RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 ADH5P11766 374 aa9.05□□□□□ -0.96
SCN1A-206ENST00000491429 OGFOD2Q6N063 350 aa9.05□□□□□ -0.96
SCN1A-206ENST00000491429 FBXL18Q96ME1 805 aa9.05□□□□□ -0.96
SCN1A-206ENST00000491429 AMOTL2Q9Y2J4 779 aa9.05□□□□□ -0.96
SCN1A-206ENST00000491429 ACTL7BQ9Y614 415 aa9.05□□□□□ -0.96
SCN1A-206ENST00000491429 FZD6O60353 706 aa9.04□□□□□ -0.96
SCN1A-206ENST00000491429 POLR3DP05423 398 aaPredicted RBP9.04□□□□□ -0.96
SCN1A-206ENST00000491429 NPR3P17342 541 aa9.04□□□□□ -0.96
SCN1A-206ENST00000491429 BSDC1Q9NW68 430 aaPredicted RBP9.04□□□□□ -0.96
SCN1A-206ENST00000491429 SSFA2P28290 1259 aa9.03□□□□□ -0.96
SCN1A-206ENST00000491429 EHHADHQ08426 723 aa9.03□□□□□ -0.96
SCN1A-206ENST00000491429 ZNF423Q2M1K9 1284 aa9.03□□□□□ -0.96
SCN1A-206ENST00000491429 YIPF2Q9BWQ6 316 aa9.03□□□□□ -0.96
SCN1A-206ENST00000491429 ZFYVE28Q9HCC9 887 aa9.03□□□□□ -0.96
SCN1A-206ENST00000491429 NFICP08651 508 aa9.02□□□□□ -0.97
SCN1A-206ENST00000491429 RAB6AP20340 208 aa9.02□□□□□ -0.97
SCN1A-206ENST00000491429 MAOBP27338 520 aa9.02□□□□□ -0.97
SCN1A-206ENST00000491429 PCDH1Q08174 1060 aa9.02□□□□□ -0.97
SCN1A-206ENST00000491429 FLCNQ8NFG4 579 aa9.02□□□□□ -0.97
SCN1A-206ENST00000491429 CCDC87Q9NVE4 849 aa9.02□□□□□ -0.97
SCN1A-206ENST00000491429 SERPINA10Q9UK55 444 aa9.02□□□□□ -0.97
SCN1A-206ENST00000491429 TMEM88BA6NKF7 163 aa9.01□□□□□ -0.97
SCN1A-206ENST00000491429 ITGB5P18084 799 aa9.01□□□□□ -0.97
SCN1A-206ENST00000491429 USP5P45974 858 aa9.01□□□□□ -0.97
SCN1A-206ENST00000491429 SPRED3Q2MJR0 410 aa9.01□□□□□ -0.97
SCN1A-206ENST00000491429 LCE1DQ5T752 114 aa9.01□□□□□ -0.97
SCN1A-206ENST00000491429 GJD3Q8N144 294 aa9.01□□□□□ -0.97
SCN1A-206ENST00000491429 LRRC4CQ9HCJ2 640 aa9.01□□□□□ -0.97
SCN1A-206ENST00000491429 ZC3H7BQ9UGR2 993 aaKnown RBP9.01□□□□□ -0.97
SCN1A-206ENST00000491429 A0A096LPE4 126 aa9□□□□□ -0.97
SCN1A-206ENST00000491429 A0A1W2PPZ6 126 aa9□□□□□ -0.97
SCN1A-206ENST00000491429 FAM13AO94988 1023 aa9□□□□□ -0.97
SCN1A-206ENST00000491429 GRIA4P48058 902 aa9□□□□□ -0.97
SCN1A-206ENST00000491429 ZNF765Q7L2R6 523 aa9□□□□□ -0.97
SCN1A-206ENST00000491429 SEMA6CQ9H3T2 930 aa9□□□□□ -0.97
SCN1A-206ENST00000491429 PAK6Q9NQU5 681 aaPredicted RBP9□□□□□ -0.97
SCN1A-206ENST00000491429 FAM105AQ9NUU6 356 aa9□□□□□ -0.97
SCN1A-206ENST00000491429 ECEL1O95672 775 aa8.99□□□□□ -0.97
SCN1A-206ENST00000491429 AKAP4Q5JQC9 854 aa8.99□□□□□ -0.97
SCN1A-206ENST00000491429 DYMQ7RTS9 669 aa8.99□□□□□ -0.97
SCN1A-206ENST00000491429 CCNJLQ8IV13 435 aa8.99□□□□□ -0.97
SCN1A-206ENST00000491429 CLEC4MQ9H2X3 399 aaPredicted RBP8.99□□□□□ -0.97
SCN1A-206ENST00000491429 A0A1W2PP55 124 aa8.98□□□□□ -0.97
SCN1A-206ENST00000491429 JAG1P78504 1218 aa8.98□□□□□ -0.97
SCN1A-206ENST00000491429 MAP7Q14244 749 aa8.98□□□□□ -0.97
SCN1A-206ENST00000491429 POU4F3Q15319 338 aa8.98□□□□□ -0.97
SCN1A-206ENST00000491429 DUSP27Q5VZP5 1158 aa8.98□□□□□ -0.97
SCN1A-206ENST00000491429 ASIC4Q96FT7 647 aa8.98□□□□□ -0.97
SCN1A-206ENST00000491429 TCF12Q99081 682 aa8.98□□□□□ -0.97
SCN1A-206ENST00000491429 ACSS3Q9H6R3 686 aa8.98□□□□□ -0.97
SCN1A-206ENST00000491429 ARID3CA6NKF2 412 aa8.97□□□□□ -0.97
SCN1A-206ENST00000491429 CYP11A1P05108 521 aa8.97□□□□□ -0.97
SCN1A-206ENST00000491429 TRIM56Q9BRZ2 755 aaKnown RBP8.97□□□□□ -0.97
SCN1A-206ENST00000491429 LIN7BQ9HAP6 207 aa8.97□□□□□ -0.97
SCN1A-206ENST00000491429 ANO2Q9NQ90 1003 aa8.97□□□□□ -0.97
SCN1A-206ENST00000491429 DYNC1LI2O43237 492 aaPredicted RBP8.96□□□□□ -0.98
SCN1A-206ENST00000491429 EIF4EBP3O60516 100 aaPredicted RBP8.96□□□□□ -0.98
SCN1A-206ENST00000491429 C8AP07357 584 aa8.96□□□□□ -0.98
SCN1A-206ENST00000491429 PHLDB3Q6NSJ2 640 aa8.96□□□□□ -0.98
SCN1A-206ENST00000491429 POU5F2Q8N7G0 328 aa8.96□□□□□ -0.98
SCN1A-206ENST00000491429 AGBL5Q8NDL9 886 aa8.96□□□□□ -0.98
SCN1A-206ENST00000491429 KRTAP4-7Q9BYR0 210 aa8.96□□□□□ -0.98
SCN1A-206ENST00000491429 AP4E1Q9UPM8 1137 aa8.96□□□□□ -0.98
SCN1A-206ENST00000491429 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.95□□□□□ -0.98
SCN1A-206ENST00000491429 JUNBP17275 347 aaPredicted RBP8.95□□□□□ -0.98
SCN1A-206ENST00000491429 CYP27A1Q02318 531 aa8.95□□□□□ -0.98
SCN1A-206ENST00000491429 FKBP4Q02790 459 aaKnown RBP eCLIP8.95□□□□□ -0.98
SCN1A-206ENST00000491429 ZNF211Q13398 564 aaPredicted RBP8.95□□□□□ -0.98
SCN1A-206ENST00000491429 SEZ6L2Q6UXD5 910 aa8.95□□□□□ -0.98
SCN1A-206ENST00000491429 GALNT12Q8IXK2 581 aa8.95□□□□□ -0.98
SCN1A-206ENST00000491429 LGR6Q9HBX8 967 aa8.95□□□□□ -0.98
SCN1A-206ENST00000491429 C1GALT1Q9NS00 363 aa8.95□□□□□ -0.98
SCN1A-206ENST00000491429 RAD18Q9NS91 495 aa8.95□□□□□ -0.98
SCN1A-206ENST00000491429 ABL1P00519 1130 aa8.94□□□□□ -0.98
SCN1A-206ENST00000491429 ASPAP45381 313 aa8.94□□□□□ -0.98
SCN1A-206ENST00000491429 SF3B2Q13435 895 aaKnown RBP8.94□□□□□ -0.98
SCN1A-206ENST00000491429 USPL1Q5W0Q7 1092 aa8.94□□□□□ -0.98
SCN1A-206ENST00000491429 ZNF574Q6ZN55 896 aaPredicted RBP8.94□□□□□ -0.98
SCN1A-206ENST00000491429 GSX1Q9H4S2 264 aaPredicted RBP8.94□□□□□ -0.98
SCN1A-206ENST00000491429 CARNS1A5YM72 827 aa8.93□□□□□ -0.98
SCN1A-206ENST00000491429 WFDC3Q8IUB2 231 aa8.93□□□□□ -0.98
SCN1A-206ENST00000491429 BCL7CQ8WUZ0 217 aaPredicted RBP8.93□□□□□ -0.98
SCN1A-206ENST00000491429 CORO1BQ9BR76 489 aa8.93□□□□□ -0.98
SCN1A-206ENST00000491429 DAGLAQ9Y4D2 1042 aa8.93□□□□□ -0.98
SCN1A-206ENST00000491429 PAPLNO95428 1278 aa8.92□□□□□ -0.98
SCN1A-206ENST00000491429 B3GALT4O96024 378 aa8.92□□□□□ -0.98
SCN1A-206ENST00000491429 HP1BP3Q5SSJ5 553 aaPredicted RBP8.92□□□□□ -0.98
SCN1A-206ENST00000491429 AOC2O75106 756 aa8.91□□□□□ -0.98
SCN1A-206ENST00000491429 SPRED2Q7Z698 418 aa8.91□□□□□ -0.98
SCN1A-206ENST00000491429 ZNF576Q9H609 170 aa8.91□□□□□ -0.98
SCN1A-206ENST00000491429 SLC5A6Q9Y289 635 aa8.91□□□□□ -0.98
SCN1A-206ENST00000491429 OGFOD3Q6PK18 319 aa8.9□□□□□ -0.98
SCN1A-206ENST00000491429 WDR18Q9BV38 432 aa8.9□□□□□ -0.98
SCN1A-206ENST00000491429 ZFYVE1Q9HBF4 777 aa8.9□□□□□ -0.98
SCN1A-206ENST00000491429 PPP1R9AQ9ULJ8 1098 aa8.9□□□□□ -0.98
SCN1A-206ENST00000491429 MTMR7Q9Y216 660 aa8.9□□□□□ -0.98
SCN1A-206ENST00000491429 PDE3AQ14432 1141 aa8.89□□□□□ -0.99
SCN1A-206ENST00000491429 PLCL1Q15111 1095 aa8.89□□□□□ -0.99
SCN1A-206ENST00000491429 BNIP3Q12983 259 aa8.88□□□□□ -0.99
SCN1A-206ENST00000491429 ZNF792Q3KQV3 632 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms