RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 OPTNQ96CV9 577 aa10.73□□□□□ -0.69
CD44-232ENST00000531118 CCDC85AQ96PX6 553 aaPredicted RBP10.73□□□□□ -0.69
CD44-232ENST00000531118 COL25A1Q9BXS0 654 aaPredicted RBP10.73□□□□□ -0.69
CD44-232ENST00000531118 COA1Q9GZY4 146 aa10.73□□□□□ -0.69
CD44-232ENST00000531118 ZFYVE28Q9HCC9 887 aa10.73□□□□□ -0.69
CD44-232ENST00000531118 GPHNQ9NQX3 736 aaPredicted RBP10.73□□□□□ -0.69
CD44-232ENST00000531118 TRIM28Q13263 835 aaKnown RBP10.72□□□□□ -0.69
CD44-232ENST00000531118 ANKRD13DQ6ZTN6 518 aa10.72□□□□□ -0.69
CD44-232ENST00000531118 ZBTB38Q8NAP3 1195 aaPredicted RBP10.72□□□□□ -0.69
CD44-232ENST00000531118 ELP3Q9H9T3 547 aa10.72□□□□□ -0.69
CD44-232ENST00000531118 BABAM1Q9NWV8 329 aa10.72□□□□□ -0.69
CD44-232ENST00000531118 NR2E3Q9Y5X4 410 aa10.72□□□□□ -0.69
CD44-232ENST00000531118 CCL15-CCL14A0A0B4J2E2 113 aa10.71□□□□□ -0.69
CD44-232ENST00000531118 CLRN2A0PK11 232 aa10.71□□□□□ -0.69
CD44-232ENST00000531118 FARP2O94887 1054 aaPredicted RBP10.71□□□□□ -0.69
CD44-232ENST00000531118 HSP90B1P14625 803 aaKnown RBP10.71□□□□□ -0.69
CD44-232ENST00000531118 LACTBP83111 547 aaPredicted RBP10.71□□□□□ -0.69
CD44-232ENST00000531118 CCL15Q16663 113 aa10.71□□□□□ -0.69
CD44-232ENST00000531118 NBPF12Q5TAG4 269 aaPredicted RBP10.71□□□□□ -0.69
CD44-232ENST00000531118 HDGFL1Q5TGJ6 251 aa10.71□□□□□ -0.69
CD44-232ENST00000531118 FAM43AQ8N2R8 423 aa10.71□□□□□ -0.69
CD44-232ENST00000531118 NKX2-3Q8TAU0 364 aa10.71□□□□□ -0.69
CD44-232ENST00000531118 AOX1Q06278 1338 aa10.7□□□□□ -0.7
CD44-232ENST00000531118 PDE8AO60658 829 aa10.7□□□□□ -0.7
CD44-232ENST00000531118 USP2O75604 605 aaPredicted RBP10.7□□□□□ -0.7
CD44-232ENST00000531118 PCCAP05165 728 aaPredicted RBP10.7□□□□□ -0.7
CD44-232ENST00000531118 KLRK1P26718 216 aa10.7□□□□□ -0.7
CD44-232ENST00000531118 GJA8P48165 433 aa10.7□□□□□ -0.7
CD44-232ENST00000531118 CCT4P50991 539 aaKnown RBP10.7□□□□□ -0.7
CD44-232ENST00000531118 PRMT2P55345 433 aa10.7□□□□□ -0.7
CD44-232ENST00000531118 MFSD10Q14728 455 aa10.7□□□□□ -0.7
CD44-232ENST00000531118 KIF22Q14807 665 aa10.7□□□□□ -0.7
CD44-232ENST00000531118 DLGAP5Q15398 846 aa10.7□□□□□ -0.7
CD44-232ENST00000531118 SUPT20HL1Q3ZLR7 823 aa10.7□□□□□ -0.7
CD44-232ENST00000531118 TXNRD3Q86VQ6 643 aa10.7□□□□□ -0.7
CD44-232ENST00000531118 MTMR14Q8NCE2 650 aa10.7□□□□□ -0.7
CD44-232ENST00000531118 CDC5LQ99459 802 aaKnown RBP10.7□□□□□ -0.7
CD44-232ENST00000531118 VEZTQ9HBM0 779 aa10.7□□□□□ -0.7
CD44-232ENST00000531118 STXBP5LQ9Y2K9 1186 aa10.7□□□□□ -0.7
CD44-232ENST00000531118 PCDHAC2Q9Y5I4 1007 aa10.7□□□□□ -0.7
CD44-232ENST00000531118 TTC28Q96AY4 2481 aa10.7□□□□□ -0.7
CD44-232ENST00000531118 SPTBN5Q9NRC6 3674 aaKnown RBP10.7□□□□□ -0.7
CD44-232ENST00000531118 C2orf72A6NCS6 295 aa10.69□□□□□ -0.7
CD44-232ENST00000531118 GNRH1P01148 92 aa10.69□□□□□ -0.7
CD44-232ENST00000531118 GJB1P08034 283 aa10.69□□□□□ -0.7
CD44-232ENST00000531118 GTF2IP78347 998 aa10.69□□□□□ -0.7
CD44-232ENST00000531118 TTLL5Q6EMB2 1281 aa10.69□□□□□ -0.7
CD44-232ENST00000531118 GPR153Q6NV75 609 aa10.69□□□□□ -0.7
CD44-232ENST00000531118 TMEM92Q6UXU6 159 aa10.69□□□□□ -0.7
CD44-232ENST00000531118 Q7L0L9 218 aa10.69□□□□□ -0.7
CD44-232ENST00000531118 CERS5Q8N5B7 392 aa10.69□□□□□ -0.7
CD44-232ENST00000531118 MINPP1Q9UNW1 487 aa10.69□□□□□ -0.7
CD44-232ENST00000531118 VCANP13611 3396 aa10.68□□□□□ -0.7
CD44-232ENST00000531118 TLR2O60603 784 aa10.68□□□□□ -0.7
CD44-232ENST00000531118 HOXB7P09629 217 aa10.68□□□□□ -0.7
CD44-232ENST00000531118 CCL5P13501 91 aa10.68□□□□□ -0.7
CD44-232ENST00000531118 GTF2A2P52657 109 aa10.68□□□□□ -0.7
CD44-232ENST00000531118 CTSWP56202 376 aa10.68□□□□□ -0.7
CD44-232ENST00000531118 VGLL4Q14135 290 aa10.68□□□□□ -0.7
CD44-232ENST00000531118 DEFB123Q8N688 67 aa10.68□□□□□ -0.7
CD44-232ENST00000531118 DDX27Q96GQ7 796 aaKnown RBP10.68□□□□□ -0.7
CD44-232ENST00000531118 MYD88Q99836 296 aa10.68□□□□□ -0.7
CD44-232ENST00000531118 LARP6Q9BRS8 491 aaKnown RBP10.68□□□□□ -0.7
CD44-232ENST00000531118 WDR70Q9NW82 654 aa10.68□□□□□ -0.7
CD44-232ENST00000531118 DBF4Q9UBU7 674 aaPredicted RBP10.68□□□□□ -0.7
CD44-232ENST00000531118 MYO1BO43795 1136 aa10.67□□□□□ -0.7
CD44-232ENST00000531118 CTGFP29279 349 aa10.67□□□□□ -0.7
CD44-232ENST00000531118 GRK4P32298 578 aa10.67□□□□□ -0.7
CD44-232ENST00000531118 FOXK1P85037 733 aa10.67□□□□□ -0.7
CD44-232ENST00000531118 RASA3Q14644 834 aa10.67□□□□□ -0.7
CD44-232ENST00000531118 CFAP100Q494V2 611 aa10.67□□□□□ -0.7
CD44-232ENST00000531118 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.67□□□□□ -0.7
CD44-232ENST00000531118 CDAN1Q8IWY9 1227 aa10.67□□□□□ -0.7
CD44-232ENST00000531118 SLAIN1Q8ND83 568 aa10.67□□□□□ -0.7
CD44-232ENST00000531118 ZCCHC17Q9NP64 241 aaKnown RBP10.67□□□□□ -0.7
CD44-232ENST00000531118 BSDC1Q9NW68 430 aaPredicted RBP10.67□□□□□ -0.7
CD44-232ENST00000531118 HYPKQ9NX55 129 aa10.67□□□□□ -0.7
CD44-232ENST00000531118 STAP2Q9UGK3 403 aa10.67□□□□□ -0.7
CD44-232ENST00000531118 SRRDQ9UH36 339 aa10.67□□□□□ -0.7
CD44-232ENST00000531118 DDX60LQ5H9U9 1706 aaKnown RBP10.67□□□□□ -0.7
CD44-232ENST00000531118 MYPNQ86TC9 1320 aa10.66□□□□□ -0.7
CD44-232ENST00000531118 EVI5O60447 810 aa10.66□□□□□ -0.7
CD44-232ENST00000531118 WDHD1O75717 1129 aaPredicted RBP10.66□□□□□ -0.7
CD44-232ENST00000531118 OSBPP22059 807 aa10.66□□□□□ -0.7
CD44-232ENST00000531118 RIPK4P57078 832 aa10.66□□□□□ -0.7
CD44-232ENST00000531118 LMOD3Q0VAK6 560 aa10.66□□□□□ -0.7
CD44-232ENST00000531118 RIC3Q7Z5B4 369 aa10.66□□□□□ -0.7
CD44-232ENST00000531118 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.66□□□□□ -0.7
CD44-232ENST00000531118 CCDC191Q8NCU4 936 aa10.66□□□□□ -0.7
CD44-232ENST00000531118 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.66□□□□□ -0.7
CD44-232ENST00000531118 RAET1EQ8TD07 263 aa10.66□□□□□ -0.7
CD44-232ENST00000531118 U2AF1L4Q8WU68 220 aaKnown RBP10.66□□□□□ -0.7
CD44-232ENST00000531118 JARID2Q92833 1246 aaPredicted RBP10.66□□□□□ -0.7
CD44-232ENST00000531118 RNF208Q9H0X6 261 aa10.66□□□□□ -0.7
CD44-232ENST00000531118 CWC25Q9NXE8 425 aaPredicted RBP10.66□□□□□ -0.7
CD44-232ENST00000531118 LEMD3Q9Y2U8 911 aa10.66□□□□□ -0.7
CD44-232ENST00000531118 RIPOR2Q9Y4F9 1068 aa10.66□□□□□ -0.7
CD44-232ENST00000531118 ADGRA2Q96PE1 1338 aa10.65□□□□□ -0.7
CD44-232ENST00000531118 SPDYE5A6NIY4 337 aa10.65□□□□□ -0.7
CD44-232ENST00000531118 BTBD19C9JJ37 291 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms