RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 WNK4Q96J92 1243 aa18.42■□□□□ 0.54
VPS28-215ENST00000531924 CLMNQ96JQ2 1002 aa18.42■□□□□ 0.54
VPS28-215ENST00000531924 AOX1Q06278 1338 aa18.42■□□□□ 0.54
VPS28-215ENST00000531924 A0A1B0GUL6 1792 aa18.42■□□□□ 0.54
VPS28-215ENST00000531924 EYA2O00167 538 aa18.41■□□□□ 0.54
VPS28-215ENST00000531924 SLC5A1P13866 664 aa18.41■□□□□ 0.54
VPS28-215ENST00000531924 BCAMP50895 628 aa18.41■□□□□ 0.54
VPS28-215ENST00000531924 OTUD7BQ6GQQ9 843 aa18.41■□□□□ 0.54
VPS28-215ENST00000531924 API5Q9BZZ5 524 aaKnown RBP18.41■□□□□ 0.54
VPS28-215ENST00000531924 TMOD2Q9NZR1 351 aa18.41■□□□□ 0.54
VPS28-215ENST00000531924 FKTNO75072 461 aa18.4■□□□□ 0.54
VPS28-215ENST00000531924 HDLBPQ00341 1268 aaKnown RBP18.4■□□□□ 0.54
VPS28-215ENST00000531924 NOM1Q5C9Z4 860 aaKnown RBP18.4■□□□□ 0.54
VPS28-215ENST00000531924 VGLL2Q8N8G2 317 aa18.4■□□□□ 0.54
VPS28-215ENST00000531924 NOB1Q9ULX3 412 aaKnown RBP18.4■□□□□ 0.54
VPS28-215ENST00000531924 MAST3O60307 1309 aa18.4■□□□□ 0.54
VPS28-215ENST00000531924 USP2O75604 605 aaPredicted RBP18.39■□□□□ 0.53
VPS28-215ENST00000531924 IFNL1Q8IU54 200 aa18.39■□□□□ 0.53
VPS28-215ENST00000531924 LPIN2Q92539 896 aa18.39■□□□□ 0.53
VPS28-215ENST00000531924 SSC5DA1L4H1 1573 aa18.38■□□□□ 0.53
VPS28-215ENST00000531924 CCER2I3L3R5 266 aa18.38■□□□□ 0.53
VPS28-215ENST00000531924 SOX10P56693 466 aa18.38■□□□□ 0.53
VPS28-215ENST00000531924 TRMT2AQ8IZ69 625 aaKnown RBP18.38■□□□□ 0.53
VPS28-215ENST00000531924 TMEM39BQ9GZU3 492 aa18.38■□□□□ 0.53
VPS28-215ENST00000531924 SIL1Q9H173 461 aa18.38■□□□□ 0.53
VPS28-215ENST00000531924 ELP3Q9H9T3 547 aa18.38■□□□□ 0.53
VPS28-215ENST00000531924 GNL3LQ9NVN8 582 aaKnown RBP18.38■□□□□ 0.53
VPS28-215ENST00000531924 CEP126Q9P2H0 1117 aa18.38■□□□□ 0.53
VPS28-215ENST00000531924 SUGT1Q9Y2Z0 365 aa18.38■□□□□ 0.53
VPS28-215ENST00000531924 KIF16BQ96L93 1317 aa18.38■□□□□ 0.53
VPS28-215ENST00000531924 GRIK5Q16478 980 aa18.37■□□□□ 0.53
VPS28-215ENST00000531924 WDR66Q8TBY9 1149 aa18.37■□□□□ 0.53
VPS28-215ENST00000531924 CFHR5Q9BXR6 569 aa18.37■□□□□ 0.53
VPS28-215ENST00000531924 HPS5Q9UPZ3 1129 aa18.37■□□□□ 0.53
VPS28-215ENST00000531924 CSADQ9Y600 493 aa18.37■□□□□ 0.53
VPS28-215ENST00000531924 FGFR2P21802 821 aa18.36■□□□□ 0.53
VPS28-215ENST00000531924 RFX5P48382 616 aaPredicted RBP18.36■□□□□ 0.53
VPS28-215ENST00000531924 OPTNQ96CV9 577 aa18.36■□□□□ 0.53
VPS28-215ENST00000531924 HOOK2Q96ED9 719 aa18.36■□□□□ 0.53
VPS28-215ENST00000531924 ZDHHC15Q96MV8 337 aa18.36■□□□□ 0.53
VPS28-215ENST00000531924 FBXO3Q9UK99 471 aa18.36■□□□□ 0.53
VPS28-215ENST00000531924 CACNB3P54284 484 aa18.35■□□□□ 0.53
VPS28-215ENST00000531924 MAP3K9P80192 1104 aa18.35■□□□□ 0.53
VPS28-215ENST00000531924 ATP2B3Q16720 1220 aa18.35■□□□□ 0.53
VPS28-215ENST00000531924 MRIQ9BWK5 157 aa18.35■□□□□ 0.53
VPS28-215ENST00000531924 R3HDMLQ9H3Y0 253 aa18.35■□□□□ 0.53
VPS28-215ENST00000531924 LRRFIP2Q9Y608 721 aaKnown RBP18.35■□□□□ 0.53
VPS28-215ENST00000531924 ECM29Q5VYK3 1845 aa18.35■□□□□ 0.53
VPS28-215ENST00000531924 CIAO1O76071 339 aa18.34■□□□□ 0.53
VPS28-215ENST00000531924 FBXO46Q6PJ61 603 aaPredicted RBP18.34■□□□□ 0.53
VPS28-215ENST00000531924 TEPSINQ96N21 525 aa18.34■□□□□ 0.53
VPS28-215ENST00000531924 IGF2BP3O00425 579 aaKnown RBP eCLIP18.33■□□□□ 0.52
VPS28-215ENST00000531924 IL15P40933 162 aaPredicted RBP18.33■□□□□ 0.52
VPS28-215ENST00000531924 HHIPL2Q6UWX4 724 aa18.33■□□□□ 0.52
VPS28-215ENST00000531924 ATG9AQ7Z3C6 839 aa18.33■□□□□ 0.52
VPS28-215ENST00000531924 CDAN1Q8IWY9 1227 aa18.33■□□□□ 0.52
VPS28-215ENST00000531924 WDHD1O75717 1129 aaPredicted RBP18.32■□□□□ 0.52
VPS28-215ENST00000531924 GJA5P36382 358 aa18.32■□□□□ 0.52
VPS28-215ENST00000531924 RARSP54136 660 aaKnown RBP18.32■□□□□ 0.52
VPS28-215ENST00000531924 VGLL4Q14135 290 aa18.32■□□□□ 0.52
VPS28-215ENST00000531924 FKBP1CQ5VVH2 108 aa18.32■□□□□ 0.52
VPS28-215ENST00000531924 FAM83AQ86UY5 434 aa18.32■□□□□ 0.52
VPS28-215ENST00000531924 IPO8O15397 1037 aaKnown RBP18.31■□□□□ 0.52
VPS28-215ENST00000531924 LDHBP07195 334 aaKnown RBP18.31■□□□□ 0.52
VPS28-215ENST00000531924 GNAI3P08754 354 aa18.31■□□□□ 0.52
VPS28-215ENST00000531924 GTF2A2P52657 109 aa18.31■□□□□ 0.52
VPS28-215ENST00000531924 DCAF15Q66K64 600 aa18.31■□□□□ 0.52
VPS28-215ENST00000531924 APOBEC3HQ6NTF7 200 aaKnown RBP18.31■□□□□ 0.52
VPS28-215ENST00000531924 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.31■□□□□ 0.52
VPS28-215ENST00000531924 OTUD5Q96G74 571 aa18.31■□□□□ 0.52
VPS28-215ENST00000531924 ERO1AQ96HE7 468 aa18.31■□□□□ 0.52
VPS28-215ENST00000531924 TRIM17Q9Y577 477 aa18.31■□□□□ 0.52
VPS28-215ENST00000531924 CRHR2Q13324 411 aa18.3■□□□□ 0.52
VPS28-215ENST00000531924 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.3■□□□□ 0.52
VPS28-215ENST00000531924 ARHGAP45Q92619 1136 aa18.3■□□□□ 0.52
VPS28-215ENST00000531924 WRNIP1Q96S55 665 aa18.3■□□□□ 0.52
VPS28-215ENST00000531924 MEIS3Q99687 375 aa18.3■□□□□ 0.52
VPS28-215ENST00000531924 DENND2AQ9ULE3 1009 aa18.3■□□□□ 0.52
VPS28-215ENST00000531924 ARAP2Q8WZ64 1704 aa18.29■□□□□ 0.52
VPS28-215ENST00000531924 CCL15-CCL14A0A0B4J2E2 113 aa18.29■□□□□ 0.52
VPS28-215ENST00000531924 TESPA1A2RU30 521 aaPredicted RBP18.29■□□□□ 0.52
VPS28-215ENST00000531924 SEMA3EO15041 775 aa18.29■□□□□ 0.52
VPS28-215ENST00000531924 CCL15Q16663 113 aa18.29■□□□□ 0.52
VPS28-215ENST00000531924 CNKSR2Q8WXI2 1034 aa18.29■□□□□ 0.52
VPS28-215ENST00000531924 PA2G4Q9UQ80 394 aaKnown RBP18.29■□□□□ 0.52
VPS28-215ENST00000531924 SRGAP3O43295 1099 aa18.28■□□□□ 0.52
VPS28-215ENST00000531924 SP3Q02447 781 aa18.28■□□□□ 0.52
VPS28-215ENST00000531924 ARHGEF6Q15052 776 aa18.28■□□□□ 0.52
VPS28-215ENST00000531924 INTS3Q68E01 1043 aaKnown RBP18.28■□□□□ 0.52
VPS28-215ENST00000531924 ZGPATQ8N5A5 531 aaKnown RBP18.28■□□□□ 0.52
VPS28-215ENST00000531924 FRAT1Q92837 279 aaPredicted RBP18.28■□□□□ 0.52
VPS28-215ENST00000531924 PTPN18Q99952 460 aa18.28■□□□□ 0.52
VPS28-215ENST00000531924 ZFYVE28Q9HCC9 887 aa18.28■□□□□ 0.52
VPS28-215ENST00000531924 COPRSQ9NQ92 184 aa18.28■□□□□ 0.52
VPS28-215ENST00000531924 TCP10Q12799 353 aa18.27■□□□□ 0.52
VPS28-215ENST00000531924 TAF1CQ15572 869 aaPredicted RBP18.27■□□□□ 0.52
VPS28-215ENST00000531924 DIXDC1Q155Q3 683 aa18.27■□□□□ 0.52
VPS28-215ENST00000531924 OTOP1Q7RTM1 612 aa18.27■□□□□ 0.52
VPS28-215ENST00000531924 ERO1BQ86YB8 467 aa18.27■□□□□ 0.52
VPS28-215ENST00000531924 CD99L2Q8TCZ2 262 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms