RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ZAR1Q86SH2 424 aa6.2□□□□□ -1.42
NUP54-208ENST00000508604 C2CD4AQ8NCU7 369 aaPredicted RBP6.2□□□□□ -1.42
NUP54-208ENST00000508604 RAD18Q9NS91 495 aa6.2□□□□□ -1.42
NUP54-208ENST00000508604 PRKAG2Q9UGJ0 569 aa6.2□□□□□ -1.42
NUP54-208ENST00000508604 FLCNQ8NFG4 579 aa6.19□□□□□ -1.42
NUP54-208ENST00000508604 EZH1Q92800 747 aaPredicted RBP6.19□□□□□ -1.42
NUP54-208ENST00000508604 FOXD3Q9UJU5 478 aaPredicted RBP6.19□□□□□ -1.42
NUP54-208ENST00000508604 ADH5P11766 374 aa6.18□□□□□ -1.42
NUP54-208ENST00000508604 JUNBP17275 347 aaPredicted RBP6.18□□□□□ -1.42
NUP54-208ENST00000508604 DLGAP3O95886 979 aa6.17□□□□□ -1.42
NUP54-208ENST00000508604 RAB6AP20340 208 aa6.17□□□□□ -1.42
NUP54-208ENST00000508604 PCDH1Q08174 1060 aa6.17□□□□□ -1.42
NUP54-208ENST00000508604 SF3B2Q13435 895 aaKnown RBP6.17□□□□□ -1.42
NUP54-208ENST00000508604 DYMQ7RTS9 669 aa6.17□□□□□ -1.42
NUP54-208ENST00000508604 CLEC4MQ9H2X3 399 aaPredicted RBP6.17□□□□□ -1.42
NUP54-208ENST00000508604 LRRC4CQ9HCJ2 640 aa6.17□□□□□ -1.42
NUP54-208ENST00000508604 A0A096LPE4 126 aa6.17□□□□□ -1.42
NUP54-208ENST00000508604 A0A1W2PPZ6 126 aa6.17□□□□□ -1.42
NUP54-208ENST00000508604 MTMR3Q13615 1198 aa6.17□□□□□ -1.42
NUP54-208ENST00000508604 POU4F3Q15319 338 aa6.17□□□□□ -1.42
NUP54-208ENST00000508604 CORO1BQ9BR76 489 aa6.17□□□□□ -1.42
NUP54-208ENST00000508604 ZFYVE28Q9HCC9 887 aa6.17□□□□□ -1.42
NUP54-208ENST00000508604 LATS2Q9NRM7 1088 aa6.17□□□□□ -1.42
NUP54-208ENST00000508604 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.16□□□□□ -1.42
NUP54-208ENST00000508604 FAM170BA6NMN3 283 aa6.16□□□□□ -1.42
NUP54-208ENST00000508604 NEFLP07196 543 aa6.16□□□□□ -1.42
NUP54-208ENST00000508604 NFICP08651 508 aa6.16□□□□□ -1.42
NUP54-208ENST00000508604 NPR3P17342 541 aa6.16□□□□□ -1.42
NUP54-208ENST00000508604 MAOBP27338 520 aa6.16□□□□□ -1.42
NUP54-208ENST00000508604 SSFA2P28290 1259 aa6.16□□□□□ -1.42
NUP54-208ENST00000508604 ADMP35318 185 aa6.16□□□□□ -1.42
NUP54-208ENST00000508604 AKAP4Q5JQC9 854 aa6.16□□□□□ -1.42
NUP54-208ENST00000508604 PEAR1Q5VY43 1037 aaPredicted RBP6.16□□□□□ -1.42
NUP54-208ENST00000508604 OGFOD2Q6N063 350 aa6.16□□□□□ -1.42
NUP54-208ENST00000508604 AP4E1Q9UPM8 1137 aa6.16□□□□□ -1.42
NUP54-208ENST00000508604 ACTL7BQ9Y614 415 aa6.16□□□□□ -1.42
NUP54-208ENST00000508604 METTL12A8MUP2 240 aa6.15□□□□□ -1.42
NUP54-208ENST00000508604 FKBP4Q02790 459 aaKnown RBP eCLIP6.15□□□□□ -1.42
NUP54-208ENST00000508604 CBLL1Q75N03 491 aa6.15□□□□□ -1.42
NUP54-208ENST00000508604 SHISA5Q8N114 240 aa6.15□□□□□ -1.42
NUP54-208ENST00000508604 LIN7BQ9HAP6 207 aa6.15□□□□□ -1.42
NUP54-208ENST00000508604 ABL1P00519 1130 aa6.14□□□□□ -1.43
NUP54-208ENST00000508604 ASPAP45381 313 aa6.14□□□□□ -1.43
NUP54-208ENST00000508604 SLC5A6Q9Y289 635 aa6.14□□□□□ -1.43
NUP54-208ENST00000508604 BIN1O00499 593 aa6.14□□□□□ -1.43
NUP54-208ENST00000508604 POLR3DP05423 398 aaPredicted RBP6.14□□□□□ -1.43
NUP54-208ENST00000508604 HNRNPUQ00839 825 aaKnown RBP eCLIP6.14□□□□□ -1.43
NUP54-208ENST00000508604 CCNJLQ8IV13 435 aa6.14□□□□□ -1.43
NUP54-208ENST00000508604 STK11IPQ8N1F8 1099 aa6.14□□□□□ -1.43
NUP54-208ENST00000508604 SEMA6CQ9H3T2 930 aa6.14□□□□□ -1.43
NUP54-208ENST00000508604 ZC3H7BQ9UGR2 993 aaKnown RBP6.14□□□□□ -1.43
NUP54-208ENST00000508604 FZD6O60353 706 aa6.13□□□□□ -1.43
NUP54-208ENST00000508604 ZNF765Q7L2R6 523 aa6.13□□□□□ -1.43
NUP54-208ENST00000508604 GJD3Q8N144 294 aa6.13□□□□□ -1.43
NUP54-208ENST00000508604 POU5F2Q8N7G0 328 aa6.13□□□□□ -1.43
NUP54-208ENST00000508604 NRSN2Q9GZP1 204 aa6.13□□□□□ -1.43
NUP54-208ENST00000508604 PPP1R15AO75807 674 aaPredicted RBP6.12□□□□□ -1.43
NUP54-208ENST00000508604 ITGB5P18084 799 aa6.12□□□□□ -1.43
NUP54-208ENST00000508604 PDE3AQ14432 1141 aa6.12□□□□□ -1.43
NUP54-208ENST00000508604 ZNF423Q2M1K9 1284 aa6.12□□□□□ -1.43
NUP54-208ENST00000508604 CYP27C1Q4G0S4 372 aa6.12□□□□□ -1.43
NUP54-208ENST00000508604 GALNT12Q8IXK2 581 aa6.12□□□□□ -1.43
NUP54-208ENST00000508604 GATA6Q92908 595 aa6.12□□□□□ -1.43
NUP54-208ENST00000508604 ACSS3Q9H6R3 686 aa6.12□□□□□ -1.43
NUP54-208ENST00000508604 PAK6Q9NQU5 681 aaPredicted RBP6.12□□□□□ -1.43
NUP54-208ENST00000508604 DAGLAQ9Y4D2 1042 aa6.12□□□□□ -1.43
NUP54-208ENST00000508604 A0A1W2PP55 124 aa6.11□□□□□ -1.43
NUP54-208ENST00000508604 PLCL1Q15111 1095 aa6.11□□□□□ -1.43
NUP54-208ENST00000508604 FAM105AQ9NUU6 356 aa6.11□□□□□ -1.43
NUP54-208ENST00000508604 CCDC87Q9NVE4 849 aa6.11□□□□□ -1.43
NUP54-208ENST00000508604 TMEM88BA6NKF7 163 aa6.1□□□□□ -1.43
NUP54-208ENST00000508604 C8AP07357 584 aa6.1□□□□□ -1.43
NUP54-208ENST00000508604 GRIA4P48058 902 aa6.1□□□□□ -1.43
NUP54-208ENST00000508604 SPRED3Q2MJR0 410 aa6.1□□□□□ -1.43
NUP54-208ENST00000508604 OGFOD3Q6PK18 319 aa6.1□□□□□ -1.43
NUP54-208ENST00000508604 MISP3Q96FF7 219 aa6.1□□□□□ -1.43
NUP54-208ENST00000508604 AP3B2Q13367 1082 aa6.1□□□□□ -1.43
NUP54-208ENST00000508604 NFXL1Q6ZNB6 911 aa6.1□□□□□ -1.43
NUP54-208ENST00000508604 TCF12Q99081 682 aa6.1□□□□□ -1.43
NUP54-208ENST00000508604 EHD4Q9H223 541 aa6.1□□□□□ -1.43
NUP54-208ENST00000508604 BRPF3Q9ULD4 1205 aa6.1□□□□□ -1.43
NUP54-208ENST00000508604 AOC2O75106 756 aa6.09□□□□□ -1.43
NUP54-208ENST00000508604 B3GALT4O96024 378 aa6.09□□□□□ -1.43
NUP54-208ENST00000508604 JAG1P78504 1218 aa6.09□□□□□ -1.43
NUP54-208ENST00000508604 PIDD1Q9HB75 910 aa6.09□□□□□ -1.43
NUP54-208ENST00000508604 ANO2Q9NQ90 1003 aa6.09□□□□□ -1.43
NUP54-208ENST00000508604 CTSBP07858 339 aa6.08□□□□□ -1.44
NUP54-208ENST00000508604 SLFN14P0C7P3 912 aa6.08□□□□□ -1.44
NUP54-208ENST00000508604 ZNF211Q13398 564 aaPredicted RBP6.08□□□□□ -1.44
NUP54-208ENST00000508604 KIAA0319Q5VV43 1072 aa6.08□□□□□ -1.44
NUP54-208ENST00000508604 BCL7CQ8WUZ0 217 aaPredicted RBP6.08□□□□□ -1.44
NUP54-208ENST00000508604 GSX1Q9H4S2 264 aaPredicted RBP6.08□□□□□ -1.44
NUP54-208ENST00000508604 LGR6Q9HBX8 967 aa6.08□□□□□ -1.44
NUP54-208ENST00000508604 SYNGAP1Q96PV0 1343 aa6.08□□□□□ -1.44
NUP54-208ENST00000508604 ARID1BQ8NFD5 2236 aaPredicted RBP6.08□□□□□ -1.44
NUP54-208ENST00000508604 PDE3BQ13370 1112 aa6.07□□□□□ -1.44
NUP54-208ENST00000508604 B4GALNT3Q6L9W6 998 aa6.07□□□□□ -1.44
NUP54-208ENST00000508604 ARHGAP27Q6ZUM4 889 aa6.07□□□□□ -1.44
NUP54-208ENST00000508604 TRIM56Q9BRZ2 755 aaKnown RBP6.07□□□□□ -1.44
NUP54-208ENST00000508604 ZNF576Q9H609 170 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms