RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 LRRC4BQ9NT99 713 aa18.8■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 FAM177BA6PVY3 158 aa18.79■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 RIOK3O14730 519 aaKnown RBP18.79■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 FGAP02671 866 aa18.79■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 HAND2P61296 217 aa18.79■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 CCDC73Q6ZRK6 1079 aa18.79■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 ILDR2Q71H61 639 aa18.79■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 MB21D2Q8IYB1 491 aaPredicted RBP18.79■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 CACTINQ8WUQ7 758 aaKnown RBP18.79■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 CLIP2Q9UDT6 1046 aa18.79■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 CTNNA3Q9UI47 895 aa18.79■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 AKAP2Q9Y2D5 859 aa18.79■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 CSF1RP07333 972 aa18.78■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 ZFYP08048 801 aaPredicted RBP18.78■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 ZAP70P43403 619 aa18.78■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 FSIP1Q8NA03 581 aa18.78■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 PLA2G12BQ9BX93 195 aa18.78■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 PUS7LQ9H0K6 701 aaKnown RBP18.78■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 RTEL1Q9NZ71 1219 aa18.78■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 PCDHA7Q9UN72 937 aa18.78■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 HPS5Q9UPZ3 1129 aa18.78■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 A0A087WWV3 80 aa18.78■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 PCCAP05165 728 aaPredicted RBP18.78■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 ANTXR2P58335 489 aa18.78■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 WASHC4Q2M389 1173 aa18.78■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 UTP14CQ5TAP6 766 aaKnown RBP18.78■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 CHMP4CQ96CF2 233 aa18.78■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 CCDC85AQ96PX6 553 aaPredicted RBP18.78■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 MYH14Q7Z406 1995 aaKnown RBP18.78■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 AKAP11Q9UKA4 1901 aa18.78■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 ME1P48163 572 aa18.77■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 EN1Q05925 392 aaPredicted RBP18.77■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 IMMTQ16891 758 aaKnown RBP18.77■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 GORABQ5T7V8 394 aa18.77■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 OTUD7BQ6GQQ9 843 aa18.77■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 AMIGO3Q86WK7 504 aa18.77■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 DHX40Q8IX18 779 aaKnown RBP18.77■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 FAM89AQ96GI7 184 aa18.77■□□□□ 0.6
MSH5-SAPCD1-208ENST00000498473 PRC1O43663 620 aa18.77■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 KINO60870 393 aaKnown RBP18.77■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 LRRFIP1Q32MZ4 808 aaKnown RBP18.77■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 HSP90AB3PQ58FF7 597 aa18.77■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 PI16Q6UXB8 463 aa18.77■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 FMR1NBQ8N0W7 255 aaPredicted RBP18.77■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 APPBP2Q92624 585 aa18.77■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 BCL2L12Q9HB09 334 aa18.77■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 CCNL1Q9UK58 526 aaPredicted RBP18.77■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 RIC1Q4ADV7 1423 aa18.77■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.76■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 GOLGA6L19H0YKK7 550 aa18.76■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 PROM2Q8N271 834 aa18.76■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 LINC00116Q8NCU8 138 aa18.76■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 MRFAP1L1Q96HT8 127 aa18.76■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 ABCC12Q96J65 1359 aa18.76■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 ADALQ6DHV7 355 aa18.76■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 LINC00301Q8NCQ3 95 aa18.76■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 BBXQ8WY36 941 aaPredicted RBP18.76■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 ZBTB1Q9Y2K1 713 aa18.76■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 C4AP0C0L4 1744 aa18.75■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 C4BP0C0L5 1744 aa18.75■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 KLF18A0A0U1RQI7 1052 aa18.75■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 MRPS27Q92552 414 aaKnown RBP18.75■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 CLIC4Q9Y696 253 aa18.75■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 A0A1W2PQ27 194 aa18.74■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 A0A1W2PQ64 194 aa18.74■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 A0A1W2PQD8 194 aa18.74■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 CHAF1AQ13111 956 aaPredicted RBP18.74■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 SYNE4Q8N205 404 aa18.74■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 ZBTB38Q8NAP3 1195 aaPredicted RBP18.74■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 ERCC4Q92889 916 aaPredicted RBP18.74■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 ANO10Q9NW15 660 aa18.74■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 CTIFO43310 598 aaKnown RBP18.74■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 FBXO18Q8NFZ0 1043 aa18.74■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 C8orf76Q96K31 380 aa18.74■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 RIPOR2Q9Y4F9 1068 aa18.74■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 A0A1B0GVL5 298 aa18.73■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 GPAA1O43292 621 aa18.73■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 IFIT5Q13325 482 aaKnown RBP18.73■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 ARID5BQ14865 1188 aa18.73■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 EZH2Q15910 746 aaKnown RBP18.73■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 NCOA7Q8NI08 942 aa18.73■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 NBPF3Q9H094 633 aa18.73■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 GJB4Q9NTQ9 266 aa18.73■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 NEDD4P46934 1319 aa18.73■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 MYO5AQ9Y4I1 1855 aaKnown RBP18.73■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 GOLGA8BA8MQT2 603 aa18.73■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 MCAMP43121 646 aa18.73■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 NDUFA8P51970 172 aa18.73■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 RAB11FIP4Q86YS3 637 aa18.73■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 LRRC8AQ8IWT6 810 aa18.73■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 NKX2-3Q8TAU0 364 aa18.73■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 ARID3AQ99856 593 aa18.73■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 CCDC94Q9BW85 323 aaPredicted RBP18.73■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 ORC3Q9UBD5 711 aaPredicted RBP18.73■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 POLR3DP05423 398 aaPredicted RBP18.72■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 CYP19A1P11511 503 aaPredicted RBP18.72■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 CRKLP46109 303 aaKnown RBP18.72■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 ATP2B3Q16720 1220 aa18.72■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 POLR3EQ9NVU0 708 aa18.72■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 TNS1Q9HBL0 1735 aaKnown RBP18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms