RNA–Protein interactions for RNA: ENST00000498751.1

SYNE1-231, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 578 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-231ENST00000498751 EXOSC10Q01780 885 aaKnown RBP9.12□□□□□ -0.95
SYNE1-231ENST00000498751 GORABQ5T7V8 394 aa9.12□□□□□ -0.95
SYNE1-231ENST00000498751 MEX3CQ5U5Q3 659 aaKnown RBP9.12□□□□□ -0.95
SYNE1-231ENST00000498751 TBC1D9BQ66K14 1250 aa9.12□□□□□ -0.95
SYNE1-231ENST00000498751 C15orf52Q6ZUT6 534 aaKnown RBP9.12□□□□□ -0.95
SYNE1-231ENST00000498751 ARHGEF1Q92888 912 aaKnown RBP9.12□□□□□ -0.95
SYNE1-231ENST00000498751 ARXQ96QS3 562 aa9.12□□□□□ -0.95
SYNE1-231ENST00000498751 SETDB2Q96T68 719 aa9.12□□□□□ -0.95
SYNE1-231ENST00000498751 MTA3Q9BTC8 594 aa9.12□□□□□ -0.95
SYNE1-231ENST00000498751 SEC31BQ9NQW1 1179 aa9.12□□□□□ -0.95
SYNE1-231ENST00000498751 PNPLA7Q6ZV29 1317 aa9.11□□□□□ -0.95
SYNE1-231ENST00000498751 IRS2Q9Y4H2 1338 aa9.11□□□□□ -0.95
SYNE1-231ENST00000498751 GNPATO15228 680 aa9.11□□□□□ -0.95
SYNE1-231ENST00000498751 TRAK2O60296 914 aa9.11□□□□□ -0.95
SYNE1-231ENST00000498751 TM4SF1P30408 202 aa9.11□□□□□ -0.95
SYNE1-231ENST00000498751 PHKA1P46020 1223 aa9.11□□□□□ -0.95
SYNE1-231ENST00000498751 KCNJ4P48050 445 aa9.11□□□□□ -0.95
SYNE1-231ENST00000498751 NT5C2P49902 561 aa9.11□□□□□ -0.95
SYNE1-231ENST00000498751 CHRNDQ07001 517 aa9.11□□□□□ -0.95
SYNE1-231ENST00000498751 ST3GAL1Q11201 340 aa9.11□□□□□ -0.95
SYNE1-231ENST00000498751 TOB2Q14106 344 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-231ENST00000498751 KLHL40Q2TBA0 621 aa9.11□□□□□ -0.95
SYNE1-231ENST00000498751 ERFEQ4G0M1 354 aa9.11□□□□□ -0.95
SYNE1-231ENST00000498751 DHX32Q7L7V1 743 aaKnown RBP9.11□□□□□ -0.95
SYNE1-231ENST00000498751 ANKRD18AQ8IVF6 992 aa9.11□□□□□ -0.95
SYNE1-231ENST00000498751 TMEM87AQ8NBN3 555 aa9.11□□□□□ -0.95
SYNE1-231ENST00000498751 SPRYD3Q8NCJ5 442 aa9.11□□□□□ -0.95
SYNE1-231ENST00000498751 NLRP3Q96P20 1036 aa9.11□□□□□ -0.95
SYNE1-231ENST00000498751 SEC62Q99442 399 aaKnown RBP9.11□□□□□ -0.95
SYNE1-231ENST00000498751 QTRT2Q9H974 415 aaKnown RBP9.11□□□□□ -0.95
SYNE1-231ENST00000498751 GPHNQ9NQX3 736 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-231ENST00000498751 DUOX1Q9NRD9 1551 aa9.11□□□□□ -0.95
SYNE1-231ENST00000498751 NRXN2Q9P2S2 1712 aa9.11□□□□□ -0.95
SYNE1-231ENST00000498751 COL4A1P02462 1669 aa9.1□□□□□ -0.95
SYNE1-231ENST00000498751 LAMA4Q16363 1823 aa9.1□□□□□ -0.95
SYNE1-231ENST00000498751 KLRG2A4D1S0 409 aaPredicted RBP9.1□□□□□ -0.95
SYNE1-231ENST00000498751 ZPR1O75312 459 aa9.1□□□□□ -0.95
SYNE1-231ENST00000498751 RBM6P78332 1123 aaKnown RBP9.1□□□□□ -0.95
SYNE1-231ENST00000498751 FOXK1P85037 733 aa9.1□□□□□ -0.95
SYNE1-231ENST00000498751 FKBP4Q02790 459 aaKnown RBP eCLIP9.1□□□□□ -0.95
SYNE1-231ENST00000498751 DSG2Q14126 1118 aa9.1□□□□□ -0.95
SYNE1-231ENST00000498751 ME3Q16798 604 aa9.1□□□□□ -0.95
SYNE1-231ENST00000498751 CRY2Q49AN0 593 aa9.1□□□□□ -0.95
SYNE1-231ENST00000498751 TRAPPC3LQ5T215 181 aa9.1□□□□□ -0.95
SYNE1-231ENST00000498751 ZNF772Q68DY9 489 aaPredicted RBP9.1□□□□□ -0.95
SYNE1-231ENST00000498751 KRT27Q7Z3Y8 459 aa9.1□□□□□ -0.95
SYNE1-231ENST00000498751 PLPP6Q8IY26 295 aa9.1□□□□□ -0.95
SYNE1-231ENST00000498751 SPATA5Q8NB90 893 aa9.1□□□□□ -0.95
SYNE1-231ENST00000498751 LLPHQ9BRT6 129 aaKnown RBP9.1□□□□□ -0.95
SYNE1-231ENST00000498751 ANKRD2Q9GZV1 360 aa9.1□□□□□ -0.95
SYNE1-231ENST00000498751 LRRC4BQ9NT99 713 aa9.1□□□□□ -0.95
SYNE1-231ENST00000498751 MINPP1Q9UNW1 487 aa9.1□□□□□ -0.95
SYNE1-231ENST00000498751 LHX6Q9UPM6 363 aa9.1□□□□□ -0.95
SYNE1-231ENST00000498751 TIAM2Q8IVF5 1701 aa9.1□□□□□ -0.95
SYNE1-231ENST00000498751 KIAA1551Q9HCM1 1747 aa9.09□□□□□ -0.95
SYNE1-231ENST00000498751 FSD2A1L4K1 749 aa9.09□□□□□ -0.95
SYNE1-231ENST00000498751 M0R2C6 588 aa9.09□□□□□ -0.95
SYNE1-231ENST00000498751 GPAA1O43292 621 aa9.09□□□□□ -0.95
SYNE1-231ENST00000498751 GNAT2P19087 354 aa9.09□□□□□ -0.95
SYNE1-231ENST00000498751 PDCP20941 246 aa9.09□□□□□ -0.95
SYNE1-231ENST00000498751 DEKP35659 375 aaKnown RBP9.09□□□□□ -0.95
SYNE1-231ENST00000498751 RPS8P62241 208 aaKnown RBP9.09□□□□□ -0.95
SYNE1-231ENST00000498751 MAP3K12Q12852 859 aa9.09□□□□□ -0.95
SYNE1-231ENST00000498751 PKP1Q13835 747 aa9.09□□□□□ -0.95
SYNE1-231ENST00000498751 RASGRF1Q13972 1273 aa9.09□□□□□ -0.95
SYNE1-231ENST00000498751 CCDC129Q6ZRS4 1044 aa9.09□□□□□ -0.95
SYNE1-231ENST00000498751 STOX1Q6ZVD7 989 aa9.09□□□□□ -0.95
SYNE1-231ENST00000498751 FBXO33Q7Z6M2 555 aa9.09□□□□□ -0.95
SYNE1-231ENST00000498751 SMARCC2Q8TAQ2 1214 aa9.09□□□□□ -0.95
SYNE1-231ENST00000498751 ZNF274Q96GC6 653 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-231ENST00000498751 CCDC85AQ96PX6 553 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-231ENST00000498751 PUS7LQ9H0K6 701 aaKnown RBP9.09□□□□□ -0.95
SYNE1-231ENST00000498751 LMBRD1Q9NUN5 540 aa9.09□□□□□ -0.95
SYNE1-231ENST00000498751 TPCN1Q9ULQ1 816 aa9.09□□□□□ -0.95
SYNE1-231ENST00000498751 ATP6V1DQ9Y5K8 247 aa9.09□□□□□ -0.95
SYNE1-231ENST00000498751 NDUFB9Q9Y6M9 179 aa9.09□□□□□ -0.95
SYNE1-231ENST00000498751 BRWD3Q6RI45 1802 aa9.09□□□□□ -0.95
SYNE1-231ENST00000498751 SALL1Q9NSC2 1324 aa9.08□□□□□ -0.96
SYNE1-231ENST00000498751 E7EWF7 191 aa9.08□□□□□ -0.96
SYNE1-231ENST00000498751 LARGE1O95461 756 aa9.08□□□□□ -0.96
SYNE1-231ENST00000498751 FGAP02671 866 aa9.08□□□□□ -0.96
SYNE1-231ENST00000498751 CHGBP05060 677 aa9.08□□□□□ -0.96
SYNE1-231ENST00000498751 PDE6AP16499 860 aa9.08□□□□□ -0.96
SYNE1-231ENST00000498751 IMMTQ16891 758 aaKnown RBP9.08□□□□□ -0.96
SYNE1-231ENST00000498751 TMC4Q7Z404 712 aa9.08□□□□□ -0.96
SYNE1-231ENST00000498751 GTF3C6Q969F1 213 aa9.08□□□□□ -0.96
SYNE1-231ENST00000498751 STRBPQ96SI9 672 aaKnown RBP9.08□□□□□ -0.96
SYNE1-231ENST00000498751 PIH1D3Q9NQM4 214 aaKnown RBP9.08□□□□□ -0.96
SYNE1-231ENST00000498751 DENND2AQ9ULE3 1009 aa9.08□□□□□ -0.96
SYNE1-231ENST00000498751 SMC3Q9UQE7 1217 aa9.08□□□□□ -0.96
SYNE1-231ENST00000498751 LEMD3Q9Y2U8 911 aa9.08□□□□□ -0.96
SYNE1-231ENST00000498751 TAF6LQ9Y6J9 622 aa9.08□□□□□ -0.96
SYNE1-231ENST00000498751 NID2Q14112 1375 aa9.08□□□□□ -0.96
SYNE1-231ENST00000498751 TNRC6CQ9HCJ0 1690 aaKnown RBP9.07□□□□□ -0.96
SYNE1-231ENST00000498751 A0A0G2JS52 829 aa9.07□□□□□ -0.96
SYNE1-231ENST00000498751 PATL2C9JE40 543 aaKnown RBP9.07□□□□□ -0.96
SYNE1-231ENST00000498751 STX6O43752 255 aa9.07□□□□□ -0.96
SYNE1-231ENST00000498751 PFKFB2O60825 505 aa9.07□□□□□ -0.96
SYNE1-231ENST00000498751 ZSCAN22P10073 491 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-231ENST00000498751 GYS1P13807 737 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms