RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 HP1BP3Q5SSJ5 553 aaPredicted RBP6.48□□□□□ -1.37
CD44-233ENST00000531141 MEI1Q5TIA1 1274 aa6.48□□□□□ -1.37
CD44-233ENST00000531141 HGSNATQ68CP4 663 aa6.48□□□□□ -1.37
CD44-233ENST00000531141 GPAT2Q6NUI2 795 aa6.48□□□□□ -1.37
CD44-233ENST00000531141 LENG1Q96BZ8 264 aaPredicted RBP6.48□□□□□ -1.37
CD44-233ENST00000531141 NECAB3Q96P71 396 aaPredicted RBP6.48□□□□□ -1.37
CD44-233ENST00000531141 TRIM56Q9BRZ2 755 aaKnown RBP6.48□□□□□ -1.37
CD44-233ENST00000531141 C9orf172C9J069 976 aa6.47□□□□□ -1.37
CD44-233ENST00000531141 ENC1O14682 589 aa6.47□□□□□ -1.37
CD44-233ENST00000531141 FBXO24O75426 580 aa6.47□□□□□ -1.37
CD44-233ENST00000531141 CYP11A1P05108 521 aa6.47□□□□□ -1.37
CD44-233ENST00000531141 TAF1CQ15572 869 aaPredicted RBP6.47□□□□□ -1.37
CD44-233ENST00000531141 GRIK4Q16099 956 aa6.47□□□□□ -1.37
CD44-233ENST00000531141 SV2BQ7L1I2 683 aa6.47□□□□□ -1.37
CD44-233ENST00000531141 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.47□□□□□ -1.37
CD44-233ENST00000531141 MRRFQ96E11 262 aaKnown RBP6.47□□□□□ -1.37
CD44-233ENST00000531141 USP26Q9BXU7 913 aa6.47□□□□□ -1.37
CD44-233ENST00000531141 SAMM50Q9Y512 469 aa6.47□□□□□ -1.37
CD44-233ENST00000531141 LOC100289279A0A1B0GTE1 492 aa6.46□□□□□ -1.38
CD44-233ENST00000531141 KRBA1A5PL33 1030 aa6.46□□□□□ -1.38
CD44-233ENST00000531141 UNCXA6NJT0 531 aa6.46□□□□□ -1.38
CD44-233ENST00000531141 RECKO95980 971 aa6.46□□□□□ -1.38
CD44-233ENST00000531141 SELPP16109 830 aa6.46□□□□□ -1.38
CD44-233ENST00000531141 CCDC85BQ15834 202 aaPredicted RBP6.46□□□□□ -1.38
CD44-233ENST00000531141 DUOXA2Q1HG44 320 aa6.46□□□□□ -1.38
CD44-233ENST00000531141 XP32Q5T750 250 aa6.46□□□□□ -1.38
CD44-233ENST00000531141 SHISA2Q6UWI4 295 aa6.46□□□□□ -1.38
CD44-233ENST00000531141 ACAD11Q709F0 780 aa6.46□□□□□ -1.38
CD44-233ENST00000531141 SULF2Q8IWU5 870 aa6.46□□□□□ -1.38
CD44-233ENST00000531141 UBASH3BQ8TF42 649 aa6.46□□□□□ -1.38
CD44-233ENST00000531141 CORO1BQ9BR76 489 aa6.46□□□□□ -1.38
CD44-233ENST00000531141 NOC4LQ9BVI4 516 aaKnown RBP6.46□□□□□ -1.38
CD44-233ENST00000531141 KCNK4Q9NYG8 393 aa6.46□□□□□ -1.38
CD44-233ENST00000531141 USP21Q9UK80 565 aa6.46□□□□□ -1.38
CD44-233ENST00000531141 USP31Q70CQ4 1352 aa6.45□□□□□ -1.38
CD44-233ENST00000531141 WISP1O95388 367 aa6.45□□□□□ -1.38
CD44-233ENST00000531141 CELA3AP09093 270 aa6.45□□□□□ -1.38
CD44-233ENST00000531141 NME2P22392 152 aa6.45□□□□□ -1.38
CD44-233ENST00000531141 ZNF157P51786 506 aaPredicted RBP6.45□□□□□ -1.38
CD44-233ENST00000531141 ADGRE1Q14246 886 aa6.45□□□□□ -1.38
CD44-233ENST00000531141 MBTPS1Q14703 1052 aa6.45□□□□□ -1.38
CD44-233ENST00000531141 POU4F3Q15319 338 aa6.45□□□□□ -1.38
CD44-233ENST00000531141 KIAA1522Q9P206 1035 aaPredicted RBP6.45□□□□□ -1.38
CD44-233ENST00000531141 F8W735 103 aaPredicted RBP6.44□□□□□ -1.38
CD44-233ENST00000531141 DDX3YO15523 660 aaKnown RBP6.44□□□□□ -1.38
CD44-233ENST00000531141 GSTP1P09211 210 aaKnown RBP6.44□□□□□ -1.38
CD44-233ENST00000531141 RLBP1P12271 317 aa6.44□□□□□ -1.38
CD44-233ENST00000531141 MAOBP27338 520 aa6.44□□□□□ -1.38
CD44-233ENST00000531141 CHRNA4P43681 627 aa6.44□□□□□ -1.38
CD44-233ENST00000531141 RBM25P49756 843 aaKnown RBP6.44□□□□□ -1.38
CD44-233ENST00000531141 TSNAXIP1Q2TAA8 658 aa6.44□□□□□ -1.38
CD44-233ENST00000531141 Q6ZS46 218 aa6.44□□□□□ -1.38
CD44-233ENST00000531141 TMEM130Q8N3G9 435 aa6.44□□□□□ -1.38
CD44-233ENST00000531141 RUSC1Q9BVN2 902 aa6.44□□□□□ -1.38
CD44-233ENST00000531141 EMILIN2Q9BXX0 1053 aa6.44□□□□□ -1.38
CD44-233ENST00000531141 RNF208Q9H0X6 261 aa6.44□□□□□ -1.38
CD44-233ENST00000531141 AKTIPQ9H8T0 292 aa6.44□□□□□ -1.38
CD44-233ENST00000531141 METTL5Q9NRN9 209 aaKnown RBP6.44□□□□□ -1.38
CD44-233ENST00000531141 KRT82Q9NSB4 513 aa6.44□□□□□ -1.38
CD44-233ENST00000531141 PCNX4Q63HM2 1172 aa6.43□□□□□ -1.38
CD44-233ENST00000531141 KIAA1211Q6ZU35 1233 aa6.43□□□□□ -1.38
CD44-233ENST00000531141 TXNRD3Q86VQ6 643 aa6.43□□□□□ -1.38
CD44-233ENST00000531141 PAGE1O75459 146 aa6.42□□□□□ -1.38
CD44-233ENST00000531141 ARNTP27540 789 aa6.42□□□□□ -1.38
CD44-233ENST00000531141 RPS26P62854 115 aaKnown RBP6.42□□□□□ -1.38
CD44-233ENST00000531141 LRRC14Q15048 493 aa6.42□□□□□ -1.38
CD44-233ENST00000531141 SCARA3Q6AZY7 606 aa6.42□□□□□ -1.38
CD44-233ENST00000531141 TTBK2Q6IQ55 1244 aa6.42□□□□□ -1.38
CD44-233ENST00000531141 PDZD3Q86UT5 571 aa6.42□□□□□ -1.38
CD44-233ENST00000531141 CD163Q86VB7 1156 aa6.42□□□□□ -1.38
CD44-233ENST00000531141 ZNF428Q96B54 188 aa6.42□□□□□ -1.38
CD44-233ENST00000531141 CEP41Q9BYV8 373 aa6.42□□□□□ -1.38
CD44-233ENST00000531141 BACH2Q9BYV9 841 aa6.42□□□□□ -1.38
CD44-233ENST00000531141 MEGF11A6BM72 1044 aa6.41□□□□□ -1.38
CD44-233ENST00000531141 C1QTNF9BB2RNN3 333 aa6.41□□□□□ -1.38
CD44-233ENST00000531141 SCAMP3O14828 347 aaKnown RBP6.41□□□□□ -1.38
CD44-233ENST00000531141 ZNF76P36508 570 aa6.41□□□□□ -1.38
CD44-233ENST00000531141 LIG3P49916 1009 aa6.41□□□□□ -1.38
CD44-233ENST00000531141 ZNF252P-AS1Q0IIN9 211 aa6.41□□□□□ -1.38
CD44-233ENST00000531141 PWP1Q13610 501 aa6.41□□□□□ -1.38
CD44-233ENST00000531141 PDE3AQ14432 1141 aa6.41□□□□□ -1.38
CD44-233ENST00000531141 PLA2G4EQ3MJ16 856 aa6.41□□□□□ -1.38
CD44-233ENST00000531141 ANKRD34AQ69YU3 496 aa6.41□□□□□ -1.38
CD44-233ENST00000531141 LLGL2Q6P1M3 1020 aa6.41□□□□□ -1.38
CD44-233ENST00000531141 TMEM87AQ8NBN3 555 aa6.41□□□□□ -1.38
CD44-233ENST00000531141 TMPRSS13Q9BYE2 586 aa6.41□□□□□ -1.38
CD44-233ENST00000531141 SUGCTQ9HAC7 445 aa6.41□□□□□ -1.38
CD44-233ENST00000531141 TRIM37O94972 964 aa6.4□□□□□ -1.38
CD44-233ENST00000531141 ECEL1O95672 775 aa6.4□□□□□ -1.38
CD44-233ENST00000531141 CTSBP07858 339 aa6.4□□□□□ -1.38
CD44-233ENST00000531141 NOS3P29474 1203 aa6.4□□□□□ -1.38
CD44-233ENST00000531141 FANCCQ00597 558 aa6.4□□□□□ -1.38
CD44-233ENST00000531141 LDLRAD1Q5T700 205 aa6.4□□□□□ -1.38
CD44-233ENST00000531141 FDX2Q6P4F2 183 aa6.4□□□□□ -1.38
CD44-233ENST00000531141 HS2ST1Q7LGA3 356 aa6.4□□□□□ -1.38
CD44-233ENST00000531141 ERMP1Q7Z2K6 904 aa6.4□□□□□ -1.38
CD44-233ENST00000531141 AGGF1Q8N302 714 aaeCLIP6.4□□□□□ -1.38
CD44-233ENST00000531141 STK35Q8TDR2 534 aa6.4□□□□□ -1.38
CD44-233ENST00000531141 WFDC12Q8WWY7 111 aa6.4□□□□□ -1.38
CD44-233ENST00000531141 CBX8Q9HC52 389 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms