RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 LRRC24Q50LG9 513 aa10.73□□□□□ -0.69
PDGFRA-208ENST00000509490 CCDC93Q567U6 631 aa10.73□□□□□ -0.69
PDGFRA-208ENST00000509490 CCDC158Q5M9N0 1113 aa10.73□□□□□ -0.69
PDGFRA-208ENST00000509490 FCHSD1Q86WN1 690 aa10.73□□□□□ -0.69
PDGFRA-208ENST00000509490 NCOA7Q8NI08 942 aa10.73□□□□□ -0.69
PDGFRA-208ENST00000509490 RBM33Q96EV2 1170 aaKnown RBP10.73□□□□□ -0.69
PDGFRA-208ENST00000509490 C16orf45Q96MC5 204 aaPredicted RBP10.73□□□□□ -0.69
PDGFRA-208ENST00000509490 NOL10Q9BSC4 688 aaKnown RBP10.73□□□□□ -0.69
PDGFRA-208ENST00000509490 MTA3Q9BTC8 594 aa10.73□□□□□ -0.69
PDGFRA-208ENST00000509490 LRRC2Q9BYS8 371 aa10.73□□□□□ -0.69
PDGFRA-208ENST00000509490 CEP126Q9P2H0 1117 aa10.73□□□□□ -0.69
PDGFRA-208ENST00000509490 XIRP1Q702N8 1843 aaKnown RBP10.73□□□□□ -0.69
PDGFRA-208ENST00000509490 NDUFA8P51970 172 aa10.73□□□□□ -0.69
PDGFRA-208ENST00000509490 TIMM10P62072 90 aa10.73□□□□□ -0.69
PDGFRA-208ENST00000509490 TCIRG1Q13488 830 aa10.73□□□□□ -0.69
PDGFRA-208ENST00000509490 SAMD1Q6SPF0 538 aaPredicted RBP10.73□□□□□ -0.69
PDGFRA-208ENST00000509490 TTLL7Q6ZT98 887 aa10.73□□□□□ -0.69
PDGFRA-208ENST00000509490 ZNF397Q8NF99 534 aaPredicted RBP10.73□□□□□ -0.69
PDGFRA-208ENST00000509490 C8orf76Q96K31 380 aa10.73□□□□□ -0.69
PDGFRA-208ENST00000509490 FTOQ9C0B1 505 aaKnown RBP eCLIP10.73□□□□□ -0.69
PDGFRA-208ENST00000509490 TMX1Q9H3N1 280 aa10.73□□□□□ -0.69
PDGFRA-208ENST00000509490 CICQ96RK0 1608 aaPredicted RBP10.73□□□□□ -0.69
PDGFRA-208ENST00000509490 CCP110O43303 1012 aa10.72□□□□□ -0.69
PDGFRA-208ENST00000509490 ANO1Q5XXA6 986 aa10.72□□□□□ -0.69
PDGFRA-208ENST00000509490 NCOA5Q9HCD5 579 aaKnown RBP10.72□□□□□ -0.69
PDGFRA-208ENST00000509490 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.72□□□□□ -0.69
PDGFRA-208ENST00000509490 NHSL1Q5SYE7 1610 aa10.72□□□□□ -0.69
PDGFRA-208ENST00000509490 PRC1O43663 620 aa10.72□□□□□ -0.69
PDGFRA-208ENST00000509490 FGAP02671 866 aa10.72□□□□□ -0.69
PDGFRA-208ENST00000509490 UBE3CQ15386 1083 aa10.72□□□□□ -0.69
PDGFRA-208ENST00000509490 SGMS1Q86VZ5 419 aa10.72□□□□□ -0.69
PDGFRA-208ENST00000509490 AOPEPQ8N6M6 819 aa10.72□□□□□ -0.69
PDGFRA-208ENST00000509490 CDKL5O76039 1030 aa10.71□□□□□ -0.69
PDGFRA-208ENST00000509490 U2AF2P26368 475 aaKnown RBP eCLIP10.71□□□□□ -0.69
PDGFRA-208ENST00000509490 RCAN1P53805 252 aa10.71□□□□□ -0.69
PDGFRA-208ENST00000509490 TPM4P67936 248 aa10.71□□□□□ -0.69
PDGFRA-208ENST00000509490 CCT2P78371 535 aaKnown RBP10.71□□□□□ -0.69
PDGFRA-208ENST00000509490 PTPAQ15257 358 aa10.71□□□□□ -0.69
PDGFRA-208ENST00000509490 KIF18AQ8NI77 898 aa10.71□□□□□ -0.69
PDGFRA-208ENST00000509490 XAGE2Q96GT9 111 aa10.71□□□□□ -0.69
PDGFRA-208ENST00000509490 NEUROD6Q96NK8 337 aa10.71□□□□□ -0.69
PDGFRA-208ENST00000509490 TEX13AQ9BXU3 409 aaPredicted RBP10.71□□□□□ -0.69
PDGFRA-208ENST00000509490 A0A0G2JLW4 131 aa10.71□□□□□ -0.69
PDGFRA-208ENST00000509490 STK38Q15208 465 aa10.71□□□□□ -0.69
PDGFRA-208ENST00000509490 BCORQ6W2J9 1755 aa10.71□□□□□ -0.69
PDGFRA-208ENST00000509490 TMEM87BQ96K49 555 aa10.71□□□□□ -0.69
PDGFRA-208ENST00000509490 HSD3B7Q9H2F3 369 aa10.71□□□□□ -0.69
PDGFRA-208ENST00000509490 CLIC4Q9Y696 253 aa10.71□□□□□ -0.69
PDGFRA-208ENST00000509490 PHLPP2Q6ZVD8 1323 aa10.71□□□□□ -0.7
PDGFRA-208ENST00000509490 ZNF202O95125 648 aa10.71□□□□□ -0.7
PDGFRA-208ENST00000509490 SLC3A2P08195 630 aaKnown RBP10.71□□□□□ -0.7
PDGFRA-208ENST00000509490 ADD2P35612 726 aa10.71□□□□□ -0.7
PDGFRA-208ENST00000509490 TTF1Q15361 905 aaPredicted RBP10.71□□□□□ -0.7
PDGFRA-208ENST00000509490 E4F1Q66K89 784 aaPredicted RBP10.71□□□□□ -0.7
PDGFRA-208ENST00000509490 JMYQ8N9B5 988 aa10.71□□□□□ -0.7
PDGFRA-208ENST00000509490 ZCRB1Q8TBF4 217 aaKnown RBP10.71□□□□□ -0.7
PDGFRA-208ENST00000509490 MAP3K14Q99558 947 aa10.71□□□□□ -0.7
PDGFRA-208ENST00000509490 NBPF3Q9H094 633 aa10.71□□□□□ -0.7
PDGFRA-208ENST00000509490 ORC3Q9UBD5 711 aaPredicted RBP10.71□□□□□ -0.7
PDGFRA-208ENST00000509490 RIPOR2Q9Y4F9 1068 aa10.71□□□□□ -0.7
PDGFRA-208ENST00000509490 CHD4Q14839 1912 aa10.7□□□□□ -0.7
PDGFRA-208ENST00000509490 USP27XA6NNY8 438 aa10.7□□□□□ -0.7
PDGFRA-208ENST00000509490 SH2B2O14492 632 aaPredicted RBP10.7□□□□□ -0.7
PDGFRA-208ENST00000509490 SLU7O95391 586 aaKnown RBP10.7□□□□□ -0.7
PDGFRA-208ENST00000509490 DPCR1Q3MIW9 517 aa10.7□□□□□ -0.7
PDGFRA-208ENST00000509490 CT47A1Q5JQC4 288 aaPredicted RBP10.7□□□□□ -0.7
PDGFRA-208ENST00000509490 CADPS2Q86UW7 1296 aa10.7□□□□□ -0.7
PDGFRA-208ENST00000509490 VGLL2Q8N8G2 317 aa10.7□□□□□ -0.7
PDGFRA-208ENST00000509490 ZBTB38Q8NAP3 1195 aaPredicted RBP10.7□□□□□ -0.7
PDGFRA-208ENST00000509490 KLF18A0A0U1RQI7 1052 aa10.7□□□□□ -0.7
PDGFRA-208ENST00000509490 ATF3P18847 181 aa10.7□□□□□ -0.7
PDGFRA-208ENST00000509490 TTC39AQ5SRH9 613 aa10.7□□□□□ -0.7
PDGFRA-208ENST00000509490 RESP18Q5W5W9 173 aa10.7□□□□□ -0.7
PDGFRA-208ENST00000509490 TTLL5Q6EMB2 1281 aa10.7□□□□□ -0.7
PDGFRA-208ENST00000509490 ARMCX5Q6P1M9 558 aa10.7□□□□□ -0.7
PDGFRA-208ENST00000509490 CARD10Q9BWT7 1032 aa10.7□□□□□ -0.7
PDGFRA-208ENST00000509490 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.7□□□□□ -0.7
PDGFRA-208ENST00000509490 ANGEL1Q9UNK9 670 aaKnown RBP10.7□□□□□ -0.7
PDGFRA-208ENST00000509490 PLCH1Q4KWH8 1693 aa10.7□□□□□ -0.7
PDGFRA-208ENST00000509490 RREB1Q92766 1687 aa10.7□□□□□ -0.7
PDGFRA-208ENST00000509490 GOLGA8BA8MQT2 603 aa10.69□□□□□ -0.7
PDGFRA-208ENST00000509490 KIF28PB7ZC32 967 aa10.69□□□□□ -0.7
PDGFRA-208ENST00000509490 CBFA2T2O43439 604 aa10.69□□□□□ -0.7
PDGFRA-208ENST00000509490 H2AFXP16104 143 aaPredicted RBP10.69□□□□□ -0.7
PDGFRA-208ENST00000509490 PFKFB1P16118 471 aa10.69□□□□□ -0.7
PDGFRA-208ENST00000509490 ARID4AP29374 1257 aaPredicted RBP10.69□□□□□ -0.7
PDGFRA-208ENST00000509490 LIFRP42702 1097 aa10.69□□□□□ -0.7
PDGFRA-208ENST00000509490 ARID5BQ14865 1188 aa10.69□□□□□ -0.7
PDGFRA-208ENST00000509490 CCDC57Q2TAC2 916 aa10.69□□□□□ -0.7
PDGFRA-208ENST00000509490 NT5DC1Q5TFE4 455 aa10.69□□□□□ -0.7
PDGFRA-208ENST00000509490 SDF4Q9BRK5 362 aa10.69□□□□□ -0.7
PDGFRA-208ENST00000509490 PUS3Q9BZE2 481 aaKnown RBP10.69□□□□□ -0.7
PDGFRA-208ENST00000509490 LAMB2P55268 1798 aa10.69□□□□□ -0.7
PDGFRA-208ENST00000509490 CUTAO60888 179 aa10.69□□□□□ -0.7
PDGFRA-208ENST00000509490 NTRK3Q16288 839 aa10.69□□□□□ -0.7
PDGFRA-208ENST00000509490 LMOD2Q6P5Q4 547 aa10.69□□□□□ -0.7
PDGFRA-208ENST00000509490 PPP1R13BQ96KQ4 1090 aa10.69□□□□□ -0.7
PDGFRA-208ENST00000509490 AK7Q96M32 723 aa10.69□□□□□ -0.7
PDGFRA-208ENST00000509490 XPO4Q9C0E2 1151 aaKnown RBP10.69□□□□□ -0.7
PDGFRA-208ENST00000509490 A0A1B0GVL5 298 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms