RNA–Protein interactions for RNA: ENST00000513984.5

VCAN-211, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-211ENST00000513984 MTMR6Q9Y217 621 aa17.68■□□□□ 0.42
VCAN-211ENST00000513984 DDX49Q9Y6V7 483 aaKnown RBP17.68■□□□□ 0.42
VCAN-211ENST00000513984 PDCP20941 246 aa17.67■□□□□ 0.42
VCAN-211ENST00000513984 KLRK1P26718 216 aa17.67■□□□□ 0.42
VCAN-211ENST00000513984 ZNF274Q96GC6 653 aaPredicted RBP17.67■□□□□ 0.42
VCAN-211ENST00000513984 EPB41L4AQ9HCS5 686 aaPredicted RBP17.67■□□□□ 0.42
VCAN-211ENST00000513984 MYH15Q9Y2K3 1946 aa17.67■□□□□ 0.42
VCAN-211ENST00000513984 PRPF40AO75400 957 aaKnown RBP17.66■□□□□ 0.42
VCAN-211ENST00000513984 APPP05067 770 aa17.66■□□□□ 0.42
VCAN-211ENST00000513984 MCM5P33992 734 aa17.66■□□□□ 0.42
VCAN-211ENST00000513984 APOBRQ0VD83 1088 aa17.66■□□□□ 0.42
VCAN-211ENST00000513984 LLPHQ9BRT6 129 aaKnown RBP17.66■□□□□ 0.42
VCAN-211ENST00000513984 ARMT1Q9H993 441 aa17.66■□□□□ 0.42
VCAN-211ENST00000513984 HIBADHP31937 336 aaKnown RBP17.65■□□□□ 0.42
VCAN-211ENST00000513984 DDR1Q08345 913 aa17.65■□□□□ 0.42
VCAN-211ENST00000513984 SCRN1Q12765 414 aa17.65■□□□□ 0.42
VCAN-211ENST00000513984 RALYLQ86SE5 291 aaKnown RBP17.65■□□□□ 0.42
VCAN-211ENST00000513984 TBC1D10CQ8IV04 446 aa17.65■□□□□ 0.42
VCAN-211ENST00000513984 IFNL3Q8IZI9 196 aa17.65■□□□□ 0.42
VCAN-211ENST00000513984 ATP6V1DQ9Y5K8 247 aa17.65■□□□□ 0.42
VCAN-211ENST00000513984 BAZ2AQ9UIF9 1905 aaKnown RBP17.65■□□□□ 0.42
VCAN-211ENST00000513984 GSG1L2A8MUP6 293 aa17.65■□□□□ 0.42
VCAN-211ENST00000513984 POLRMTO00411 1230 aaKnown RBP17.65■□□□□ 0.42
VCAN-211ENST00000513984 ANTXR2P58335 489 aa17.65■□□□□ 0.42
VCAN-211ENST00000513984 LARP1BQ659C4 914 aaKnown RBP17.65■□□□□ 0.42
VCAN-211ENST00000513984 LCORLQ8N3X6 602 aa17.65■□□□□ 0.42
VCAN-211ENST00000513984 SMARCC2Q8TAQ2 1214 aa17.65■□□□□ 0.42
VCAN-211ENST00000513984 RPGRQ92834 1020 aaKnown RBP17.65■□□□□ 0.42
VCAN-211ENST00000513984 AKT1S1Q96B36 256 aa17.65■□□□□ 0.42
VCAN-211ENST00000513984 ABCF2Q9UG63 623 aa17.65■□□□□ 0.42
VCAN-211ENST00000513984 LTBP1Q14766 1721 aa17.64■□□□□ 0.42
VCAN-211ENST00000513984 PRC1O43663 620 aa17.64■□□□□ 0.41
VCAN-211ENST00000513984 CYP7A1P22680 504 aa17.64■□□□□ 0.41
VCAN-211ENST00000513984 ZNF827Q17R98 1081 aa17.64■□□□□ 0.41
VCAN-211ENST00000513984 CHST3Q7LGC8 479 aa17.64■□□□□ 0.41
VCAN-211ENST00000513984 TMEM87AQ8NBN3 555 aa17.64■□□□□ 0.41
VCAN-211ENST00000513984 NAPBQ9H115 298 aa17.64■□□□□ 0.41
VCAN-211ENST00000513984 RAI14Q9P0K7 980 aa17.64■□□□□ 0.41
VCAN-211ENST00000513984 LEMD3Q9Y2U8 911 aa17.64■□□□□ 0.41
VCAN-211ENST00000513984 XDHP47989 1333 aa17.64■□□□□ 0.41
VCAN-211ENST00000513984 FSD2A1L4K1 749 aa17.63■□□□□ 0.41
VCAN-211ENST00000513984 DTNBO60941 627 aa17.63■□□□□ 0.41
VCAN-211ENST00000513984 RXRBP28702 533 aa17.63■□□□□ 0.41
VCAN-211ENST00000513984 TRDNQ13061 729 aa17.63■□□□□ 0.41
VCAN-211ENST00000513984 ADGRA1Q86SQ6 560 aa17.63■□□□□ 0.41
VCAN-211ENST00000513984 CHMP4CQ96CF2 233 aa17.63■□□□□ 0.41
VCAN-211ENST00000513984 LAMB1P07942 1786 aa17.63■□□□□ 0.41
VCAN-211ENST00000513984 APBA3O96018 575 aa17.63■□□□□ 0.41
VCAN-211ENST00000513984 PDIA3P30101 505 aaKnown RBP17.63■□□□□ 0.41
VCAN-211ENST00000513984 NACAP1Q9BZK3 213 aa17.63■□□□□ 0.41
VCAN-211ENST00000513984 TFCP2L1Q9NZI6 479 aa17.63■□□□□ 0.41
VCAN-211ENST00000513984 DUOX1Q9NRD9 1551 aa17.62■□□□□ 0.41
VCAN-211ENST00000513984 KLRG2A4D1S0 409 aaPredicted RBP17.62■□□□□ 0.41
VCAN-211ENST00000513984 VPS37CA5D8V6 355 aaPredicted RBP17.62■□□□□ 0.41
VCAN-211ENST00000513984 JAK2O60674 1132 aa17.62■□□□□ 0.41
VCAN-211ENST00000513984 HOXA10P31260 410 aaPredicted RBP17.62■□□□□ 0.41
VCAN-211ENST00000513984 TMED8Q6PL24 325 aaPredicted RBP17.62■□□□□ 0.41
VCAN-211ENST00000513984 C15orf52Q6ZUT6 534 aaKnown RBP17.62■□□□□ 0.41
VCAN-211ENST00000513984 TXNRD3Q86VQ6 643 aa17.62■□□□□ 0.41
VCAN-211ENST00000513984 MIGA1Q8NAN2 632 aa17.62■□□□□ 0.41
VCAN-211ENST00000513984 NSUN7Q8NE18 718 aaKnown RBP17.62■□□□□ 0.41
VCAN-211ENST00000513984 GPT2Q8TD30 523 aa17.62■□□□□ 0.41
VCAN-211ENST00000513984 RBM17Q96I25 401 aaKnown RBP17.62■□□□□ 0.41
VCAN-211ENST00000513984 ISY1Q9ULR0 285 aaKnown RBP17.62■□□□□ 0.41
VCAN-211ENST00000513984 SLC4A4Q9Y6R1 1079 aa17.62■□□□□ 0.41
VCAN-211ENST00000513984 SALL1Q9NSC2 1324 aa17.61■□□□□ 0.41
VCAN-211ENST00000513984 MAGEB6P1A0A0J9YX57 407 aa17.61■□□□□ 0.41
VCAN-211ENST00000513984 MBD3O95983 291 aa17.61■□□□□ 0.41
VCAN-211ENST00000513984 ZNF384Q8TF68 577 aa17.61■□□□□ 0.41
VCAN-211ENST00000513984 RIOK1Q9BRS2 568 aaKnown RBP17.61■□□□□ 0.41
VCAN-211ENST00000513984 ANKIB1Q9P2G1 1089 aa17.61■□□□□ 0.41
VCAN-211ENST00000513984 NEDD4P46934 1319 aa17.61■□□□□ 0.41
VCAN-211ENST00000513984 PRKAB2O43741 272 aa17.61■□□□□ 0.41
VCAN-211ENST00000513984 CTDNEP1O95476 244 aa17.61■□□□□ 0.41
VCAN-211ENST00000513984 HMGN5P82970 282 aaKnown RBP17.61■□□□□ 0.41
VCAN-211ENST00000513984 CDC37L1Q7L3B6 337 aa17.61■□□□□ 0.41
VCAN-211ENST00000513984 GPHNQ9NQX3 736 aaPredicted RBP17.61■□□□□ 0.41
VCAN-211ENST00000513984 IGSF3O75054 1194 aa17.6■□□□□ 0.41
VCAN-211ENST00000513984 NAA16Q6N069 864 aaPredicted RBP17.6■□□□□ 0.41
VCAN-211ENST00000513984 NSUN4Q96CB9 384 aaKnown RBP17.6■□□□□ 0.41
VCAN-211ENST00000513984 MYH2Q9UKX2 1941 aa17.6■□□□□ 0.41
VCAN-211ENST00000513984 COL11A2P13942 1736 aaPredicted RBP17.59■□□□□ 0.41
VCAN-211ENST00000513984 GOLGA6L3A6NEY3 463 aa17.59■□□□□ 0.41
VCAN-211ENST00000513984 TDO2P48775 406 aa17.59■□□□□ 0.41
VCAN-211ENST00000513984 FOXD4L6Q3SYB3 417 aaPredicted RBP17.59■□□□□ 0.41
VCAN-211ENST00000513984 L1TD1Q5T7N2 865 aaKnown RBP17.59■□□□□ 0.41
VCAN-211ENST00000513984 FOXD4L3Q6VB84 417 aaPredicted RBP17.59■□□□□ 0.41
VCAN-211ENST00000513984 CYB5R4Q7L1T6 521 aa17.59■□□□□ 0.41
VCAN-211ENST00000513984 SLC51AQ86UW1 340 aa17.59■□□□□ 0.41
VCAN-211ENST00000513984 COL23A1Q86Y22 540 aaPredicted RBP17.59■□□□□ 0.41
VCAN-211ENST00000513984 NLGN1Q8N2Q7 840 aa17.59■□□□□ 0.41
VCAN-211ENST00000513984 FLAD1Q8NFF5 587 aa17.59■□□□□ 0.41
VCAN-211ENST00000513984 CRAMP1Q96RY5 1269 aa17.59■□□□□ 0.41
VCAN-211ENST00000513984 CNNM2Q9H8M5 875 aa17.59■□□□□ 0.41
VCAN-211ENST00000513984 CNPY2Q9Y2B0 182 aa17.59■□□□□ 0.41
VCAN-211ENST00000513984 QSER1Q2KHR3 1735 aa17.59■□□□□ 0.41
VCAN-211ENST00000513984 ECM29Q5VYK3 1845 aa17.59■□□□□ 0.41
VCAN-211ENST00000513984 PTPDC1A2A3K4 754 aa17.58■□□□□ 0.41
VCAN-211ENST00000513984 B4E1Z4 1266 aa17.58■□□□□ 0.41
VCAN-211ENST00000513984 BBOX1O75936 387 aa17.58■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms