RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CAPS2Q9BXY5 557 aa12.56□□□□□ -0.4
LIMCH1-217ENST00000512946 PEX19P40855 299 aa12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 INPP1P49441 399 aa12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 DIXDC1Q155Q3 683 aa12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 KLHDC4Q8TBB5 520 aa12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 DDX21Q9NR30 783 aaKnown RBP eCLIP12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 TPX2Q9ULW0 747 aaKnown RBP12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 CALM1P0DP23 149 aa12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 CALM2P0DP24 149 aa12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 CALM3P0DP25 149 aa12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 EEF2P13639 858 aaKnown RBP12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 ITIH3Q06033 890 aa12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 FAM160A1Q05DH4 1040 aa12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 SECISBP2LQ93073 1101 aaKnown RBP12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 BOLA2Q9H3K6 86 aa12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 CABP4P57796 275 aa12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 ASIC1P78348 528 aa12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 CCT2P78371 535 aaKnown RBP12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 ARHGAP4P98171 946 aa12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 CCDC93Q567U6 631 aa12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 MCTP2Q6DN12 878 aa12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 KIFAP3Q92845 792 aa12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 DTNBP1Q96EV8 351 aa12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 FAM204AQ9H8W3 233 aa12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 RRAGDQ9NQL2 400 aaPredicted RBP12.55□□□□□ -0.4
LIMCH1-217ENST00000512946 CRCPO75575 148 aa12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 GNGT1P63211 74 aa12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 PHEXP78562 749 aa12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 ZNF530Q6P9A1 599 aaPredicted RBP12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 LEO1Q8WVC0 666 aaPredicted RBP12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 ALG1Q9BT22 464 aa12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 PSMD7P51665 324 aa12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 NUCB1Q02818 461 aa12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 ZSCAN29Q8IWY8 852 aaPredicted RBP12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 MLKLQ8NB16 471 aa12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 BCAS4Q8TDM0 211 aa12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 MINDY4BA8MYZ0 360 aa12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 RANBP6O60518 1105 aaKnown RBP12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 SLC5A1P13866 664 aa12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 STX2P32856 288 aa12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 KRT71Q3SY84 523 aa12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 DENND2CQ68D51 928 aa12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 HAUS1Q96CS2 278 aa12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 MPHOSPH6Q99547 160 aaKnown RBP12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 ZBTB43O43298 467 aa12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 LMNB2Q03252 620 aa12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 PPP2R5AQ15172 486 aa12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 HELBQ8NG08 1087 aaPredicted RBP12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 SSH1Q8WYL5 1049 aa12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 USP6NLQ92738 828 aa12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 BCL2L12Q9HB09 334 aa12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 PFDN4Q9NQP4 134 aa12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 RRP15Q9Y3B9 282 aaKnown RBP12.54□□□□□ -0.4
LIMCH1-217ENST00000512946 ERBINQ96RT1 1412 aa12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 SLC9C1Q4G0N8 1177 aa12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 CCDC152Q4G0S7 254 aa12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 MFSD6Q6ZSS7 791 aa12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 SDCCAG3Q96C92 435 aa12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 SUN1O94901 812 aa12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 ZNF75DP51815 510 aa12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 SND1Q7KZF4 910 aaKnown RBP eCLIP12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 ARHGAP18Q8N392 663 aa12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 ZC3H15Q8WU90 426 aaKnown RBP12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 SAAL1Q96ER3 474 aa12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 KAT14Q9H8E8 782 aa12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 RGS16O15492 202 aaPredicted RBP12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 NRBF2Q96F24 287 aa12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 SLC26A6Q9BXS9 759 aa12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 CABP2Q9NPB3 220 aa12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 SH3BP5O60239 455 aa12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 STK10O94804 968 aaKnown RBP12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 KRT3P12035 628 aa12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 IGSF22Q8N9C0 903 aa12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 EXOC4Q96A65 974 aa12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 CTTNBP2NLQ9P2B4 639 aa12.53□□□□□ -0.4
LIMCH1-217ENST00000512946 ZFXP17010 805 aaPredicted RBP12.52□□□□□ -0.4
LIMCH1-217ENST00000512946 CENPKQ9BS16 269 aa12.52□□□□□ -0.4
LIMCH1-217ENST00000512946 PDS5BQ9NTI5 1447 aa12.52□□□□□ -0.4
LIMCH1-217ENST00000512946 NBPF9Q3BBW0 867 aa12.52□□□□□ -0.4
LIMCH1-217ENST00000512946 CCDC124Q96CT7 223 aaKnown RBP12.52□□□□□ -0.4
LIMCH1-217ENST00000512946 MAK16Q9BXY0 300 aaKnown RBP12.52□□□□□ -0.4
LIMCH1-217ENST00000512946 KRT79Q5XKE5 535 aa12.52□□□□□ -0.41
LIMCH1-217ENST00000512946 ICE2Q659A1 982 aa12.52□□□□□ -0.41
LIMCH1-217ENST00000512946 CCDC169A6NNP5 214 aa12.52□□□□□ -0.41
LIMCH1-217ENST00000512946 DNM1Q05193 864 aaKnown RBP12.52□□□□□ -0.41
LIMCH1-217ENST00000512946 PSMD6Q15008 389 aa12.52□□□□□ -0.41
LIMCH1-217ENST00000512946 SEPT2Q15019 361 aa12.52□□□□□ -0.41
LIMCH1-217ENST00000512946 RBM26Q5T8P6 1007 aaKnown RBP12.52□□□□□ -0.41
LIMCH1-217ENST00000512946 CRACR2BQ8N4Y2 399 aaPredicted RBP12.52□□□□□ -0.41
LIMCH1-217ENST00000512946 FAM13AO94988 1023 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 AFMP43652 599 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 NBPF6Q5VWK0 638 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 PPP4R1Q8TF05 950 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 NBPF4Q96M43 638 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 DAPK1P53355 1430 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 UQCRFS1P1P0C7P4 283 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 ISM2Q6H9L7 571 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 EFHD1Q9BUP0 239 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 STK24Q9Y6E0 443 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms