RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 ANTXR1Q9H6X2 564 aa19.09■□□□□ 0.65
SYNE1-227ENST00000489156 HELLSQ9NRZ9 838 aa19.09■□□□□ 0.65
SYNE1-227ENST00000489156 USP17L3A6NCW0 530 aa19.08■□□□□ 0.65
SYNE1-227ENST00000489156 USP17L4A6NCW7 530 aa19.08■□□□□ 0.65
SYNE1-227ENST00000489156 ZBTB22O15209 634 aa19.08■□□□□ 0.65
SYNE1-227ENST00000489156 SLC4A3P48751 1232 aa19.08■□□□□ 0.65
SYNE1-227ENST00000489156 MCMDC2Q4G0Z9 681 aa19.08■□□□□ 0.65
SYNE1-227ENST00000489156 USP17L1Q7RTZ2 530 aa19.08■□□□□ 0.65
SYNE1-227ENST00000489156 MXD3Q9BW11 206 aa19.08■□□□□ 0.65
SYNE1-227ENST00000489156 CCDC171Q6TFL3 1326 aa19.08■□□□□ 0.65
SYNE1-227ENST00000489156 FAM205AQ6ZU69 1335 aa19.08■□□□□ 0.65
SYNE1-227ENST00000489156 PSMD14O00487 310 aa19.07■□□□□ 0.64
SYNE1-227ENST00000489156 STRIP1Q5VSL9 837 aa19.07■□□□□ 0.64
SYNE1-227ENST00000489156 MAP4K1Q92918 833 aa19.07■□□□□ 0.64
SYNE1-227ENST00000489156 PDS5AQ29RF7 1337 aaKnown RBP19.07■□□□□ 0.64
SYNE1-227ENST00000489156 EIF6P56537 245 aaKnown RBP19.07■□□□□ 0.64
SYNE1-227ENST00000489156 WDR66Q8TBY9 1149 aa19.07■□□□□ 0.64
SYNE1-227ENST00000489156 ABCF2Q9UG63 623 aa19.07■□□□□ 0.64
SYNE1-227ENST00000489156 RNF113AO15541 343 aaKnown RBP19.06■□□□□ 0.64
SYNE1-227ENST00000489156 MFSD14BQ5SR56 506 aa19.06■□□□□ 0.64
SYNE1-227ENST00000489156 ZMYM1Q5SVZ6 1142 aa19.06■□□□□ 0.64
SYNE1-227ENST00000489156 DACT2Q5SW24 774 aa19.06■□□□□ 0.64
SYNE1-227ENST00000489156 CIAPIN1Q6FI81 312 aa19.06■□□□□ 0.64
SYNE1-227ENST00000489156 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.06■□□□□ 0.64
SYNE1-227ENST00000489156 ZNF541Q9H0D2 1346 aa19.05■□□□□ 0.64
SYNE1-227ENST00000489156 ST18O60284 1047 aa19.05■□□□□ 0.64
SYNE1-227ENST00000489156 CERS5Q8N5B7 392 aa19.05■□□□□ 0.64
SYNE1-227ENST00000489156 PIH1D3Q9NQM4 214 aaKnown RBP19.05■□□□□ 0.64
SYNE1-227ENST00000489156 VIL1P09327 827 aaKnown RBP19.05■□□□□ 0.64
SYNE1-227ENST00000489156 PTH1RQ03431 593 aa19.05■□□□□ 0.64
SYNE1-227ENST00000489156 GRIK5Q16478 980 aa19.05■□□□□ 0.64
SYNE1-227ENST00000489156 ZSCAN25Q6NSZ9 544 aa19.05■□□□□ 0.64
SYNE1-227ENST00000489156 KCNB2Q92953 911 aa19.05■□□□□ 0.64
SYNE1-227ENST00000489156 DOCK2Q92608 1830 aa19.04■□□□□ 0.64
SYNE1-227ENST00000489156 NECTIN1Q15223 517 aa19.04■□□□□ 0.64
SYNE1-227ENST00000489156 TBC1D22AQ8WUA7 517 aa19.04■□□□□ 0.64
SYNE1-227ENST00000489156 PALD1Q9ULE6 856 aa19.04■□□□□ 0.64
SYNE1-227ENST00000489156 ZBTB12Q9Y330 459 aaPredicted RBP19.04■□□□□ 0.64
SYNE1-227ENST00000489156 GJA3Q9Y6H8 435 aa19.04■□□□□ 0.64
SYNE1-227ENST00000489156 MYH7P12883 1935 aa19.04■□□□□ 0.64
SYNE1-227ENST00000489156 SALL1Q9NSC2 1324 aa19.03■□□□□ 0.64
SYNE1-227ENST00000489156 PRDX5P30044 214 aa19.03■□□□□ 0.64
SYNE1-227ENST00000489156 TNIP1Q15025 636 aa19.03■□□□□ 0.64
SYNE1-227ENST00000489156 ZNF589Q86UQ0 364 aaPredicted RBP19.03■□□□□ 0.64
SYNE1-227ENST00000489156 LRP2BPQ9P2M1 347 aa19.03■□□□□ 0.64
SYNE1-227ENST00000489156 RSBN1LQ6PCB5 846 aaPredicted RBP19.03■□□□□ 0.64
SYNE1-227ENST00000489156 K7ELQ4 463 aaPredicted RBP19.02■□□□□ 0.64
SYNE1-227ENST00000489156 IDH1O75874 414 aaKnown RBP19.02■□□□□ 0.64
SYNE1-227ENST00000489156 RNF20Q5VTR2 975 aa19.02■□□□□ 0.64
SYNE1-227ENST00000489156 ZGPATQ8N5A5 531 aaKnown RBP19.02■□□□□ 0.64
SYNE1-227ENST00000489156 RBM8AQ9Y5S9 174 aaKnown RBP19.02■□□□□ 0.64
SYNE1-227ENST00000489156 F8W031 263 aaPredicted RBP19.01■□□□□ 0.63
SYNE1-227ENST00000489156 LDHBP07195 334 aaKnown RBP19.01■□□□□ 0.63
SYNE1-227ENST00000489156 ZKSCAN1P17029 563 aaPredicted RBP19.01■□□□□ 0.63
SYNE1-227ENST00000489156 FKBP1AP62942 108 aaKnown RBP19.01■□□□□ 0.63
SYNE1-227ENST00000489156 RAI14Q9P0K7 980 aa19.01■□□□□ 0.63
SYNE1-227ENST00000489156 SNX14Q9Y5W7 946 aa19.01■□□□□ 0.63
SYNE1-227ENST00000489156 MYH2Q9UKX2 1941 aa19.01■□□□□ 0.63
SYNE1-227ENST00000489156 DDNO94850 711 aaPredicted RBP19.01■□□□□ 0.63
SYNE1-227ENST00000489156 MCM2P49736 904 aa19.01■□□□□ 0.63
SYNE1-227ENST00000489156 KIAA0825Q8IV33 1275 aa19.01■□□□□ 0.63
SYNE1-227ENST00000489156 APPBP2Q92624 585 aa19.01■□□□□ 0.63
SYNE1-227ENST00000489156 CD2BP2O95400 341 aaKnown RBP19■□□□□ 0.63
SYNE1-227ENST00000489156 NEK4P51957 841 aa19■□□□□ 0.63
SYNE1-227ENST00000489156 UBE3CQ15386 1083 aa19■□□□□ 0.63
SYNE1-227ENST00000489156 SPTY2D1Q68D10 685 aaPredicted RBP19■□□□□ 0.63
SYNE1-227ENST00000489156 SEC62Q99442 399 aaKnown RBP19■□□□□ 0.63
SYNE1-227ENST00000489156 GMLQ99445 158 aa19■□□□□ 0.63
SYNE1-227ENST00000489156 DSCC1Q9BVC3 393 aa19■□□□□ 0.63
SYNE1-227ENST00000489156 U3KPZ7 1027 aaPredicted RBP19■□□□□ 0.63
SYNE1-227ENST00000489156 CHGBP05060 677 aa18.99■□□□□ 0.63
SYNE1-227ENST00000489156 TSGA10IPQ3SY00 556 aa18.99■□□□□ 0.63
SYNE1-227ENST00000489156 GPC2Q8N158 579 aa18.99■□□□□ 0.63
SYNE1-227ENST00000489156 TM6SF1Q9BZW5 370 aa18.99■□□□□ 0.63
SYNE1-227ENST00000489156 TTF2Q9UNY4 1162 aaKnown RBP18.99■□□□□ 0.63
SYNE1-227ENST00000489156 MYO3BQ8WXR4 1341 aa18.99■□□□□ 0.63
SYNE1-227ENST00000489156 ZC3H4Q9UPT8 1303 aaKnown RBP18.99■□□□□ 0.63
SYNE1-227ENST00000489156 ADD2P35612 726 aa18.99■□□□□ 0.63
SYNE1-227ENST00000489156 MECOMQ03112 1051 aa18.99■□□□□ 0.63
SYNE1-227ENST00000489156 MAP3K12Q12852 859 aa18.99■□□□□ 0.63
SYNE1-227ENST00000489156 CREB3L3Q68CJ9 461 aa18.99■□□□□ 0.63
SYNE1-227ENST00000489156 DPY19L2Q6NUT2 758 aa18.99■□□□□ 0.63
SYNE1-227ENST00000489156 RASEFQ8IZ41 740 aa18.99■□□□□ 0.63
SYNE1-227ENST00000489156 AGBL3Q8NEM8 1001 aa18.99■□□□□ 0.63
SYNE1-227ENST00000489156 MAST3O60307 1309 aa18.98■□□□□ 0.63
SYNE1-227ENST00000489156 GMPSP49915 693 aaPredicted RBP18.98■□□□□ 0.63
SYNE1-227ENST00000489156 SCNN1DP51172 638 aa18.98■□□□□ 0.63
SYNE1-227ENST00000489156 SLFNL1Q499Z3 407 aa18.98■□□□□ 0.63
SYNE1-227ENST00000489156 SLC9C2Q5TAH2 1124 aa18.98■□□□□ 0.63
SYNE1-227ENST00000489156 DZIP1Q86YF9 867 aaKnown RBP18.98■□□□□ 0.63
SYNE1-227ENST00000489156 ZNF384Q8TF68 577 aa18.98■□□□□ 0.63
SYNE1-227ENST00000489156 OSBP2Q969R2 916 aa18.98■□□□□ 0.63
SYNE1-227ENST00000489156 NSUN4Q96CB9 384 aaKnown RBP18.98■□□□□ 0.63
SYNE1-227ENST00000489156 SUGT1Q9Y2Z0 365 aa18.98■□□□□ 0.63
SYNE1-227ENST00000489156 MAGEB6Q8N7X4 407 aa18.97■□□□□ 0.63
SYNE1-227ENST00000489156 SLC27A2O14975 620 aa18.97■□□□□ 0.63
SYNE1-227ENST00000489156 DIXDC1Q155Q3 683 aa18.97■□□□□ 0.63
SYNE1-227ENST00000489156 CCDC129Q6ZRS4 1044 aa18.97■□□□□ 0.63
SYNE1-227ENST00000489156 ADAMTSL1Q8N6G6 1762 aa18.96■□□□□ 0.63
SYNE1-227ENST00000489156 SHTN1A0MZ66 631 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms