RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 BMP2KQ9NSY1 1161 aaPredicted RBP18.64■□□□□ 0.57
CCDC88B-209ENST00000494080 PDE8AO60658 829 aa18.64■□□□□ 0.57
CCDC88B-209ENST00000494080 IVLP07476 585 aa18.64■□□□□ 0.57
CCDC88B-209ENST00000494080 ATP5JP18859 108 aa18.64■□□□□ 0.57
CCDC88B-209ENST00000494080 TMOD2Q9NZR1 351 aa18.64■□□□□ 0.57
CCDC88B-209ENST00000494080 KIF5BP33176 963 aa18.63■□□□□ 0.57
CCDC88B-209ENST00000494080 GIMAP7Q8NHV1 300 aa18.63■□□□□ 0.57
CCDC88B-209ENST00000494080 KIAA1524Q8TCG1 905 aa18.63■□□□□ 0.57
CCDC88B-209ENST00000494080 KCNG4Q8TDN1 519 aa18.63■□□□□ 0.57
CCDC88B-209ENST00000494080 ZNF622Q969S3 477 aaKnown RBP eCLIP18.63■□□□□ 0.572e-6■■■□□ 17.4
CCDC88B-209ENST00000494080 PPRC1Q5VV67 1664 aaKnown RBP18.63■□□□□ 0.57
CCDC88B-209ENST00000494080 EVCP57679 992 aa18.63■□□□□ 0.57
CCDC88B-209ENST00000494080 KIAA1328Q86T90 577 aa18.63■□□□□ 0.57
CCDC88B-209ENST00000494080 APPBP2Q92624 585 aa18.63■□□□□ 0.57
CCDC88B-209ENST00000494080 TLR7Q9NYK1 1049 aaKnown RBP18.63■□□□□ 0.57
CCDC88B-209ENST00000494080 VPS18Q9P253 973 aa18.63■□□□□ 0.57
CCDC88B-209ENST00000494080 ZNF76P36508 570 aa18.62■□□□□ 0.57
CCDC88B-209ENST00000494080 FAM98CQ17RN3 349 aaKnown RBP18.62■□□□□ 0.57
CCDC88B-209ENST00000494080 LRRC24Q50LG9 513 aa18.62■□□□□ 0.57
CCDC88B-209ENST00000494080 OTUD7BQ6GQQ9 843 aa18.62■□□□□ 0.57
CCDC88B-209ENST00000494080 POTEB2H3BUK9 544 aa18.62■□□□□ 0.57
CCDC88B-209ENST00000494080 CALRP27797 417 aaKnown RBP18.62■□□□□ 0.57
CCDC88B-209ENST00000494080 TMTC2Q8N394 836 aa18.62■□□□□ 0.57
CCDC88B-209ENST00000494080 TULP4Q9NRJ4 1543 aa18.62■□□□□ 0.57
CCDC88B-209ENST00000494080 SPTLC2O15270 562 aa18.62■□□□□ 0.57
CCDC88B-209ENST00000494080 EIF5P55010 431 aaKnown RBP18.62■□□□□ 0.57
CCDC88B-209ENST00000494080 ASAP1Q9ULH1 1129 aa18.62■□□□□ 0.57
CCDC88B-209ENST00000494080 JAK2O60674 1132 aa18.62■□□□□ 0.57
CCDC88B-209ENST00000494080 AXIN2Q9Y2T1 843 aa18.62■□□□□ 0.57
CCDC88B-209ENST00000494080 GOLGA6L10A6NI86 522 aa18.61■□□□□ 0.57
CCDC88B-209ENST00000494080 TUBB4AP04350 444 aa18.61■□□□□ 0.57
CCDC88B-209ENST00000494080 RASEFQ8IZ41 740 aa18.61■□□□□ 0.57
CCDC88B-209ENST00000494080 PNPLA6Q8IY17 1366 aa18.61■□□□□ 0.57
CCDC88B-209ENST00000494080 PUM3Q15397 648 aaKnown RBP18.61■□□□□ 0.57
CCDC88B-209ENST00000494080 SLF2Q8IX21 1173 aa18.61■□□□□ 0.57
CCDC88B-209ENST00000494080 ARMT1Q9H993 441 aa18.61■□□□□ 0.57
CCDC88B-209ENST00000494080 STAP2Q9UGK3 403 aa18.61■□□□□ 0.57
CCDC88B-209ENST00000494080 MCM9Q9NXL9 1143 aa18.61■□□□□ 0.57
CCDC88B-209ENST00000494080 ERCC6LQ2NKX8 1250 aa18.6■□□□□ 0.57
CCDC88B-209ENST00000494080 FAM107BQ9H098 131 aa18.6■□□□□ 0.57
CCDC88B-209ENST00000494080 CLSTN2Q9H4D0 955 aa18.6■□□□□ 0.57
CCDC88B-209ENST00000494080 QRICH2Q9H0J4 1663 aa18.6■□□□□ 0.57
CCDC88B-209ENST00000494080 ME3Q16798 604 aa18.6■□□□□ 0.57
CCDC88B-209ENST00000494080 CTR9Q6PD62 1173 aa18.6■□□□□ 0.57
CCDC88B-209ENST00000494080 OSBPL3Q9H4L5 887 aa18.6■□□□□ 0.57
CCDC88B-209ENST00000494080 CARD6Q9BX69 1037 aa18.6■□□□□ 0.57
CCDC88B-209ENST00000494080 TSPY3P0CV98 308 aa18.59■□□□□ 0.57
CCDC88B-209ENST00000494080 TSPY8P0CW00 308 aa18.59■□□□□ 0.57
CCDC88B-209ENST00000494080 ST5P78524 1137 aa18.59■□□□□ 0.57
CCDC88B-209ENST00000494080 IQCEQ6IPM2 695 aa18.59■□□□□ 0.57
CCDC88B-209ENST00000494080 CCDC87Q9NVE4 849 aa18.59■□□□□ 0.57
CCDC88B-209ENST00000494080 AFMP43652 599 aa18.59■□□□□ 0.57
CCDC88B-209ENST00000494080 GOLGA1Q92805 767 aa18.59■□□□□ 0.57
CCDC88B-209ENST00000494080 PRM3Q9NNZ6 103 aa18.59■□□□□ 0.57
CCDC88B-209ENST00000494080 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.59■□□□□ 0.57
CCDC88B-209ENST00000494080 UBA7P41226 1012 aa18.59■□□□□ 0.57
CCDC88B-209ENST00000494080 NRBP1Q9UHY1 535 aa18.59■□□□□ 0.57
CCDC88B-209ENST00000494080 PRDM1O75626 825 aa18.59■□□□□ 0.57
CCDC88B-209ENST00000494080 DBNLQ9UJU6 430 aaKnown RBP18.59■□□□□ 0.57
CCDC88B-209ENST00000494080 LMTK2Q8IWU2 1503 aa18.58■□□□□ 0.57
CCDC88B-209ENST00000494080 NYXQ9GZU5 481 aa18.58■□□□□ 0.57
CCDC88B-209ENST00000494080 PTCH1Q13635 1447 aa18.58■□□□□ 0.57
CCDC88B-209ENST00000494080 KARSQ15046 597 aaKnown RBP18.58■□□□□ 0.56
CCDC88B-209ENST00000494080 TTC31Q49AM3 519 aaPredicted RBP18.58■□□□□ 0.56
CCDC88B-209ENST00000494080 PARP10Q53GL7 1025 aa18.58■□□□□ 0.56
CCDC88B-209ENST00000494080 CDC37L1Q7L3B6 337 aa18.58■□□□□ 0.56
CCDC88B-209ENST00000494080 CERS3Q8IU89 383 aa18.58■□□□□ 0.56
CCDC88B-209ENST00000494080 PUS3Q9BZE2 481 aaKnown RBP18.58■□□□□ 0.56
CCDC88B-209ENST00000494080 CT47A1Q5JQC4 288 aaPredicted RBP18.58■□□□□ 0.56
CCDC88B-209ENST00000494080 LEO1Q8WVC0 666 aaPredicted RBP18.58■□□□□ 0.56
CCDC88B-209ENST00000494080 A0A1B0GVL5 298 aa18.57■□□□□ 0.56
CCDC88B-209ENST00000494080 GNAT2P19087 354 aa18.57■□□□□ 0.56
CCDC88B-209ENST00000494080 ODF2Q5BJF6 829 aa18.57■□□□□ 0.56
CCDC88B-209ENST00000494080 PUF60Q9UHX1 559 aaKnown RBP18.57■□□□□ 0.56
CCDC88B-209ENST00000494080 PICALMQ13492 652 aa18.57■□□□□ 0.56
CCDC88B-209ENST00000494080 ADCK5Q3MIX3 580 aa18.57■□□□□ 0.56
CCDC88B-209ENST00000494080 MYL10Q9BUA6 226 aa18.57■□□□□ 0.56
CCDC88B-209ENST00000494080 COPRSQ9NQ92 184 aa18.57■□□□□ 0.56
CCDC88B-209ENST00000494080 IDEP14735 1019 aa18.57■□□□□ 0.56
CCDC88B-209ENST00000494080 MICALL1Q8N3F8 863 aa18.57■□□□□ 0.56
CCDC88B-209ENST00000494080 RNF187Q5TA31 235 aaPredicted RBP18.56■□□□□ 0.56
CCDC88B-209ENST00000494080 LPIN2Q92539 896 aa18.56■□□□□ 0.56
CCDC88B-209ENST00000494080 NUP88Q99567 741 aaPredicted RBP18.56■□□□□ 0.56
CCDC88B-209ENST00000494080 TM6SF1Q9BZW5 370 aa18.56■□□□□ 0.56
CCDC88B-209ENST00000494080 CCNL1Q9UK58 526 aaPredicted RBP18.56■□□□□ 0.56
CCDC88B-209ENST00000494080 INO80Q9ULG1 1556 aaPredicted RBP18.56■□□□□ 0.56
CCDC88B-209ENST00000494080 SETBP1Q9Y6X0 1596 aa18.56■□□□□ 0.56
CCDC88B-209ENST00000494080 MCM3P25205 808 aa18.56■□□□□ 0.56
CCDC88B-209ENST00000494080 CDCA7Q9BWT1 371 aaPredicted RBP18.56■□□□□ 0.56
CCDC88B-209ENST00000494080 NEK11Q8NG66 645 aa18.55■□□□□ 0.56
CCDC88B-209ENST00000494080 ZNF532Q9HCE3 1301 aa18.55■□□□□ 0.56
CCDC88B-209ENST00000494080 CTAGE15A4D2H0 777 aa18.55■□□□□ 0.56
CCDC88B-209ENST00000494080 CTAGE8P0CG41 777 aa18.55■□□□□ 0.56
CCDC88B-209ENST00000494080 CTAGE6Q86UF2 777 aa18.55■□□□□ 0.56
CCDC88B-209ENST00000494080 CTAGE4Q8IX94 777 aa18.55■□□□□ 0.56
CCDC88B-209ENST00000494080 TCP11L1Q9NUJ3 509 aa18.55■□□□□ 0.56
CCDC88B-209ENST00000494080 ANGEL1Q9UNK9 670 aaKnown RBP18.55■□□□□ 0.56
CCDC88B-209ENST00000494080 LRRC7Q96NW7 1537 aa18.54■□□□□ 0.56
CCDC88B-209ENST00000494080 LZTFL1Q9NQ48 299 aa18.54■□□□□ 0.56
CCDC88B-209ENST00000494080 TFCP2L1Q9NZI6 479 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms