP7.12□□□□□ -1.27
CD44-235ENST00000532339 GIMAP7Q8NHV1 300 aa7.12□□□□□ -1.27
CD44-235ENST00000532339 CORO1BQ9BR76 489 aa7.12□□□□□ -1.27
CD44-235ENST00000532339 YIPF2Q9BWQ6 316 aa7.12□□□□□ -1.27
CD44-235ENST00000532339 ABCB6Q9NP58 842 aa7.12□□□□□ -1.27
CD44-235ENST00000532339 DCTN4Q9UJW0 460 aa7.12□□□□□ -1.27
CD44-235ENST00000532339 DRD2P14416 443 aa7.11□□□□□ -1.27
CD44-235ENST00000532339 SOX4Q06945 474 aaPredicted RBP7.11□□□□□ -1.27
CD44-235ENST00000532339 RPS26P11Q5JNZ5 115 aaPredicted RBP7.11□□□□□ -1.27
CD44-235ENST00000532339 SHKBP1Q8TBC3 707 aa7.11□□□□□ -1.27
CD44-235ENST00000532339 HECW2Q9P2P5 1572 aa7.11□□□□□ -1.27
CD44-235ENST00000532339 TMEM238LA0A1B0GVL6 79 aa7.1□□□□□ -1.27
CD44-235ENST00000532339 FAM95CA0A1B0GW59 222 aa7.1□□□□□ -1.27
CD44-235ENST00000532339 PRR19A6NJB7 356 aa7.1□□□□□ -1.27
CD44-235ENST00000532339 KIAA1324LA8MWY0 1029 aaPredicted RBP7.1□□□□□ -1.27
CD44-235ENST00000532339 ADH5P11766 374 aa7.1□□□□□ -1.27
CD44-235ENST00000532339 PAOXQ6QHF9 649 aa7.1□□□□□ -1.27
CD44-235ENST00000532339 TMC7Q7Z402 723 aa7.1□□□□□ -1.27
CD44-235ENST00000532339 C2CD4AQ8NCU7 369 aaPredicted RBP7.1□□□□□ -1.27
CD44-235ENST00000532339 MFSD14AQ96MC6 490 aa7.1□□□□□ -1.27
CD44-235ENST00000532339 TRIM56Q9BRZ2 755 aaKnown RBP7.1□□□□□ -1.27
CD44-235ENST00000532339 WDR64B1ANS9 1081 aa7.09□□□□□ -1.27
CD44-235ENST00000532339 AP3B2Q13367 1082 aa7.09□□□□□ -1.27
CD44-235ENST00000532339 GRM2Q14416 872 aa7.09□□□□□ -1.27
CD44-235ENST00000532339 NFKBIBQ15653 356 aa7.09□□□□□ -1.27
CD44-235ENST00000532339 CDPF1Q6NVV7 123 aa7.09□□□□□ -1.27
CD44-235ENST00000532339 EPS8L3Q8TE67 593 aaKnown RBP7.09□□□□□ -1.27
CD44-235ENST00000532339 FBLIM1Q8WUP2 373 aa7.09□□□□□ -1.27
CD44-235ENST00000532339 RAD18Q9NS91 495 aa7.09□□□□□ -1.27
CD44-235ENST00000532339 NLRP2Q9NX02 1062 aa7.09□□□□□ -1.27
CD44-235ENST00000532339 PPP4R2Q9NY27 417 aa7.09□□□□□ -1.27
CD44-235ENST00000532339 CADPSQ9ULU8 1353 aa7.08□□□□□ -1.28
CD44-235ENST00000532339 MED26O95402 600 aa7.08□□□□□ -1.28
CD44-235ENST00000532339 CTSBP07858 339 aa7.08□□□□□ -1.28
CD44-235ENST00000532339 MAPK1P28482 360 aa7.08□□□□□ -1.28
CD44-235ENST00000532339 GLIS3Q8NEA6 775 aa7.08□□□□□ -1.28
CD44-235ENST00000532339 EZH1Q92800 747 aaPredicted RBP7.08□□□□□ -1.28
CD44-235ENST00000532339 ATG3Q9NT62 314 aa7.08□□□□□ -1.28
CD44-235ENST00000532339 BAZ1BQ9UIG0 1483 aaKnown RBP7.07□□□□□ -1.28
CD44-235ENST00000532339 CPSF6Q16630 551 aaKnown RBP eCLIP7.07□□□□□ -1.28
CD44-235ENST00000532339 AKAP4Q5JQC9 854 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms