RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, human

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B1-212	ENST00000496458	AKAP2	Q9Y2D5	859 aa		10.27	□□□□□ -0.77
SF3B1-212	ENST00000496458	CYP11A1	P05108	521 aa		10.26	□□□□□ -0.77
SF3B1-212	ENST00000496458	XRCC5	P13010	732 aa	Known RBP	10.26	□□□□□ -0.77
SF3B1-212	ENST00000496458	POU4F3	Q15319	338 aa		10.26	□□□□□ -0.77
SF3B1-212	ENST00000496458	EAPP	Q56P03	285 aa	Predicted RBP	10.26	□□□□□ -0.77
SF3B1-212	ENST00000496458	ANKRD34A	Q69YU3	496 aa		10.26	□□□□□ -0.77
SF3B1-212	ENST00000496458	GPN3	Q9UHW5	284 aa	Predicted RBP	10.26	□□□□□ -0.77
SF3B1-212	ENST00000496458	SPG7	Q9UQ90	795 aa		10.26	□□□□□ -0.77
SF3B1-212	ENST00000496458	SART1	O43290	800 aa	Known RBP	10.25	□□□□□ -0.77
SF3B1-212	ENST00000496458	CTSB	P07858	339 aa		10.25	□□□□□ -0.77
SF3B1-212	ENST00000496458	PREP	P48147	710 aa		10.25	□□□□□ -0.77
SF3B1-212	ENST00000496458	NUTM2G	Q5VZR2	741 aa		10.25	□□□□□ -0.77
SF3B1-212	ENST00000496458	NPAS4	Q8IUM7	802 aa		10.25	□□□□□ -0.77
SF3B1-212	ENST00000496458	UTP4	Q969X6	686 aa	Known RBP	10.25	□□□□□ -0.77
SF3B1-212	ENST00000496458	CORO1B	Q9BR76	489 aa		10.25	□□□□□ -0.77
SF3B1-212	ENST00000496458	TMPRSS13	Q9BYE2	586 aa		10.25	□□□□□ -0.77
SF3B1-212	ENST00000496458	ZFYVE1	Q9HBF4	777 aa		10.25	□□□□□ -0.77
SF3B1-212	ENST00000496458	MEGF11	A6BM72	1044 aa		10.24	□□□□□ -0.77
SF3B1-212	ENST00000496458	ECEL1	O95672	775 aa		10.24	□□□□□ -0.77
SF3B1-212	ENST00000496458	ITGB7	P26010	798 aa		10.24	□□□□□ -0.77
SF3B1-212	ENST00000496458	GSTT1	P30711	240 aa		10.24	□□□□□ -0.77
SF3B1-212	ENST00000496458	COL19A1	Q14993	1142 aa		10.24	□□□□□ -0.77
SF3B1-212	ENST00000496458	UVSSA	Q2YD98	709 aa		10.24	□□□□□ -0.77
SF3B1-212	ENST00000496458	PRR23C	Q6ZRP0	262 aa		10.24	□□□□□ -0.77
SF3B1-212	ENST00000496458	ARMC10	Q8N2F6	343 aa		10.24	□□□□□ -0.77
SF3B1-212	ENST00000496458	C3orf58	Q8NDZ4	430 aa		10.24	□□□□□ -0.77
SF3B1-212	ENST00000496458	FAM46A	Q96IP4	442 aa	Known RBP	10.24	□□□□□ -0.77
SF3B1-212	ENST00000496458	SRCIN1	Q9C0H9	1055 aa		10.24	□□□□□ -0.77
SF3B1-212	ENST00000496458	GIPC1	O14908	333 aa		10.23	□□□□□ -0.77
SF3B1-212	ENST00000496458	PRPF40A	O75400	957 aa	Known RBP	10.23	□□□□□ -0.77
SF3B1-212	ENST00000496458	EXOSC6	Q5RKV6	272 aa	Known RBP	10.23	□□□□□ -0.77
SF3B1-212	ENST00000496458	C12orf49	Q9H741	205 aa		10.23	□□□□□ -0.77
SF3B1-212	ENST00000496458	CYP4F12	Q9HCS2	524 aa		10.23	□□□□□ -0.77
SF3B1-212	ENST00000496458	ZBTB7C	A1YPR0	619 aa		10.22	□□□□□ -0.77
SF3B1-212	ENST00000496458	AP3B2	Q13367	1082 aa		10.22	□□□□□ -0.77
SF3B1-212	ENST00000496458	C12orf50	Q8NA57	414 aa	Predicted RBP	10.22	□□□□□ -0.77
SF3B1-212	ENST00000496458	TMEM39A	Q9NV64	488 aa		10.22	□□□□□ -0.77
SF3B1-212	ENST00000496458	DHX15	O43143	795 aa	Known RBP	10.21	□□□□□ -0.77
SF3B1-212	ENST00000496458	PPP2R3A	Q06190	1150 aa		10.21	□□□□□ -0.77
SF3B1-212	ENST00000496458	PRSS36	Q5K4E3	855 aa		10.21	□□□□□ -0.77
SF3B1-212	ENST00000496458	SMG8	Q8ND04	991 aa	Known RBP	10.21	□□□□□ -0.77
SF3B1-212	ENST00000496458	MYRFL	Q96LU7	910 aa		10.21	□□□□□ -0.77
SF3B1-212	ENST00000496458	DUSP9	Q99956	384 aa	Known RBP	10.21	□□□□□ -0.77
SF3B1-212	ENST00000496458	SUGCT	Q9HAC7	445 aa		10.21	□□□□□ -0.77
SF3B1-212	ENST00000496458	RNF19A	Q9NV58	838 aa		10.21	□□□□□ -0.77
SF3B1-212	ENST00000496458	GAS2	O43903	313 aa	Known RBP	10.2	□□□□□ -0.78
SF3B1-212	ENST00000496458	GNA15	P30679	374 aa		10.2	□□□□□ -0.78
SF3B1-212	ENST00000496458	PDE3A	Q14432	1141 aa		10.2	□□□□□ -0.78
SF3B1-212	ENST00000496458	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	10.2	□□□□□ -0.78
SF3B1-212	ENST00000496458	TPTE2	Q6XPS3	522 aa		10.2	□□□□□ -0.78
SF3B1-212	ENST00000496458	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	10.2	□□□□□ -0.78
SF3B1-212	ENST00000496458	FAM8A1	Q9UBU6	413 aa		10.2	□□□□□ -0.78
SF3B1-212	ENST00000496458	RAX	Q9Y2V3	346 aa		10.2	□□□□□ -0.78
SF3B1-212	ENST00000496458	FBXO24	O75426	580 aa		10.19	□□□□□ -0.78
SF3B1-212	ENST00000496458	TIAF1	O95411	115 aa		10.19	□□□□□ -0.78
SF3B1-212	ENST00000496458	USP17L7	P0C7H9	530 aa		10.19	□□□□□ -0.78
SF3B1-212	ENST00000496458	DRD2	P14416	443 aa		10.19	□□□□□ -0.78
SF3B1-212	ENST00000496458	FGD1	P98174	961 aa		10.19	□□□□□ -0.78
SF3B1-212	ENST00000496458	ZC3H12C	Q9C0D7	883 aa	Known RBP	10.19	□□□□□ -0.78
SF3B1-212	ENST00000496458	BMP3	P12645	472 aa		10.18	□□□□□ -0.78
SF3B1-212	ENST00000496458	FRMD6	Q96NE9	622 aa		10.18	□□□□□ -0.78
SF3B1-212	ENST00000496458	RAD18	Q9NS91	495 aa		10.18	□□□□□ -0.78
SF3B1-212	ENST00000496458	EIF4B	P23588	611 aa	Known RBP	10.17	□□□□□ -0.78
SF3B1-212	ENST00000496458	AKAP4	Q5JQC9	854 aa		10.17	□□□□□ -0.78
SF3B1-212	ENST00000496458	SULF2	Q8IWU5	870 aa		10.17	□□□□□ -0.78
SF3B1-212	ENST00000496458	FAM20C	Q8IXL6	584 aa		10.17	□□□□□ -0.78
SF3B1-212	ENST00000496458	KCNF1	Q9H3M0	494 aa		10.17	□□□□□ -0.78
SF3B1-212	ENST00000496458	STOML1	Q9UBI4	398 aa		10.17	□□□□□ -0.78
SF3B1-212	ENST00000496458	PPM1H	Q9ULR3	514 aa		10.17	□□□□□ -0.78
SF3B1-212	ENST00000496458	GSTP1	P09211	210 aa	Known RBP	10.16	□□□□□ -0.78
SF3B1-212	ENST00000496458	ADH5	P11766	374 aa		10.16	□□□□□ -0.78
SF3B1-212	ENST00000496458	SOX4	Q06945	474 aa	Predicted RBP	10.16	□□□□□ -0.78
SF3B1-212	ENST00000496458	SGO2	Q562F6	1265 aa		10.16	□□□□□ -0.78
SF3B1-212	ENST00000496458	FBXO33	Q7Z6M2	555 aa		10.16	□□□□□ -0.78
SF3B1-212	ENST00000496458	STK35	Q8TDR2	534 aa		10.16	□□□□□ -0.78
SF3B1-212	ENST00000496458	NECAB3	Q96P71	396 aa	Predicted RBP	10.16	□□□□□ -0.78
SF3B1-212	ENST00000496458	HIF3A	Q9Y2N7	669 aa		10.16	□□□□□ -0.78
SF3B1-212	ENST00000496458	ERCC3	P19447	782 aa		10.15	□□□□□ -0.78
SF3B1-212	ENST00000496458	FST	P19883	344 aa		10.15	□□□□□ -0.78
SF3B1-212	ENST00000496458	WDR18	Q9BV38	432 aa		10.15	□□□□□ -0.78
SF3B1-212	ENST00000496458	CEP44	Q9C0F1	390 aa		10.15	□□□□□ -0.78
SF3B1-212	ENST00000496458	CCDC86	Q9H6F5	360 aa	Known RBP	10.15	□□□□□ -0.78
SF3B1-212	ENST00000496458	PARP2	Q9UGN5	583 aa		10.15	□□□□□ -0.78
SF3B1-212	ENST00000496458	AP4E1	Q9UPM8	1137 aa		10.15	□□□□□ -0.78
SF3B1-212	ENST00000496458	ENC1	O14682	589 aa		10.14	□□□□□ -0.79
SF3B1-212	ENST00000496458	AOC2	O75106	756 aa		10.14	□□□□□ -0.79
SF3B1-212	ENST00000496458	LIG1	P18858	919 aa		10.14	□□□□□ -0.79
SF3B1-212	ENST00000496458	BEND4	Q6ZU67	534 aa		10.14	□□□□□ -0.79
SF3B1-212	ENST00000496458	C2CD4A	Q8NCU7	369 aa	Predicted RBP	10.14	□□□□□ -0.79
SF3B1-212	ENST00000496458	KCNB2	Q92953	911 aa		10.14	□□□□□ -0.79
SF3B1-212	ENST00000496458	C7orf69	Q9H7B7	122 aa		10.14	□□□□□ -0.79
SF3B1-212	ENST00000496458	TTF2	Q9UNY4	1162 aa	Known RBP	10.14	□□□□□ -0.79
SF3B1-212	ENST00000496458	AK5	Q9Y6K8	562 aa		10.14	□□□□□ -0.79
SF3B1-212	ENST00000496458	HMX2	A2RU54	273 aa		10.13	□□□□□ -0.79
SF3B1-212	ENST00000496458	NME2	P22392	152 aa		10.13	□□□□□ -0.79
SF3B1-212	ENST00000496458	MAP4	P27816	1152 aa	Known RBP	10.13	□□□□□ -0.79
SF3B1-212	ENST00000496458	RXRB	P28702	533 aa		10.13	□□□□□ -0.79
SF3B1-212	ENST00000496458	USP11	P51784	963 aa		10.13	□□□□□ -0.79
SF3B1-212	ENST00000496458	TAGLN	Q01995	201 aa	Known RBP	10.13	□□□□□ -0.79
SF3B1-212	ENST00000496458	PSMD2	Q13200	908 aa		10.13	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms