RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 C4AP0C0L4 1744 aa17.38■□□□□ 0.37
ECHDC1-220ENST00000528402 NPHP1O15259 732 aa17.38■□□□□ 0.37
ECHDC1-220ENST00000528402 APOBRQ0VD83 1088 aa17.38■□□□□ 0.37
ECHDC1-220ENST00000528402 FAM182BQ5T319 152 aa17.38■□□□□ 0.37
ECHDC1-220ENST00000528402 NAPBQ9H115 298 aa17.38■□□□□ 0.37
ECHDC1-220ENST00000528402 ELP1O95163 1332 aa17.37■□□□□ 0.37
ECHDC1-220ENST00000528402 H3BQV1 296 aa17.37■□□□□ 0.37
ECHDC1-220ENST00000528402 TM4SF1P30408 202 aa17.37■□□□□ 0.37
ECHDC1-220ENST00000528402 HAND2P61296 217 aa17.37■□□□□ 0.37
ECHDC1-220ENST00000528402 IFFO2Q5TF58 517 aa17.37■□□□□ 0.37
ECHDC1-220ENST00000528402 NSUN7Q8NE18 718 aaKnown RBP17.37■□□□□ 0.37
ECHDC1-220ENST00000528402 FAM84BQ96KN1 310 aaPredicted RBP17.37■□□□□ 0.37
ECHDC1-220ENST00000528402 LRRC2Q9BYS8 371 aa17.37■□□□□ 0.37
ECHDC1-220ENST00000528402 KRT23Q9C075 422 aa17.37■□□□□ 0.37
ECHDC1-220ENST00000528402 CNPY2Q9Y2B0 182 aa17.37■□□□□ 0.37
ECHDC1-220ENST00000528402 LEMD3Q9Y2U8 911 aa17.37■□□□□ 0.37
ECHDC1-220ENST00000528402 SNAP23O00161 211 aa17.36■□□□□ 0.37
ECHDC1-220ENST00000528402 MBD4O95243 580 aa17.36■□□□□ 0.37
ECHDC1-220ENST00000528402 LRSAM1Q6UWE0 723 aa17.36■□□□□ 0.37
ECHDC1-220ENST00000528402 RNF41Q9H4P4 317 aaPredicted RBP17.36■□□□□ 0.37
ECHDC1-220ENST00000528402 HIBADHP31937 336 aaKnown RBP17.35■□□□□ 0.37
ECHDC1-220ENST00000528402 GYG1P46976 350 aa17.35■□□□□ 0.37
ECHDC1-220ENST00000528402 GRAPQ13588 217 aa17.35■□□□□ 0.37
ECHDC1-220ENST00000528402 NFIXQ14938 502 aa17.35■□□□□ 0.37
ECHDC1-220ENST00000528402 GIMAP6Q6P9H5 292 aa17.35■□□□□ 0.37
ECHDC1-220ENST00000528402 CNBD1Q8NA66 436 aa17.35■□□□□ 0.37
ECHDC1-220ENST00000528402 GRAPLQ8TC17 118 aaPredicted RBP17.35■□□□□ 0.37
ECHDC1-220ENST00000528402 ANP32BQ92688 251 aaKnown RBP17.35■□□□□ 0.37
ECHDC1-220ENST00000528402 CFAP45Q9UL16 551 aa17.35■□□□□ 0.37
ECHDC1-220ENST00000528402 ANGEL1Q9UNK9 670 aaKnown RBP17.35■□□□□ 0.37
ECHDC1-220ENST00000528402 UBR3Q6ZT12 1888 aa17.35■□□□□ 0.37
ECHDC1-220ENST00000528402 A0A0G2JLW4 131 aa17.34■□□□□ 0.37
ECHDC1-220ENST00000528402 GSG1L2A8MUP6 293 aa17.34■□□□□ 0.37
ECHDC1-220ENST00000528402 CYP7A1P22680 504 aa17.34■□□□□ 0.37
ECHDC1-220ENST00000528402 DNM1Q05193 864 aaKnown RBP17.34■□□□□ 0.37
ECHDC1-220ENST00000528402 SPTY2D1Q68D10 685 aaPredicted RBP17.34■□□□□ 0.37
ECHDC1-220ENST00000528402 CDC37L1Q7L3B6 337 aa17.34■□□□□ 0.37
ECHDC1-220ENST00000528402 GAS2L3Q86XJ1 694 aa17.34■□□□□ 0.37
ECHDC1-220ENST00000528402 TMTC2Q8N394 836 aa17.34■□□□□ 0.37
ECHDC1-220ENST00000528402 SALL1Q9NSC2 1324 aa17.34■□□□□ 0.37
ECHDC1-220ENST00000528402 LRRC4BQ9NT99 713 aa17.34■□□□□ 0.37
ECHDC1-220ENST00000528402 RAI14Q9P0K7 980 aa17.34■□□□□ 0.37
ECHDC1-220ENST00000528402 TMEM63CQ9P1W3 806 aa17.34■□□□□ 0.37
ECHDC1-220ENST00000528402 SLC4A4Q9Y6R1 1079 aa17.34■□□□□ 0.37
ECHDC1-220ENST00000528402 TAF1P21675 1872 aa17.33■□□□□ 0.37
ECHDC1-220ENST00000528402 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.33■□□□□ 0.36
ECHDC1-220ENST00000528402 MAGEB6P1A0A0J9YX57 407 aa17.33■□□□□ 0.36
ECHDC1-220ENST00000528402 PTPDC1A2A3K4 754 aa17.33■□□□□ 0.36
ECHDC1-220ENST00000528402 JAK2O60674 1132 aa17.33■□□□□ 0.36
ECHDC1-220ENST00000528402 CDKL5O76039 1030 aa17.33■□□□□ 0.36
ECHDC1-220ENST00000528402 PCP11498 1178 aaKnown RBP17.33■□□□□ 0.36
ECHDC1-220ENST00000528402 LIFRP42702 1097 aa17.33■□□□□ 0.36
ECHDC1-220ENST00000528402 NT5C2P49902 561 aa17.33■□□□□ 0.36
ECHDC1-220ENST00000528402 ST5P78524 1137 aa17.33■□□□□ 0.36
ECHDC1-220ENST00000528402 AKNAD1Q5T1N1 836 aa17.33■□□□□ 0.36
ECHDC1-220ENST00000528402 CPLX2Q6PUV4 134 aaKnown RBP17.33■□□□□ 0.36
ECHDC1-220ENST00000528402 C15orf52Q6ZUT6 534 aaKnown RBP17.33■□□□□ 0.36
ECHDC1-220ENST00000528402 STAG1Q8WVM7 1258 aa17.33■□□□□ 0.36
ECHDC1-220ENST00000528402 ARMT1Q9H993 441 aa17.33■□□□□ 0.36
ECHDC1-220ENST00000528402 CHD4Q14839 1912 aa17.33■□□□□ 0.36
ECHDC1-220ENST00000528402 KLF18A0A0U1RQI7 1052 aa17.32■□□□□ 0.36
ECHDC1-220ENST00000528402 CTDNEP1O95476 244 aa17.32■□□□□ 0.36
ECHDC1-220ENST00000528402 TDO2P48775 406 aa17.32■□□□□ 0.36
ECHDC1-220ENST00000528402 ANTXR2P58335 489 aa17.32■□□□□ 0.36
ECHDC1-220ENST00000528402 CCDC183Q5T5S1 534 aa17.32■□□□□ 0.36
ECHDC1-220ENST00000528402 ZNF772Q68DY9 489 aaPredicted RBP17.32■□□□□ 0.36
ECHDC1-220ENST00000528402 MFSD6Q6ZSS7 791 aa17.32■□□□□ 0.36
ECHDC1-220ENST00000528402 CHAMP1Q96JM3 812 aa17.32■□□□□ 0.36
ECHDC1-220ENST00000528402 ABCF2Q9UG63 623 aa17.32■□□□□ 0.36
ECHDC1-220ENST00000528402 ANAPC4Q9UJX5 808 aa17.32■□□□□ 0.36
ECHDC1-220ENST00000528402 MYH13Q9UKX3 1938 aa17.32■□□□□ 0.36
ECHDC1-220ENST00000528402 TIAM2Q8IVF5 1701 aa17.31■□□□□ 0.36
ECHDC1-220ENST00000528402 SH2B2O14492 632 aaPredicted RBP17.31■□□□□ 0.36
ECHDC1-220ENST00000528402 CPLX1O14810 134 aa17.31■□□□□ 0.36
ECHDC1-220ENST00000528402 FIBPO43427 364 aa17.31■□□□□ 0.36
ECHDC1-220ENST00000528402 GADD45BO75293 160 aaPredicted RBP17.31■□□□□ 0.36
ECHDC1-220ENST00000528402 CCT2P78371 535 aaKnown RBP17.31■□□□□ 0.36
ECHDC1-220ENST00000528402 RESTQ13127 1097 aa17.31■□□□□ 0.36
ECHDC1-220ENST00000528402 SART3Q15020 963 aaKnown RBP17.31■□□□□ 0.36
ECHDC1-220ENST00000528402 FOXD4L6Q3SYB3 417 aaPredicted RBP17.31■□□□□ 0.36
ECHDC1-220ENST00000528402 FOXD4L3Q6VB84 417 aaPredicted RBP17.31■□□□□ 0.36
ECHDC1-220ENST00000528402 CHST3Q7LGC8 479 aa17.31■□□□□ 0.36
ECHDC1-220ENST00000528402 SGMS1Q86VZ5 419 aa17.31■□□□□ 0.36
ECHDC1-220ENST00000528402 TBC1D10CQ8IV04 446 aa17.31■□□□□ 0.36
ECHDC1-220ENST00000528402 NBPF3Q9H094 633 aa17.31■□□□□ 0.36
ECHDC1-220ENST00000528402 GDPD2Q9HCC8 539 aa17.31■□□□□ 0.36
ECHDC1-220ENST00000528402 NAP1L2Q9ULW6 460 aaPredicted RBP17.31■□□□□ 0.36
ECHDC1-220ENST00000528402 GYS1P13807 737 aa17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 RCAN1P53805 252 aa17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 RBM6P78332 1123 aaKnown RBP17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 SMIM5Q71RC9 77 aa17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 TMC4Q7Z404 712 aa17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 LCORLQ8N3X6 602 aa17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 DDX11Q96FC9 970 aa17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 RBM17Q96I25 401 aaKnown RBP17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 ZNF396Q96N95 335 aaPredicted RBP17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 BRIP1Q9BX63 1249 aa17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 EPB41L4AQ9HCS5 686 aaPredicted RBP17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 COL4A1P02462 1669 aa17.3■□□□□ 0.36
ECHDC1-220ENST00000528402 XDHP47989 1333 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms