RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 EDC3Q96F86 508 aaKnown RBP11.58□□□□□ -0.56
USP54-214ENST00000492357 LSG1Q9H089 658 aaKnown RBP11.58□□□□□ -0.56
USP54-214ENST00000492357 TAOK3Q9H2K8 898 aa11.58□□□□□ -0.56
USP54-214ENST00000492357 CTNNA3Q9UI47 895 aa11.58□□□□□ -0.56
USP54-214ENST00000492357 TAOK2Q9UL54 1235 aa11.58□□□□□ -0.56
USP54-214ENST00000492357 SOCS7O14512 581 aa11.57□□□□□ -0.56
USP54-214ENST00000492357 PLCG2P16885 1265 aa11.57□□□□□ -0.56
USP54-214ENST00000492357 HSPA4P34932 840 aa11.57□□□□□ -0.56
USP54-214ENST00000492357 KRT32Q14532 448 aa11.57□□□□□ -0.56
USP54-214ENST00000492357 ALX1Q15699 326 aa11.57□□□□□ -0.56
USP54-214ENST00000492357 NSUN4Q96CB9 384 aaKnown RBP11.57□□□□□ -0.56
USP54-214ENST00000492357 FAM227BQ96M60 508 aa11.57□□□□□ -0.56
USP54-214ENST00000492357 RAI14Q9P0K7 980 aa11.57□□□□□ -0.56
USP54-214ENST00000492357 ABCF2Q9UG63 623 aa11.57□□□□□ -0.56
USP54-214ENST00000492357 ZNF646O15015 1829 aaPredicted RBP11.57□□□□□ -0.56
USP54-214ENST00000492357 ZNF532Q9HCE3 1301 aa11.57□□□□□ -0.56
USP54-214ENST00000492357 WTIPA6NIX2 430 aaPredicted RBP11.56□□□□□ -0.56
USP54-214ENST00000492357 PPIP5K2O43314 1243 aa11.56□□□□□ -0.56
USP54-214ENST00000492357 BAG3O95817 575 aa11.56□□□□□ -0.56
USP54-214ENST00000492357 ZKSCAN1P17029 563 aaPredicted RBP11.56□□□□□ -0.56
USP54-214ENST00000492357 ANP32AP39687 249 aaKnown RBP11.56□□□□□ -0.56
USP54-214ENST00000492357 PPP4CP60510 307 aa11.56□□□□□ -0.56
USP54-214ENST00000492357 MFSD14BQ5SR56 506 aa11.56□□□□□ -0.56
USP54-214ENST00000492357 NAA16Q6N069 864 aaPredicted RBP11.56□□□□□ -0.56
USP54-214ENST00000492357 MAGEB6Q8N7X4 407 aa11.56□□□□□ -0.56
USP54-214ENST00000492357 AIDAQ96BJ3 306 aa11.56□□□□□ -0.56
USP54-214ENST00000492357 DDRGK1Q96HY6 314 aa11.56□□□□□ -0.56
USP54-214ENST00000492357 NOL10Q9BSC4 688 aaKnown RBP11.56□□□□□ -0.56
USP54-214ENST00000492357 TM6SF1Q9BZW5 370 aa11.56□□□□□ -0.56
USP54-214ENST00000492357 RBM19Q9Y4C8 960 aaKnown RBP11.56□□□□□ -0.56
USP54-214ENST00000492357 MYO5AQ9Y4I1 1855 aaKnown RBP11.56□□□□□ -0.56
USP54-214ENST00000492357 NDUFB9Q9Y6M9 179 aa11.56□□□□□ -0.56
USP54-214ENST00000492357 CHD4Q14839 1912 aa11.56□□□□□ -0.56
USP54-214ENST00000492357 USP17L3A6NCW0 530 aa11.55□□□□□ -0.56
USP54-214ENST00000492357 USP17L4A6NCW7 530 aa11.55□□□□□ -0.56
USP54-214ENST00000492357 GPAA1O43292 621 aa11.55□□□□□ -0.56
USP54-214ENST00000492357 ECE2O60344 883 aa11.55□□□□□ -0.56
USP54-214ENST00000492357 IARSP41252 1262 aaKnown RBP11.55□□□□□ -0.56
USP54-214ENST00000492357 NECTIN1Q15223 517 aa11.55□□□□□ -0.56
USP54-214ENST00000492357 RABEP1Q15276 862 aa11.55□□□□□ -0.56
USP54-214ENST00000492357 TTLL5Q6EMB2 1281 aa11.55□□□□□ -0.56
USP54-214ENST00000492357 HHIPL2Q6UWX4 724 aa11.55□□□□□ -0.56
USP54-214ENST00000492357 USP17L1Q7RTZ2 530 aa11.55□□□□□ -0.56
USP54-214ENST00000492357 DZIP1Q86YF9 867 aaKnown RBP11.55□□□□□ -0.56
USP54-214ENST00000492357 JDP2Q8WYK2 163 aa11.55□□□□□ -0.56
USP54-214ENST00000492357 OSBP2Q969R2 916 aa11.55□□□□□ -0.56
USP54-214ENST00000492357 NACAP1Q9BZK3 213 aa11.55□□□□□ -0.56
USP54-214ENST00000492357 PPP1R1BQ9UD71 204 aaPredicted RBP11.55□□□□□ -0.56
USP54-214ENST00000492357 WWC3Q9ULE0 1092 aa11.55□□□□□ -0.56
USP54-214ENST00000492357 ZNRF3Q9ULT6 936 aa11.55□□□□□ -0.56
USP54-214ENST00000492357 IQSEC3Q9UPP2 1182 aaPredicted RBP11.55□□□□□ -0.56
USP54-214ENST00000492357 GAKO14976 1311 aa11.55□□□□□ -0.56
USP54-214ENST00000492357 RIMBP2O15034 1052 aa11.54□□□□□ -0.56
USP54-214ENST00000492357 HSPD1P10809 573 aaKnown RBP11.54□□□□□ -0.56
USP54-214ENST00000492357 PCP11498 1178 aaKnown RBP11.54□□□□□ -0.56
USP54-214ENST00000492357 CYP7A1P22680 504 aa11.54□□□□□ -0.56
USP54-214ENST00000492357 DSG3P32926 999 aa11.54□□□□□ -0.56
USP54-214ENST00000492357 GTF2IP78347 998 aa11.54□□□□□ -0.56
USP54-214ENST00000492357 MECOMQ03112 1051 aa11.54□□□□□ -0.56
USP54-214ENST00000492357 CHAF1AQ13111 956 aaPredicted RBP11.54□□□□□ -0.56
USP54-214ENST00000492357 DACT2Q5SW24 774 aa11.54□□□□□ -0.56
USP54-214ENST00000492357 NIM1KQ8IY84 436 aa11.54□□□□□ -0.56
USP54-214ENST00000492357 LARGE2Q8N3Y3 721 aa11.54□□□□□ -0.56
USP54-214ENST00000492357 AGBL3Q8NEM8 1001 aa11.54□□□□□ -0.56
USP54-214ENST00000492357 STRBPQ96SI9 672 aaKnown RBP11.54□□□□□ -0.56
USP54-214ENST00000492357 RIOK1Q9BRS2 568 aaKnown RBP11.54□□□□□ -0.56
USP54-214ENST00000492357 SYT17Q9BSW7 474 aa11.54□□□□□ -0.56
USP54-214ENST00000492357 FHDC1Q9C0D6 1143 aaPredicted RBP11.54□□□□□ -0.56
USP54-214ENST00000492357 PUS7LQ9H0K6 701 aaKnown RBP11.54□□□□□ -0.56
USP54-214ENST00000492357 BCS1LQ9Y276 419 aa11.54□□□□□ -0.56
USP54-214ENST00000492357 DICER1Q9UPY3 1922 aaKnown RBP11.54□□□□□ -0.56
USP54-214ENST00000492357 MROH7-TTC4A0A0A0MT08 1334 aa11.54□□□□□ -0.56
USP54-214ENST00000492357 LAMA4Q16363 1823 aa11.53□□□□□ -0.56
USP54-214ENST00000492357 GPR75-ASB3A0A0A6YYF3 556 aa11.53□□□□□ -0.56
USP54-214ENST00000492357 MAGEB6P1A0A0J9YX57 407 aa11.53□□□□□ -0.56
USP54-214ENST00000492357 PATL2C9JE40 543 aaKnown RBP11.53□□□□□ -0.56
USP54-214ENST00000492357 NFKBIEO00221 500 aa11.53□□□□□ -0.56
USP54-214ENST00000492357 HMGB1P09429 215 aaKnown RBP11.53□□□□□ -0.56
USP54-214ENST00000492357 RPS12P25398 132 aaKnown RBP11.53□□□□□ -0.56
USP54-214ENST00000492357 PSMA5P28066 241 aa11.53□□□□□ -0.56
USP54-214ENST00000492357 PRDX5P30044 214 aa11.53□□□□□ -0.56
USP54-214ENST00000492357 TNIP1Q15025 636 aa11.53□□□□□ -0.56
USP54-214ENST00000492357 AOC3Q16853 763 aa11.53□□□□□ -0.56
USP54-214ENST00000492357 OLFM4Q6UX06 510 aa11.53□□□□□ -0.56
USP54-214ENST00000492357 ZNF589Q86UQ0 364 aaPredicted RBP11.53□□□□□ -0.56
USP54-214ENST00000492357 CRNKL1Q9BZJ0 848 aaKnown RBP11.53□□□□□ -0.56
USP54-214ENST00000492357 IL25Q9H293 177 aa11.53□□□□□ -0.56
USP54-214ENST00000492357 ATP8A2Q9NTI2 1148 aa11.53□□□□□ -0.56
USP54-214ENST00000492357 SERPINA10Q9UK55 444 aa11.53□□□□□ -0.56
USP54-214ENST00000492357 RBM8AQ9Y5S9 174 aaKnown RBP11.53□□□□□ -0.56
USP54-214ENST00000492357 ZC3H4Q9UPT8 1303 aaKnown RBP11.53□□□□□ -0.56
USP54-214ENST00000492357 M0R2C6 588 aa11.52□□□□□ -0.57
USP54-214ENST00000492357 VIL1P09327 827 aaKnown RBP11.52□□□□□ -0.57
USP54-214ENST00000492357 MCM2P49736 904 aa11.52□□□□□ -0.57
USP54-214ENST00000492357 IMMTQ16891 758 aaKnown RBP11.52□□□□□ -0.57
USP54-214ENST00000492357 SNX21Q969T3 373 aa11.52□□□□□ -0.57
USP54-214ENST00000492357 GPR101Q96P66 508 aaPredicted RBP11.52□□□□□ -0.57
USP54-214ENST00000492357 MYH2Q9UKX2 1941 aa11.52□□□□□ -0.57
USP54-214ENST00000492357 SCN9AQ15858 1988 aa11.52□□□□□ -0.57
USP54-214ENST00000492357 ST18O60284 1047 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms