RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 KIF14Q15058 1648 aa6.39□□□□□ -1.39
USP54-217ENST00000498213 ZC3H13Q5T200 1668 aaKnown RBP6.39□□□□□ -1.39
USP54-217ENST00000498213 BTBD11A6QL63 1104 aa6.39□□□□□ -1.39
USP54-217ENST00000498213 KIF3BO15066 747 aa6.39□□□□□ -1.39
USP54-217ENST00000498213 NRG1Q02297 640 aaPredicted RBP6.39□□□□□ -1.39
USP54-217ENST00000498213 LRP8Q14114 963 aa6.39□□□□□ -1.39
USP54-217ENST00000498213 TTC39BQ5VTQ0 682 aaPredicted RBP6.39□□□□□ -1.39
USP54-217ENST00000498213 B4GALNT3Q6L9W6 998 aa6.39□□□□□ -1.39
USP54-217ENST00000498213 HFE2Q6ZVN8 426 aa6.39□□□□□ -1.39
USP54-217ENST00000498213 NLRP13Q86W25 1043 aa6.39□□□□□ -1.39
USP54-217ENST00000498213 HELQQ8TDG4 1101 aa6.39□□□□□ -1.39
USP54-217ENST00000498213 LENG1Q96BZ8 264 aaPredicted RBP6.39□□□□□ -1.39
USP54-217ENST00000498213 NSUN5Q96P11 429 aaKnown RBP6.39□□□□□ -1.39
USP54-217ENST00000498213 FRRS1LQ9P0K9 344 aa6.39□□□□□ -1.39
USP54-217ENST00000498213 CDK11AQ9UQ88 783 aaPredicted RBP6.39□□□□□ -1.39
USP54-217ENST00000498213 EID1Q9Y6B2 187 aa6.39□□□□□ -1.39
USP54-217ENST00000498213 PZPP20742 1482 aa6.39□□□□□ -1.39
USP54-217ENST00000498213 SAMD9Q5K651 1589 aa6.39□□□□□ -1.39
USP54-217ENST00000498213 TMEM88BA6NKF7 163 aa6.38□□□□□ -1.39
USP54-217ENST00000498213 MMP20O60882 483 aa6.38□□□□□ -1.39
USP54-217ENST00000498213 AAMPQ13685 434 aa6.38□□□□□ -1.39
USP54-217ENST00000498213 TRIP4Q15650 581 aaPredicted RBP6.38□□□□□ -1.39
USP54-217ENST00000498213 PERM1Q5SV97 790 aa6.38□□□□□ -1.39
USP54-217ENST00000498213 SHISA2Q6UWI4 295 aa6.38□□□□□ -1.39
USP54-217ENST00000498213 TP53INP1Q96A56 240 aa6.38□□□□□ -1.39
USP54-217ENST00000498213 SMG9Q9H0W8 520 aaKnown RBP6.38□□□□□ -1.39
USP54-217ENST00000498213 SAMD9LQ8IVG5 1584 aa6.38□□□□□ -1.39
USP54-217ENST00000498213 SHPRHQ149N8 1683 aa6.37□□□□□ -1.39
USP54-217ENST00000498213 RPLP1P05386 114 aaKnown RBP6.37□□□□□ -1.39
USP54-217ENST00000498213 SSFA2P28290 1259 aa6.37□□□□□ -1.39
USP54-217ENST00000498213 AFF1P51825 1210 aaKnown RBP6.37□□□□□ -1.39
USP54-217ENST00000498213 FAM26DQ5JW98 314 aa6.37□□□□□ -1.39
USP54-217ENST00000498213 BRINP3Q76B58 766 aa6.37□□□□□ -1.39
USP54-217ENST00000498213 WFDC8Q8IUA0 241 aa6.37□□□□□ -1.39
USP54-217ENST00000498213 GTF3C2Q8WUA4 911 aaPredicted RBP6.37□□□□□ -1.39
USP54-217ENST00000498213 DDX17Q92841 729 aaKnown RBP6.37□□□□□ -1.39
USP54-217ENST00000498213 SPACA7Q96KW9 195 aa6.37□□□□□ -1.39
USP54-217ENST00000498213 KRTAP4-12Q9BQ66 201 aa6.37□□□□□ -1.39
USP54-217ENST00000498213 LPIN3Q9BQK8 851 aa6.37□□□□□ -1.39
USP54-217ENST00000498213 PPP1R1BQ9UD71 204 aaPredicted RBP6.37□□□□□ -1.39
USP54-217ENST00000498213 USTQ9Y2C2 406 aa6.37□□□□□ -1.39
USP54-217ENST00000498213 PRDM15P57071 1507 aaPredicted RBP6.36□□□□□ -1.39
USP54-217ENST00000498213 NCOA2Q15596 1464 aa6.36□□□□□ -1.39
USP54-217ENST00000498213 LOC102724428A0A0B4J2F2 783 aa6.36□□□□□ -1.39
USP54-217ENST00000498213 ZBTB42B2RXF5 422 aa6.36□□□□□ -1.39
USP54-217ENST00000498213 ZBTB39O15060 712 aa6.36□□□□□ -1.39
USP54-217ENST00000498213 ABL1P00519 1130 aa6.36□□□□□ -1.39
USP54-217ENST00000498213 ATF3P18847 181 aa6.36□□□□□ -1.39
USP54-217ENST00000498213 SOX18P35713 384 aa6.36□□□□□ -1.39
USP54-217ENST00000498213 SCNN1AP37088 669 aa6.36□□□□□ -1.39
USP54-217ENST00000498213 SIK1P57059 783 aa6.36□□□□□ -1.39
USP54-217ENST00000498213 DNM1Q05193 864 aaKnown RBP6.36□□□□□ -1.39
USP54-217ENST00000498213 NOM1Q5C9Z4 860 aaKnown RBP6.36□□□□□ -1.39
USP54-217ENST00000498213 DMRTC2Q8IXT2 367 aaPredicted RBP6.36□□□□□ -1.39
USP54-217ENST00000498213 LRRC59Q96AG4 307 aaKnown RBP6.36□□□□□ -1.39
USP54-217ENST00000498213 NUDT16Q96DE0 195 aaKnown RBP6.36□□□□□ -1.39
USP54-217ENST00000498213 PLXNC1O60486 1568 aa6.35□□□□□ -1.39
USP54-217ENST00000498213 J3QW42 95 aa6.35□□□□□ -1.39
USP54-217ENST00000498213 HYAL3O43820 417 aaPredicted RBP6.35□□□□□ -1.39
USP54-217ENST00000498213 MPSTP25325 297 aa6.35□□□□□ -1.39
USP54-217ENST00000498213 HYAL2Q12891 473 aa6.35□□□□□ -1.39
USP54-217ENST00000498213 MSL1Q68DK7 614 aa6.35□□□□□ -1.39
USP54-217ENST00000498213 ALKBH2Q6NS38 261 aa6.35□□□□□ -1.39
USP54-217ENST00000498213 ZNF438Q7Z4V0 828 aa6.35□□□□□ -1.39
USP54-217ENST00000498213 ATCAYQ86WG3 371 aa6.35□□□□□ -1.39
USP54-217ENST00000498213 FMR1NBQ8N0W7 255 aaPredicted RBP6.35□□□□□ -1.39
USP54-217ENST00000498213 EDEM1Q92611 657 aa6.35□□□□□ -1.39
USP54-217ENST00000498213 PLD4Q96BZ4 506 aa6.35□□□□□ -1.39
USP54-217ENST00000498213 ABI2Q9NYB9 513 aaPredicted RBP6.35□□□□□ -1.39
USP54-217ENST00000498213 TIAM1Q13009 1591 aa6.35□□□□□ -1.39
USP54-217ENST00000498213 DIP2AQ14689 1571 aa6.35□□□□□ -1.39
USP54-217ENST00000498213 ATRNO75882 1429 aa6.34□□□□□ -1.39
USP54-217ENST00000498213 TROQ12816 1431 aaPredicted RBP6.34□□□□□ -1.39
USP54-217ENST00000498213 PNPLA6Q8IY17 1366 aa6.34□□□□□ -1.39
USP54-217ENST00000498213 CARNS1A5YM72 827 aa6.34□□□□□ -1.39
USP54-217ENST00000498213 FAM177BA6PVY3 158 aa6.34□□□□□ -1.39
USP54-217ENST00000498213 C8orf34Q49A92 452 aa6.34□□□□□ -1.39
USP54-217ENST00000498213 GDF6Q6KF10 455 aaPredicted RBP6.34□□□□□ -1.39
USP54-217ENST00000498213 OR13H1Q8NG92 308 aa6.34□□□□□ -1.39
USP54-217ENST00000498213 AHDC1Q5TGY3 1603 aaPredicted RBP6.34□□□□□ -1.39
USP54-217ENST00000498213 RTEL1-TNFRSF6BF6WH68 1400 aa6.33□□□□□ -1.4
USP54-217ENST00000498213 CLIP1P30622 1438 aa6.33□□□□□ -1.4
USP54-217ENST00000498213 FAM13AO94988 1023 aa6.33□□□□□ -1.4
USP54-217ENST00000498213 EIF1AXP47813 144 aaKnown RBP6.33□□□□□ -1.4
USP54-217ENST00000498213 PDE4CQ08493 712 aa6.33□□□□□ -1.4
USP54-217ENST00000498213 MTMR3Q13615 1198 aa6.33□□□□□ -1.4
USP54-217ENST00000498213 PDE12Q6L8Q7 609 aaKnown RBP6.33□□□□□ -1.4
USP54-217ENST00000498213 NCAPG2Q86XI2 1143 aa6.33□□□□□ -1.4
USP54-217ENST00000498213 TTC9Q92623 222 aa6.33□□□□□ -1.4
USP54-217ENST00000498213 SSBP4Q9BWG4 385 aaPredicted RBP6.33□□□□□ -1.4
USP54-217ENST00000498213 TIMELESSQ9UNS1 1208 aa6.33□□□□□ -1.4
USP54-217ENST00000498213 CDC42BPBQ9Y5S2 1711 aa6.33□□□□□ -1.4
USP54-217ENST00000498213 FMN1Q68DA7 1419 aa6.33□□□□□ -1.4
USP54-217ENST00000498213 SYCP2Q9BX26 1530 aa6.32□□□□□ -1.4
USP54-217ENST00000498213 SMNDC1O75940 238 aaKnown RBP eCLIP6.32□□□□□ -1.4
USP54-217ENST00000498213 HOXD8P13378 290 aaPredicted RBP6.32□□□□□ -1.4
USP54-217ENST00000498213 MZF1P28698 734 aaPredicted RBP6.32□□□□□ -1.4
USP54-217ENST00000498213 DTWD1Q8N5C7 304 aa6.32□□□□□ -1.4
USP54-217ENST00000498213 C19orf44Q9H6X5 657 aa6.32□□□□□ -1.4
USP54-217ENST00000498213 ELP3Q9H9T3 547 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms