RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 PRAMEF22A3QJZ6 481 aa11.46□□□□□ -0.57
USP53-207ENST00000510852 TRIM64CA6NLI5 447 aa11.46□□□□□ -0.57
USP53-207ENST00000510852 TBX3O15119 743 aa11.46□□□□□ -0.57
USP53-207ENST00000510852 PTCD1O75127 700 aaKnown RBP11.46□□□□□ -0.57
USP53-207ENST00000510852 SLC20A2Q08357 652 aa11.46□□□□□ -0.57
USP53-207ENST00000510852 TOMM20Q15388 145 aa11.46□□□□□ -0.57
USP53-207ENST00000510852 PDXDC1Q6P996 788 aa11.46□□□□□ -0.57
USP53-207ENST00000510852 USP48Q86UV5 1035 aa11.46□□□□□ -0.57
USP53-207ENST00000510852 CD248Q9HCU0 757 aa11.46□□□□□ -0.57
USP53-207ENST00000510852 ODF2LQ9ULJ1 636 aa11.46□□□□□ -0.57
USP53-207ENST00000510852 ITGB4P16144 1822 aa11.46□□□□□ -0.57
USP53-207ENST00000510852 CCT2P78371 535 aaKnown RBP11.46□□□□□ -0.58
USP53-207ENST00000510852 B4GALNT3Q6L9W6 998 aa11.46□□□□□ -0.58
USP53-207ENST00000510852 ARMC5Q96C12 935 aa11.46□□□□□ -0.58
USP53-207ENST00000510852 BIN2Q9UBW5 565 aaPredicted RBP11.46□□□□□ -0.58
USP53-207ENST00000510852 IP6K2Q9UHH9 426 aa11.46□□□□□ -0.58
USP53-207ENST00000510852 PAPPAQ13219 1627 aa11.45□□□□□ -0.58
USP53-207ENST00000510852 PLIN1O60240 522 aa11.45□□□□□ -0.58
USP53-207ENST00000510852 SNRPA1P09661 255 aaKnown RBP11.45□□□□□ -0.58
USP53-207ENST00000510852 EIF2S2P20042 333 aaKnown RBP11.45□□□□□ -0.58
USP53-207ENST00000510852 FECHP22830 423 aa11.45□□□□□ -0.58
USP53-207ENST00000510852 ZBED6P86452 979 aa11.45□□□□□ -0.58
USP53-207ENST00000510852 DNTTIP2Q5QJE6 756 aaKnown RBP11.45□□□□□ -0.58
USP53-207ENST00000510852 FAM196AQ6ZSG2 479 aa11.45□□□□□ -0.58
USP53-207ENST00000510852 ANKRD13DQ6ZTN6 518 aa11.45□□□□□ -0.58
USP53-207ENST00000510852 PTF1AQ7RTS3 328 aa11.45□□□□□ -0.58
USP53-207ENST00000510852 SLF2Q8IX21 1173 aa11.45□□□□□ -0.58
USP53-207ENST00000510852 MRPL50Q8N5N7 158 aaKnown RBP11.45□□□□□ -0.58
USP53-207ENST00000510852 KCPQ6ZWJ8 1503 aa11.45□□□□□ -0.58
USP53-207ENST00000510852 PPFIA3O75145 1194 aa11.45□□□□□ -0.58
USP53-207ENST00000510852 RAPGEF1Q13905 1077 aa11.45□□□□□ -0.58
USP53-207ENST00000510852 CCDC30Q5VVM6 783 aa11.45□□□□□ -0.58
USP53-207ENST00000510852 PPCSQ9HAB8 311 aa11.45□□□□□ -0.58
USP53-207ENST00000510852 CLIC5Q9NZA1 410 aa11.45□□□□□ -0.58
USP53-207ENST00000510852 TMEM63CQ9P1W3 806 aa11.45□□□□□ -0.58
USP53-207ENST00000510852 EP400Q96L91 3159 aa11.44□□□□□ -0.58
USP53-207ENST00000510852 MSL1Q68DK7 614 aa11.44□□□□□ -0.58
USP53-207ENST00000510852 EP400NLQ6ZTU2 488 aa11.44□□□□□ -0.58
USP53-207ENST00000510852 SLC43A3Q8NBI5 491 aa11.44□□□□□ -0.58
USP53-207ENST00000510852 RBM42Q9BTD8 480 aaKnown RBP11.44□□□□□ -0.58
USP53-207ENST00000510852 POLG2Q9UHN1 485 aa11.44□□□□□ -0.58
USP53-207ENST00000510852 BRWD3Q6RI45 1802 aa11.44□□□□□ -0.58
USP53-207ENST00000510852 PPP1R37O75864 691 aa11.44□□□□□ -0.58
USP53-207ENST00000510852 RFC5P40937 340 aa11.44□□□□□ -0.58
USP53-207ENST00000510852 C16orf87Q6PH81 154 aa11.44□□□□□ -0.58
USP53-207ENST00000510852 UBE2Q1Q7Z7E8 422 aa11.44□□□□□ -0.58
USP53-207ENST00000510852 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.44□□□□□ -0.58
USP53-207ENST00000510852 PRPF38AQ8NAV1 312 aaKnown RBP11.44□□□□□ -0.58
USP53-207ENST00000510852 GOLGA1Q92805 767 aa11.44□□□□□ -0.58
USP53-207ENST00000510852 FRAT1Q92837 279 aaPredicted RBP11.44□□□□□ -0.58
USP53-207ENST00000510852 ACBD3Q9H3P7 528 aa11.44□□□□□ -0.58
USP53-207ENST00000510852 BPNT1O95861 308 aa11.43□□□□□ -0.58
USP53-207ENST00000510852 SRGNP10124 158 aa11.43□□□□□ -0.58
USP53-207ENST00000510852 MRPL58Q14197 206 aaKnown RBP11.43□□□□□ -0.58
USP53-207ENST00000510852 NDUFAF2Q8N183 169 aa11.43□□□□□ -0.58
USP53-207ENST00000510852 CCDC94Q9BW85 323 aaPredicted RBP11.43□□□□□ -0.58
USP53-207ENST00000510852 STK31Q9BXU1 1019 aa11.43□□□□□ -0.58
USP53-207ENST00000510852 ACAD8Q9UKU7 415 aa11.43□□□□□ -0.58
USP53-207ENST00000510852 TMCC3Q9ULS5 477 aa11.43□□□□□ -0.58
USP53-207ENST00000510852 NOB1Q9ULX3 412 aaKnown RBP11.43□□□□□ -0.58
USP53-207ENST00000510852 USP16Q9Y5T5 823 aa11.43□□□□□ -0.58
USP53-207ENST00000510852 SMARCC1Q92922 1105 aaPredicted RBP11.43□□□□□ -0.58
USP53-207ENST00000510852 SUDS3Q9H7L9 328 aaPredicted RBP11.43□□□□□ -0.58
USP53-207ENST00000510852 UBR2Q8IWV8 1755 aa11.42□□□□□ -0.58
USP53-207ENST00000510852 PABPN1LA6NDY0 278 aaKnown RBP11.42□□□□□ -0.58
USP53-207ENST00000510852 MPHOSPH10O00566 681 aaKnown RBP11.42□□□□□ -0.58
USP53-207ENST00000510852 PAX7P23759 505 aa11.42□□□□□ -0.58
USP53-207ENST00000510852 TRAPPC10P48553 1259 aa11.42□□□□□ -0.58
USP53-207ENST00000510852 COL19A1Q14993 1142 aa11.42□□□□□ -0.58
USP53-207ENST00000510852 SAMD3Q8N6K7 520 aa11.42□□□□□ -0.58
USP53-207ENST00000510852 SLC4A9Q96Q91 983 aa11.42□□□□□ -0.58
USP53-207ENST00000510852 KIF16BQ96L93 1317 aa11.42□□□□□ -0.58
USP53-207ENST00000510852 PALLDQ8WX93 1383 aa11.42□□□□□ -0.58
USP53-207ENST00000510852 SEPT2Q15019 361 aa11.41□□□□□ -0.58
USP53-207ENST00000510852 BRD3Q15059 726 aa11.41□□□□□ -0.58
USP53-207ENST00000510852 ENAMQ9NRM1 1142 aa11.41□□□□□ -0.58
USP53-207ENST00000510852 NHSQ6T4R5 1651 aa11.41□□□□□ -0.58
USP53-207ENST00000510852 SCNN1AP37088 669 aa11.41□□□□□ -0.58
USP53-207ENST00000510852 PPP4R3BQ5MIZ7 849 aa11.41□□□□□ -0.58
USP53-207ENST00000510852 FERMT3Q86UX7 667 aa11.41□□□□□ -0.58
USP53-207ENST00000510852 NBPF3Q9H094 633 aa11.41□□□□□ -0.58
USP53-207ENST00000510852 LOC102724428A0A0B4J2F2 783 aa11.4□□□□□ -0.58
USP53-207ENST00000510852 TRIM37O94972 964 aa11.4□□□□□ -0.58
USP53-207ENST00000510852 SIK1P57059 783 aa11.4□□□□□ -0.58
USP53-207ENST00000510852 C20orf194Q5TEA3 1177 aa11.4□□□□□ -0.58
USP53-207ENST00000510852 TMEM164Q5U3C3 297 aa11.4□□□□□ -0.58
USP53-207ENST00000510852 G2E3Q7L622 706 aa11.4□□□□□ -0.58
USP53-207ENST00000510852 TAS1R3Q7RTX0 852 aa11.4□□□□□ -0.58
USP53-207ENST00000510852 CATIPQ7Z7H3 387 aa11.4□□□□□ -0.58
USP53-207ENST00000510852 DNAJC10Q8IXB1 793 aa11.4□□□□□ -0.58
USP53-207ENST00000510852 CCDC34Q96HJ3 373 aa11.4□□□□□ -0.58
USP53-207ENST00000510852 TEX13AQ9BXU3 409 aaPredicted RBP11.4□□□□□ -0.58
USP53-207ENST00000510852 ARNT2Q9HBZ2 717 aa11.4□□□□□ -0.58
USP53-207ENST00000510852 DBF4Q9UBU7 674 aaPredicted RBP11.4□□□□□ -0.58
USP53-207ENST00000510852 C5P01031 1676 aa11.4□□□□□ -0.58
USP53-207ENST00000510852 SLC26A4O43511 780 aa11.4□□□□□ -0.58
USP53-207ENST00000510852 ANXA1P04083 346 aa11.4□□□□□ -0.58
USP53-207ENST00000510852 PROSER3Q2NL68 480 aa11.4□□□□□ -0.58
USP53-207ENST00000510852 INO80DQ53TQ3 878 aaPredicted RBP11.4□□□□□ -0.58
USP53-207ENST00000510852 STK32AQ8WU08 396 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms