RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 TXNRD3Q86VQ6 643 aa12.32□□□□□ -0.44
NUP54-203ENST00000504173 VPS37DQ86XT2 251 aa12.32□□□□□ -0.44
NUP54-203ENST00000504173 CLASRPQ8N2M8 674 aaKnown RBP12.32□□□□□ -0.44
NUP54-203ENST00000504173 DBNDD1Q9H9R9 158 aa12.32□□□□□ -0.44
NUP54-203ENST00000504173 ZBTB47Q9UFB7 747 aaPredicted RBP12.32□□□□□ -0.44
NUP54-203ENST00000504173 BRCA2P51587 3418 aa12.32□□□□□ -0.44
NUP54-203ENST00000504173 IRS2Q9Y4H2 1338 aa12.32□□□□□ -0.44
NUP54-203ENST00000504173 PAPPA2Q9BXP8 1791 aa12.31□□□□□ -0.44
NUP54-203ENST00000504173 ECE2O60344 883 aa12.31□□□□□ -0.44
NUP54-203ENST00000504173 ADORA1P30542 326 aa12.31□□□□□ -0.44
NUP54-203ENST00000504173 HIBADHP31937 336 aaKnown RBP12.31□□□□□ -0.44
NUP54-203ENST00000504173 GORABQ5T7V8 394 aa12.31□□□□□ -0.44
NUP54-203ENST00000504173 AACSQ86V21 672 aa12.31□□□□□ -0.44
NUP54-203ENST00000504173 TRPM4Q8TD43 1214 aa12.31□□□□□ -0.44
NUP54-203ENST00000504173 XAGE2Q96GT9 111 aa12.31□□□□□ -0.44
NUP54-203ENST00000504173 CFHR5Q9BXR6 569 aa12.31□□□□□ -0.44
NUP54-203ENST00000504173 CENPFP49454 3210 aa12.31□□□□□ -0.44
NUP54-203ENST00000504173 ARAP2Q8WZ64 1704 aa12.31□□□□□ -0.44
NUP54-203ENST00000504173 H0YGN5 161 aa12.3□□□□□ -0.44
NUP54-203ENST00000504173 SMARCA5O60264 1052 aaPredicted RBP12.3□□□□□ -0.44
NUP54-203ENST00000504173 TBC1D8O95759 1140 aa12.3□□□□□ -0.44
NUP54-203ENST00000504173 BCAMP50895 628 aa12.3□□□□□ -0.44
NUP54-203ENST00000504173 ANKRD45Q5TZF3 282 aa12.3□□□□□ -0.44
NUP54-203ENST00000504173 RASAL3Q86YV0 1011 aa12.3□□□□□ -0.44
NUP54-203ENST00000504173 SMC5Q8IY18 1101 aa12.3□□□□□ -0.44
NUP54-203ENST00000504173 EAF2Q96CJ1 260 aaPredicted RBP12.3□□□□□ -0.44
NUP54-203ENST00000504173 CCDC136Q96JN2 1154 aa12.3□□□□□ -0.44
NUP54-203ENST00000504173 FAM84BQ96KN1 310 aaPredicted RBP12.3□□□□□ -0.44
NUP54-203ENST00000504173 COA1Q9GZY4 146 aa12.3□□□□□ -0.44
NUP54-203ENST00000504173 CCDC8Q9H0W5 538 aaPredicted RBP12.3□□□□□ -0.44
NUP54-203ENST00000504173 ZNRF3Q9ULT6 936 aa12.3□□□□□ -0.44
NUP54-203ENST00000504173 FRAT2O75474 233 aaPredicted RBP12.29□□□□□ -0.44
NUP54-203ENST00000504173 IFIT2P09913 472 aaKnown RBP12.29□□□□□ -0.44
NUP54-203ENST00000504173 B4GALNT3Q6L9W6 998 aa12.29□□□□□ -0.44
NUP54-203ENST00000504173 DLK2Q6UY11 383 aa12.29□□□□□ -0.44
NUP54-203ENST00000504173 KRT26Q7Z3Y9 468 aa12.29□□□□□ -0.44
NUP54-203ENST00000504173 PODNQ7Z5L7 613 aa12.29□□□□□ -0.44
NUP54-203ENST00000504173 FBXO33Q7Z6M2 555 aa12.29□□□□□ -0.44
NUP54-203ENST00000504173 DBNDD2Q9BQY9 259 aa12.29□□□□□ -0.44
NUP54-203ENST00000504173 CD209Q9NNX6 404 aa12.29□□□□□ -0.44
NUP54-203ENST00000504173 GNL3LQ9NVN8 582 aaKnown RBP12.29□□□□□ -0.44
NUP54-203ENST00000504173 TLR7Q9NYK1 1049 aaKnown RBP12.29□□□□□ -0.44
NUP54-203ENST00000504173 UNC80Q8N2C7 3258 aa12.28□□□□□ -0.44
NUP54-203ENST00000504173 YDJCA8MPS7 323 aa12.28□□□□□ -0.44
NUP54-203ENST00000504173 FKTNO75072 461 aa12.28□□□□□ -0.44
NUP54-203ENST00000504173 EN2P19622 333 aaPredicted RBP12.28□□□□□ -0.44
NUP54-203ENST00000504173 PHKA1P46020 1223 aa12.28□□□□□ -0.44
NUP54-203ENST00000504173 CCDC158Q5M9N0 1113 aa12.28□□□□□ -0.44
NUP54-203ENST00000504173 CCDC102BQ68D86 513 aa12.28□□□□□ -0.44
NUP54-203ENST00000504173 CHRDL2Q6WN34 429 aa12.28□□□□□ -0.44
NUP54-203ENST00000504173 FBXW7Q969H0 707 aa12.28□□□□□ -0.44
NUP54-203ENST00000504173 PPP4R2Q9NY27 417 aa12.28□□□□□ -0.44
NUP54-203ENST00000504173 RBM27Q9P2N5 1060 aaKnown RBP12.28□□□□□ -0.44
NUP54-203ENST00000504173 DBNLQ9UJU6 430 aaKnown RBP12.28□□□□□ -0.44
NUP54-203ENST00000504173 RAD17O75943 681 aa12.27□□□□□ -0.45
NUP54-203ENST00000504173 IL1R1P14778 569 aa12.27□□□□□ -0.45
NUP54-203ENST00000504173 TTC39AQ5SRH9 613 aa12.27□□□□□ -0.45
NUP54-203ENST00000504173 TDRD7Q8NHU6 1098 aaKnown RBP12.27□□□□□ -0.45
NUP54-203ENST00000504173 ARMC5Q96C12 935 aa12.27□□□□□ -0.45
NUP54-203ENST00000504173 COL25A1Q9BXS0 654 aaPredicted RBP12.27□□□□□ -0.45
NUP54-203ENST00000504173 PRO3102Q9H379 93 aa12.27□□□□□ -0.45
NUP54-203ENST00000504173 IQSEC3Q9UPP2 1182 aaPredicted RBP12.27□□□□□ -0.45
NUP54-203ENST00000504173 USP17L3A6NCW0 530 aa12.26□□□□□ -0.45
NUP54-203ENST00000504173 USP17L4A6NCW7 530 aa12.26□□□□□ -0.45
NUP54-203ENST00000504173 UQCRFS1P1P0C7P4 283 aa12.26□□□□□ -0.45
NUP54-203ENST00000504173 TM4SF4P48230 202 aa12.26□□□□□ -0.45
NUP54-203ENST00000504173 GTF2IP78347 998 aa12.26□□□□□ -0.45
NUP54-203ENST00000504173 CHAF1AQ13111 956 aaPredicted RBP12.26□□□□□ -0.45
NUP54-203ENST00000504173 TNIP1Q15025 636 aa12.26□□□□□ -0.45
NUP54-203ENST00000504173 CENPQQ7L2Z9 268 aaPredicted RBP12.26□□□□□ -0.45
NUP54-203ENST00000504173 USP17L1Q7RTZ2 530 aa12.26□□□□□ -0.45
NUP54-203ENST00000504173 CHD1LQ86WJ1 897 aa12.26□□□□□ -0.45
NUP54-203ENST00000504173 LNPKQ9C0E8 428 aa12.26□□□□□ -0.45
NUP54-203ENST00000504173 KCNQ5Q9NR82 932 aa12.26□□□□□ -0.45
NUP54-203ENST00000504173 CNOT7Q9UIV1 285 aaKnown RBP12.26□□□□□ -0.45
NUP54-203ENST00000504173 SCN9AQ15858 1988 aa12.25□□□□□ -0.45
NUP54-203ENST00000504173 H7C1D1 291 aa12.25□□□□□ -0.45
NUP54-203ENST00000504173 PSMD14O00487 310 aa12.25□□□□□ -0.45
NUP54-203ENST00000504173 SEMA3EO15041 775 aa12.25□□□□□ -0.45
NUP54-203ENST00000504173 NUCB1Q02818 461 aa12.25□□□□□ -0.45
NUP54-203ENST00000504173 TTLL5Q6EMB2 1281 aa12.25□□□□□ -0.45
NUP54-203ENST00000504173 GPATCH3Q96I76 525 aa12.25□□□□□ -0.45
NUP54-203ENST00000504173 DENND2AQ9ULE3 1009 aa12.25□□□□□ -0.45
NUP54-203ENST00000504173 JAG2Q9Y219 1238 aa12.25□□□□□ -0.45
NUP54-203ENST00000504173 ARID4AP29374 1257 aaPredicted RBP12.24□□□□□ -0.45
NUP54-203ENST00000504173 FKBP1BP68106 108 aa12.24□□□□□ -0.45
NUP54-203ENST00000504173 RASGRF1Q13972 1273 aa12.24□□□□□ -0.45
NUP54-203ENST00000504173 LAMA3Q16787 3333 aa12.24□□□□□ -0.45
NUP54-203ENST00000504173 STRIP1Q5VSL9 837 aa12.24□□□□□ -0.45
NUP54-203ENST00000504173 DPF2Q92785 391 aa12.24□□□□□ -0.45
NUP54-203ENST00000504173 MYH13Q9UKX3 1938 aa12.24□□□□□ -0.45
NUP54-203ENST00000504173 PSME4Q14997 1843 aa12.23□□□□□ -0.45
NUP54-203ENST00000504173 COL1A1P02452 1464 aaPredicted RBP12.23□□□□□ -0.45
NUP54-203ENST00000504173 FAM205AQ6ZU69 1335 aa12.23□□□□□ -0.45
NUP54-203ENST00000504173 SHTN1A0MZ66 631 aa12.23□□□□□ -0.45
NUP54-203ENST00000504173 ADM5C9JUS6 153 aa12.23□□□□□ -0.45
NUP54-203ENST00000504173 VIL1P09327 827 aaKnown RBP12.23□□□□□ -0.45
NUP54-203ENST00000504173 DACT2Q5SW24 774 aa12.23□□□□□ -0.45
NUP54-203ENST00000504173 OTOP1Q7RTM1 612 aa12.23□□□□□ -0.45
NUP54-203ENST00000504173 MICALL2Q8IY33 904 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms