RNA–Protein interactions for RNA: ENST00000505615.1

VCAN-206, Transcript of versican, humanhuman

TSL 5

Gene VCAN, Length 810 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-206ENST00000505615 H0YGN5 161 aa9.31□□□□□ -0.92
VCAN-206ENST00000505615 PER1O15534 1290 aaPredicted RBP9.31□□□□□ -0.92
VCAN-206ENST00000505615 SREBF2Q12772 1141 aa9.31□□□□□ -0.92
VCAN-206ENST00000505615 DDX46Q7L014 1031 aaKnown RBP9.31□□□□□ -0.92
VCAN-206ENST00000505615 TMC4Q7Z404 712 aa9.31□□□□□ -0.92
VCAN-206ENST00000505615 PRR14Q9BWN1 585 aa9.31□□□□□ -0.92
VCAN-206ENST00000505615 SCAF8Q9UPN6 1271 aaKnown RBP9.31□□□□□ -0.92
VCAN-206ENST00000505615 UNC80Q8N2C7 3258 aa9.31□□□□□ -0.92
VCAN-206ENST00000505615 EIF4A1P60842 406 aaKnown RBP9.3□□□□□ -0.92
VCAN-206ENST00000505615 EIF4G2P78344 907 aaKnown RBP eCLIP9.3□□□□□ -0.92
VCAN-206ENST00000505615 GPSM2P81274 684 aa9.3□□□□□ -0.92
VCAN-206ENST00000505615 TAF7Q15545 349 aaPredicted RBP9.3□□□□□ -0.92
VCAN-206ENST00000505615 CC2D1BQ5T0F9 858 aaKnown RBP9.3□□□□□ -0.92
VCAN-206ENST00000505615 PRAMEF18Q5VWM3 479 aa9.3□□□□□ -0.92
VCAN-206ENST00000505615 RTF1Q92541 710 aaKnown RBP9.3□□□□□ -0.92
VCAN-206ENST00000505615 GMLQ99445 158 aa9.3□□□□□ -0.92
VCAN-206ENST00000505615 PTPN22Q9Y2R2 807 aa9.3□□□□□ -0.92
VCAN-206ENST00000505615 ERBB4Q15303 1308 aa9.3□□□□□ -0.92
VCAN-206ENST00000505615 RNF223E7ERA6 249 aa9.29□□□□□ -0.92
VCAN-206ENST00000505615 HTATSF1O43719 755 aaKnown RBP9.29□□□□□ -0.92
VCAN-206ENST00000505615 PTPN12Q05209 780 aaKnown RBP9.29□□□□□ -0.92
VCAN-206ENST00000505615 NLRP10Q86W26 655 aa9.29□□□□□ -0.92
VCAN-206ENST00000505615 CELF1Q92879 486 aaKnown RBP9.29□□□□□ -0.92
VCAN-206ENST00000505615 ZNF333Q96JL9 665 aa9.29□□□□□ -0.92
VCAN-206ENST00000505615 NSFL1CQ9UNZ2 370 aaKnown RBP9.29□□□□□ -0.92
VCAN-206ENST00000505615 PCDHB3Q9Y5E6 796 aa9.29□□□□□ -0.92
VCAN-206ENST00000505615 ZSWIM8A7E2V4 1837 aa9.28□□□□□ -0.92
VCAN-206ENST00000505615 C6orf229H3BNL8 230 aa9.28□□□□□ -0.92
VCAN-206ENST00000505615 IGF2BP3O00425 579 aaKnown RBP eCLIP9.28□□□□□ -0.92
VCAN-206ENST00000505615 SLC4A3P48751 1232 aa9.28□□□□□ -0.92
VCAN-206ENST00000505615 PROSER3Q2NL68 480 aa9.28□□□□□ -0.92
VCAN-206ENST00000505615 SPRYD7Q5W111 196 aa9.28□□□□□ -0.92
VCAN-206ENST00000505615 ZNF787Q6DD87 383 aa9.28□□□□□ -0.92
VCAN-206ENST00000505615 RSBN1LQ6PCB5 846 aaPredicted RBP9.28□□□□□ -0.92
VCAN-206ENST00000505615 BLOC1S3Q6QNY0 202 aa9.28□□□□□ -0.92
VCAN-206ENST00000505615 AGBL3Q8NEM8 1001 aa9.28□□□□□ -0.92
VCAN-206ENST00000505615 TBC1D16Q8TBP0 767 aa9.28□□□□□ -0.92
VCAN-206ENST00000505615 CD99L2Q8TCZ2 262 aa9.28□□□□□ -0.92
VCAN-206ENST00000505615 THUMPD2Q9BTF0 503 aaKnown RBP9.28□□□□□ -0.92
VCAN-206ENST00000505615 PRO3102Q9H379 93 aa9.28□□□□□ -0.92
VCAN-206ENST00000505615 MYOZ2Q9NPC6 264 aa9.28□□□□□ -0.92
VCAN-206ENST00000505615 OTOFQ9HC10 1997 aa9.28□□□□□ -0.92
VCAN-206ENST00000505615 SH3TC1Q8TE82 1336 aa9.28□□□□□ -0.92
VCAN-206ENST00000505615 TTC28Q96AY4 2481 aa9.27□□□□□ -0.93
VCAN-206ENST00000505615 ECM29Q5VYK3 1845 aa9.27□□□□□ -0.93
VCAN-206ENST00000505615 ALDH1A1P00352 501 aa9.27□□□□□ -0.93
VCAN-206ENST00000505615 TTLL12Q14166 644 aaPredicted RBP9.27□□□□□ -0.93
VCAN-206ENST00000505615 LDLRAD1Q5T700 205 aa9.27□□□□□ -0.93
VCAN-206ENST00000505615 ERO1AQ96HE7 468 aa9.27□□□□□ -0.93
VCAN-206ENST00000505615 EYA3Q99504 573 aa9.27□□□□□ -0.93
VCAN-206ENST00000505615 SSC5DA1L4H1 1573 aa9.26□□□□□ -0.93
VCAN-206ENST00000505615 ANXA1P04083 346 aa9.26□□□□□ -0.93
VCAN-206ENST00000505615 SF3B3Q15393 1217 aaKnown RBP9.26□□□□□ -0.93
VCAN-206ENST00000505615 NBPF9Q3BBW0 867 aa9.26□□□□□ -0.93
VCAN-206ENST00000505615 VCANP13611 3396 aa9.26□□□□□ -0.93
VCAN-206ENST00000505615 TLL1O43897 1013 aa9.25□□□□□ -0.93
VCAN-206ENST00000505615 USP17L8P0C7I0 530 aa9.25□□□□□ -0.93
VCAN-206ENST00000505615 SLC19A1P41440 591 aa9.25□□□□□ -0.93
VCAN-206ENST00000505615 PRR20EP86478 221 aa9.25□□□□□ -0.93
VCAN-206ENST00000505615 PRR20CP86479 221 aa9.25□□□□□ -0.93
VCAN-206ENST00000505615 PRR20DP86480 221 aa9.25□□□□□ -0.93
VCAN-206ENST00000505615 PRR20BP86481 221 aa9.25□□□□□ -0.93
VCAN-206ENST00000505615 PRR20AP86496 221 aa9.25□□□□□ -0.93
VCAN-206ENST00000505615 PTGDRQ13258 359 aa9.25□□□□□ -0.93
VCAN-206ENST00000505615 CRHR2Q13324 411 aa9.25□□□□□ -0.93
VCAN-206ENST00000505615 PNISRQ8TF01 805 aaKnown RBP9.25□□□□□ -0.93
VCAN-206ENST00000505615 TMEM134Q9H6X4 195 aa9.25□□□□□ -0.93
VCAN-206ENST00000505615 EFCC1Q9HA90 598 aa9.25□□□□□ -0.93
VCAN-206ENST00000505615 PODXL2Q9NZ53 605 aa9.25□□□□□ -0.93
VCAN-206ENST00000505615 TRMT112Q9UI30 125 aaKnown RBP9.25□□□□□ -0.93
VCAN-206ENST00000505615 ALPK3Q96L96 1907 aa9.25□□□□□ -0.93
VCAN-206ENST00000505615 MANSC4A6NHS7 340 aaPredicted RBP9.24□□□□□ -0.93
VCAN-206ENST00000505615 UFL1O94874 794 aa9.24□□□□□ -0.93
VCAN-206ENST00000505615 DNAJB2P25686 324 aa9.24□□□□□ -0.93
VCAN-206ENST00000505615 MLLT3P42568 568 aaPredicted RBP9.24□□□□□ -0.93
VCAN-206ENST00000505615 TCIRG1Q13488 830 aa9.24□□□□□ -0.93
VCAN-206ENST00000505615 PRKG1Q13976 671 aa9.24□□□□□ -0.93
VCAN-206ENST00000505615 HSP90AB3PQ58FF7 597 aa9.24□□□□□ -0.93
VCAN-206ENST00000505615 ARMC9Q7Z3E5 817 aa9.24□□□□□ -0.93
VCAN-206ENST00000505615 ZNF428Q96B54 188 aa9.24□□□□□ -0.93
VCAN-206ENST00000505615 ZNF775Q96BV0 537 aaPredicted RBP9.24□□□□□ -0.93
VCAN-206ENST00000505615 WNK4Q96J92 1243 aa9.24□□□□□ -0.93
VCAN-206ENST00000505615 ZC3H12CQ9C0D7 883 aaKnown RBP9.24□□□□□ -0.93
VCAN-206ENST00000505615 FZD1Q9UP38 647 aa9.24□□□□□ -0.93
VCAN-206ENST00000505615 PTCH2Q9Y6C5 1203 aa9.24□□□□□ -0.93
VCAN-206ENST00000505615 SPEF2Q9C093 1822 aa9.24□□□□□ -0.93
VCAN-206ENST00000505615 SOX1O00570 391 aaPredicted RBP9.23□□□□□ -0.93
VCAN-206ENST00000505615 WNT10BO00744 389 aa9.23□□□□□ -0.93
VCAN-206ENST00000505615 U2AF1L5P0DN76 240 aaPredicted RBP9.23□□□□□ -0.93
VCAN-206ENST00000505615 NF2P35240 595 aa9.23□□□□□ -0.93
VCAN-206ENST00000505615 GJA5P36382 358 aa9.23□□□□□ -0.93
VCAN-206ENST00000505615 INHBEP58166 350 aa9.23□□□□□ -0.93
VCAN-206ENST00000505615 U2AF1Q01081 240 aaKnown RBP eCLIP9.23□□□□□ -0.93
VCAN-206ENST00000505615 ANKLE1Q8NAG6 615 aa9.23□□□□□ -0.93
VCAN-206ENST00000505615 SHISA4Q96DD7 197 aa9.23□□□□□ -0.93
VCAN-206ENST00000505615 CLMNQ96JQ2 1002 aa9.23□□□□□ -0.93
VCAN-206ENST00000505615 COL1A1P02452 1464 aaPredicted RBP9.22□□□□□ -0.93
VCAN-206ENST00000505615 USP17L3A6NCW0 530 aa9.22□□□□□ -0.93
VCAN-206ENST00000505615 USP17L4A6NCW7 530 aa9.22□□□□□ -0.93
VCAN-206ENST00000505615 ACTN4O43707 911 aaKnown RBP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms