RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 SH2B1Q9NRF2 756 aaPredicted RBP7.08□□□□□ -1.28
CD44-220ENST00000525688 LRRC4BQ9NT99 713 aa7.08□□□□□ -1.28
CD44-220ENST00000525688 H3BRJ5 948 aa7.07□□□□□ -1.28
CD44-220ENST00000525688 SOX1O00570 391 aaPredicted RBP7.07□□□□□ -1.28
CD44-220ENST00000525688 EPHA1P21709 976 aa7.07□□□□□ -1.28
CD44-220ENST00000525688 BAG6P46379 1132 aa7.07□□□□□ -1.28
CD44-220ENST00000525688 ZNF157P51786 506 aaPredicted RBP7.07□□□□□ -1.28
CD44-220ENST00000525688 CABP4P57796 275 aa7.07□□□□□ -1.28
CD44-220ENST00000525688 FAM160A1Q05DH4 1040 aa7.07□□□□□ -1.28
CD44-220ENST00000525688 IKBKEQ14164 716 aa7.07□□□□□ -1.28
CD44-220ENST00000525688 LRRC14Q15048 493 aa7.07□□□□□ -1.28
CD44-220ENST00000525688 FAM196AQ6ZSG2 479 aa7.07□□□□□ -1.28
CD44-220ENST00000525688 GOLM1Q8NBJ4 401 aa7.07□□□□□ -1.28
CD44-220ENST00000525688 DDX54Q8TDD1 881 aaKnown RBP7.07□□□□□ -1.28
CD44-220ENST00000525688 SLC16A10Q8TF71 515 aa7.07□□□□□ -1.28
CD44-220ENST00000525688 DHX38Q92620 1227 aaKnown RBP7.07□□□□□ -1.28
CD44-220ENST00000525688 WNT8BQ93098 351 aa7.07□□□□□ -1.28
CD44-220ENST00000525688 ACDQ96AP0 544 aa7.07□□□□□ -1.28
CD44-220ENST00000525688 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.07□□□□□ -1.28
CD44-220ENST00000525688 EMILIN2Q9BXX0 1053 aa7.07□□□□□ -1.28
CD44-220ENST00000525688 LRRC3Q9BY71 257 aa7.07□□□□□ -1.28
CD44-220ENST00000525688 ERBB4Q15303 1308 aa7.06□□□□□ -1.28
CD44-220ENST00000525688 ARNTP27540 789 aa7.06□□□□□ -1.28
CD44-220ENST00000525688 SOX9P48436 509 aa7.06□□□□□ -1.28
CD44-220ENST00000525688 KRT76Q01546 638 aa7.06□□□□□ -1.28
CD44-220ENST00000525688 SNAP47Q5SQN1 464 aa7.06□□□□□ -1.28
CD44-220ENST00000525688 GDF6Q6KF10 455 aaPredicted RBP7.06□□□□□ -1.28
CD44-220ENST00000525688 C1orf229Q6ZS94 237 aaPredicted RBP7.06□□□□□ -1.28
CD44-220ENST00000525688 SLITRK4Q8IW52 837 aa7.06□□□□□ -1.28
CD44-220ENST00000525688 SULF2Q8IWU5 870 aa7.06□□□□□ -1.28
CD44-220ENST00000525688 NUDT8Q8WV74 236 aa7.06□□□□□ -1.28
CD44-220ENST00000525688 PRDM6Q9NQX0 595 aa7.06□□□□□ -1.28
CD44-220ENST00000525688 FAM221AA4D161 298 aa7.05□□□□□ -1.28
CD44-220ENST00000525688 ADAMTS2O95450 1211 aa7.05□□□□□ -1.28
CD44-220ENST00000525688 ALBP02768 609 aa7.05□□□□□ -1.28
CD44-220ENST00000525688 GTF2F1P35269 517 aaKnown RBP eCLIP7.05□□□□□ -1.28
CD44-220ENST00000525688 AFF1P51825 1210 aaKnown RBP7.05□□□□□ -1.28
CD44-220ENST00000525688 ZNF252P-AS1Q0IIN9 211 aa7.05□□□□□ -1.28
CD44-220ENST00000525688 AP3B2Q13367 1082 aa7.05□□□□□ -1.28
CD44-220ENST00000525688 RASIP1Q5U651 963 aa7.05□□□□□ -1.28
CD44-220ENST00000525688 ZNF787Q6DD87 383 aa7.05□□□□□ -1.28
CD44-220ENST00000525688 ILDR2Q71H61 639 aa7.05□□□□□ -1.28
CD44-220ENST00000525688 IL22RA1Q8N6P7 574 aa7.05□□□□□ -1.28
CD44-220ENST00000525688 STK35Q8TDR2 534 aa7.05□□□□□ -1.28
CD44-220ENST00000525688 GATAD2BQ8WXI9 593 aa7.05□□□□□ -1.28
CD44-220ENST00000525688 IRF7Q92985 503 aa7.05□□□□□ -1.28
CD44-220ENST00000525688 HIRIP3Q9BW71 556 aaPredicted RBP7.05□□□□□ -1.28
CD44-220ENST00000525688 MIR1-1HGQ9H1L0 117 aa7.05□□□□□ -1.28
CD44-220ENST00000525688 JPH1Q9HDC5 661 aaPredicted RBP7.05□□□□□ -1.28
CD44-220ENST00000525688 CACNA2D2Q9NY47 1150 aa7.05□□□□□ -1.28
CD44-220ENST00000525688 UBP1Q9NZI7 540 aa7.05□□□□□ -1.28
CD44-220ENST00000525688 STRIP2Q9ULQ0 834 aa7.05□□□□□ -1.28
CD44-220ENST00000525688 PPME1Q9Y570 386 aa7.05□□□□□ -1.28
CD44-220ENST00000525688 SLURP2P0DP57 97 aa7.04□□□□□ -1.28
CD44-220ENST00000525688 CRKP46108 304 aa7.04□□□□□ -1.28
CD44-220ENST00000525688 PIP4K2BP78356 416 aa7.04□□□□□ -1.28
CD44-220ENST00000525688 APOBRQ0VD83 1088 aa7.04□□□□□ -1.28
CD44-220ENST00000525688 SOGA3Q5TF21 947 aa7.04□□□□□ -1.28
CD44-220ENST00000525688 LLGL2Q6P1M3 1020 aa7.04□□□□□ -1.28
CD44-220ENST00000525688 PDZD3Q86UT5 571 aa7.04□□□□□ -1.28
CD44-220ENST00000525688 EDARADDQ8WWZ3 215 aa7.04□□□□□ -1.28
CD44-220ENST00000525688 GINM1Q9NU53 330 aa7.04□□□□□ -1.28
CD44-220ENST00000525688 PCDHB5Q9Y5E4 795 aa7.04□□□□□ -1.28
CD44-220ENST00000525688 OIP5O43482 229 aa7.03□□□□□ -1.28
CD44-220ENST00000525688 LILRB5O75023 590 aa7.03□□□□□ -1.28
CD44-220ENST00000525688 CILPO75339 1184 aa7.03□□□□□ -1.28
CD44-220ENST00000525688 F13A1P00488 732 aa7.03□□□□□ -1.28
CD44-220ENST00000525688 LMNB1P20700 586 aa7.03□□□□□ -1.28
CD44-220ENST00000525688 NASPP49321 788 aaPredicted RBP7.03□□□□□ -1.28
CD44-220ENST00000525688 MPP2Q14168 576 aa7.03□□□□□ -1.28
CD44-220ENST00000525688 BNC2Q6ZN30 1099 aaPredicted RBP7.03□□□□□ -1.28
CD44-220ENST00000525688 NKD1Q969G9 470 aa7.03□□□□□ -1.28
CD44-220ENST00000525688 GAL3ST3Q96A11 431 aa7.03□□□□□ -1.28
CD44-220ENST00000525688 BTBD6Q96KE9 485 aa7.03□□□□□ -1.28
CD44-220ENST00000525688 OSGEPQ9NPF4 335 aa7.03□□□□□ -1.28
CD44-220ENST00000525688 EFR3BQ9Y2G0 817 aa7.03□□□□□ -1.28
CD44-220ENST00000525688 STK10O94804 968 aaKnown RBP7.02□□□□□ -1.29
CD44-220ENST00000525688 TRIM37O94972 964 aa7.02□□□□□ -1.29
CD44-220ENST00000525688 GSTP1P09211 210 aaKnown RBP7.02□□□□□ -1.29
CD44-220ENST00000525688 ARL4DP49703 201 aa7.02□□□□□ -1.29
CD44-220ENST00000525688 C19orf57Q0VDD7 668 aa7.02□□□□□ -1.29
CD44-220ENST00000525688 MSL1Q68DK7 614 aa7.02□□□□□ -1.29
CD44-220ENST00000525688 FAM117BQ6P1L5 589 aa7.02□□□□□ -1.29
CD44-220ENST00000525688 CHSY3Q70JA7 882 aa7.02□□□□□ -1.29
CD44-220ENST00000525688 DPH6Q7L8W6 267 aa7.02□□□□□ -1.29
CD44-220ENST00000525688 GALNT6Q8NCL4 622 aa7.02□□□□□ -1.29
CD44-220ENST00000525688 GRIN3AQ8TCU5 1115 aa7.02□□□□□ -1.29
CD44-220ENST00000525688 DNAJC2Q99543 621 aaKnown RBP7.02□□□□□ -1.29
CD44-220ENST00000525688 NRSN2Q9GZP1 204 aa7.02□□□□□ -1.29
CD44-220ENST00000525688 LINC01387J3KSC0 135 aa7.01□□□□□ -1.29
CD44-220ENST00000525688 M0R082 166 aa7.01□□□□□ -1.29
CD44-220ENST00000525688 TM4SF5O14894 197 aa7.01□□□□□ -1.29
CD44-220ENST00000525688 CYP11A1P05108 521 aa7.01□□□□□ -1.29
CD44-220ENST00000525688 BCRP11274 1271 aa7.01□□□□□ -1.29
CD44-220ENST00000525688 DIEXFQ68CQ4 756 aaKnown RBP7.01□□□□□ -1.29
CD44-220ENST00000525688 ZNF417Q8TAU3 575 aa7.01□□□□□ -1.29
CD44-220ENST00000525688 ZNF587Q96SQ5 575 aaPredicted RBP7.01□□□□□ -1.29
CD44-220ENST00000525688 CHMP4AQ9BY43 222 aa7.01□□□□□ -1.29
CD44-220ENST00000525688 LNPKQ9C0E8 428 aa7.01□□□□□ -1.29
CD44-220ENST00000525688 FSCN2O14926 492 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms