RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 DDX21Q9NR30 783 aaKnown RBP eCLIP8.92□□□□□ -0.98
HDAC3-209ENST00000486618 ALDH1A1P00352 501 aa8.91□□□□□ -0.98
HDAC3-209ENST00000486618 GTF2E1P29083 439 aaPredicted RBP8.91□□□□□ -0.98
HDAC3-209ENST00000486618 SYNE4Q8N205 404 aa8.91□□□□□ -0.98
HDAC3-209ENST00000486618 HPS1Q92902 700 aa8.91□□□□□ -0.98
HDAC3-209ENST00000486618 CAPNS2Q96L46 248 aa8.91□□□□□ -0.98
HDAC3-209ENST00000486618 ADAMTSL1Q8N6G6 1762 aa8.91□□□□□ -0.98
HDAC3-209ENST00000486618 PDE4DIPQ5VU43 2346 aa8.9□□□□□ -0.98
HDAC3-209ENST00000486618 BTBD11A6QL63 1104 aa8.9□□□□□ -0.98
HDAC3-209ENST00000486618 SH3D19Q5HYK7 790 aa8.9□□□□□ -0.98
HDAC3-209ENST00000486618 HELBQ8NG08 1087 aaPredicted RBP8.9□□□□□ -0.98
HDAC3-209ENST00000486618 CCDC136Q96JN2 1154 aa8.9□□□□□ -0.98
HDAC3-209ENST00000486618 GPR101Q96P66 508 aaPredicted RBP8.9□□□□□ -0.98
HDAC3-209ENST00000486618 NIP7Q9Y221 180 aaKnown RBP eCLIP8.9□□□□□ -0.98
HDAC3-209ENST00000486618 GJA3Q9Y6H8 435 aa8.9□□□□□ -0.98
HDAC3-209ENST00000486618 BCORQ6W2J9 1755 aa8.9□□□□□ -0.98
HDAC3-209ENST00000486618 TRPM7Q96QT4 1865 aa8.89□□□□□ -0.99
HDAC3-209ENST00000486618 CLSPNQ9HAW4 1339 aa8.89□□□□□ -0.99
HDAC3-209ENST00000486618 U2SURPO15042 1029 aaKnown RBP8.89□□□□□ -0.99
HDAC3-209ENST00000486618 CA12O43570 354 aa8.89□□□□□ -0.99
HDAC3-209ENST00000486618 SNRPA1P09661 255 aaKnown RBP8.89□□□□□ -0.99
HDAC3-209ENST00000486618 MAP2K2P36507 400 aa8.89□□□□□ -0.99
HDAC3-209ENST00000486618 GRM1Q13255 1194 aa8.89□□□□□ -0.99
HDAC3-209ENST00000486618 SKIV2LQ15477 1246 aaKnown RBP8.89□□□□□ -0.99
HDAC3-209ENST00000486618 USP50Q70EL3 339 aaPredicted RBP8.89□□□□□ -0.99
HDAC3-209ENST00000486618 USP16Q9Y5T5 823 aa8.89□□□□□ -0.99
HDAC3-209ENST00000486618 SIPA1L3O60292 1781 aaPredicted RBP8.89□□□□□ -0.99
HDAC3-209ENST00000486618 FAM177BA6PVY3 158 aa8.88□□□□□ -0.99
HDAC3-209ENST00000486618 NCLP19338 710 aaKnown RBP8.88□□□□□ -0.99
HDAC3-209ENST00000486618 CYP4F22Q6NT55 531 aa8.88□□□□□ -0.99
HDAC3-209ENST00000486618 OLFM4Q6UX06 510 aa8.88□□□□□ -0.99
HDAC3-209ENST00000486618 NYXQ9GZU5 481 aa8.88□□□□□ -0.99
HDAC3-209ENST00000486618 TLL2Q9Y6L7 1015 aa8.88□□□□□ -0.99
HDAC3-209ENST00000486618 CEMIPQ8WUJ3 1361 aa8.87□□□□□ -0.99
HDAC3-209ENST00000486618 CASP8AP2Q9UKL3 1982 aa8.87□□□□□ -0.99
HDAC3-209ENST00000486618 KCNQ3O43525 872 aa8.87□□□□□ -0.99
HDAC3-209ENST00000486618 VARSP26640 1264 aaKnown RBP8.87□□□□□ -0.99
HDAC3-209ENST00000486618 EPS15P42566 896 aa8.87□□□□□ -0.99
HDAC3-209ENST00000486618 PIP4K2AP48426 406 aaPredicted RBP8.87□□□□□ -0.99
HDAC3-209ENST00000486618 SETQ01105 290 aaPredicted RBP8.87□□□□□ -0.99
HDAC3-209ENST00000486618 LARGE2Q8N3Y3 721 aa8.87□□□□□ -0.99
HDAC3-209ENST00000486618 PROCA1Q8NCQ7 364 aaPredicted RBP8.87□□□□□ -0.99
HDAC3-209ENST00000486618 RTF1Q92541 710 aaKnown RBP8.87□□□□□ -0.99
HDAC3-209ENST00000486618 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.87□□□□□ -0.99
HDAC3-209ENST00000486618 TMX4Q9H1E5 349 aaPredicted RBP8.87□□□□□ -0.99
HDAC3-209ENST00000486618 GMPR2Q9P2T1 348 aaKnown RBP8.87□□□□□ -0.99
HDAC3-209ENST00000486618 SCNN1DP51172 638 aa8.86□□□□□ -0.99
HDAC3-209ENST00000486618 CRY2Q49AN0 593 aa8.86□□□□□ -0.99
HDAC3-209ENST00000486618 CC2D1BQ5T0F9 858 aaKnown RBP8.86□□□□□ -0.99
HDAC3-209ENST00000486618 CST9Q5W186 159 aa8.86□□□□□ -0.99
HDAC3-209ENST00000486618 NIM1KQ8IY84 436 aa8.86□□□□□ -0.99
HDAC3-209ENST00000486618 RPGRQ92834 1020 aaKnown RBP8.86□□□□□ -0.99
HDAC3-209ENST00000486618 FOXJ1Q92949 421 aa8.86□□□□□ -0.99
HDAC3-209ENST00000486618 GZF1Q9H116 711 aaPredicted RBP8.86□□□□□ -0.99
HDAC3-209ENST00000486618 THSD7BQ9C0I4 1608 aa8.86□□□□□ -0.99
HDAC3-209ENST00000486618 A0A0U1RQG5 324 aaPredicted RBP8.85□□□□□ -0.99
HDAC3-209ENST00000486618 CTDSPL2Q05D32 466 aa8.85□□□□□ -0.99
HDAC3-209ENST00000486618 ZNF775Q96BV0 537 aaPredicted RBP8.85□□□□□ -0.99
HDAC3-209ENST00000486618 RBM17Q96I25 401 aaKnown RBP8.85□□□□□ -0.99
HDAC3-209ENST00000486618 HHIPL1Q96JK4 782 aa8.85□□□□□ -0.99
HDAC3-209ENST00000486618 MCOLN1Q9GZU1 580 aa8.85□□□□□ -0.99
HDAC3-209ENST00000486618 VPS33BQ9H267 617 aa8.85□□□□□ -0.99
HDAC3-209ENST00000486618 ADARB2Q9NS39 739 aaKnown RBP8.85□□□□□ -0.99
HDAC3-209ENST00000486618 WASF2Q9Y6W5 498 aa8.85□□□□□ -0.99
HDAC3-209ENST00000486618 PRAMEF22A3QJZ6 481 aa8.84□□□□□ -0.99
HDAC3-209ENST00000486618 TRAF5O00463 557 aa8.84□□□□□ -0.99
HDAC3-209ENST00000486618 AOC2O75106 756 aa8.84□□□□□ -0.99
HDAC3-209ENST00000486618 CELF2O95319 508 aaKnown RBP8.84□□□□□ -0.99
HDAC3-209ENST00000486618 HOXA10P31260 410 aaPredicted RBP8.84□□□□□ -0.99
HDAC3-209ENST00000486618 PRKAR2BP31323 418 aa8.84□□□□□ -0.99
HDAC3-209ENST00000486618 FMR1Q06787 632 aaKnown RBP eCLIP8.84□□□□□ -0.99
HDAC3-209ENST00000486618 DGKZQ13574 1117 aa8.84□□□□□ -0.99
HDAC3-209ENST00000486618 HLFQ16534 295 aa8.84□□□□□ -0.99
HDAC3-209ENST00000486618 NBPF10Q6P3W6 841 aaKnown RBP8.84□□□□□ -0.99
HDAC3-209ENST00000486618 SAPCD2Q86UD0 394 aa8.84□□□□□ -0.99
HDAC3-209ENST00000486618 NBPF15Q8N660 670 aa8.84□□□□□ -0.99
HDAC3-209ENST00000486618 CFAP53Q96M91 514 aa8.84□□□□□ -0.99
HDAC3-209ENST00000486618 CRAMP1Q96RY5 1269 aa8.84□□□□□ -0.99
HDAC3-209ENST00000486618 ATP13A2Q9NQ11 1180 aa8.84□□□□□ -0.99
HDAC3-209ENST00000486618 GPRC5DQ9NZD1 345 aa8.84□□□□□ -0.99
HDAC3-209ENST00000486618 NUDCQ9Y266 331 aa8.84□□□□□ -0.99
HDAC3-209ENST00000486618 KIF7Q2M1P5 1343 aa8.83□□□□□ -1
HDAC3-209ENST00000486618 SNED1Q8TER0 1413 aa8.83□□□□□ -1
HDAC3-209ENST00000486618 ERVV-1B6SEH8 477 aa8.83□□□□□ -1
HDAC3-209ENST00000486618 PPIP5K2O43314 1243 aa8.83□□□□□ -1
HDAC3-209ENST00000486618 HTATSF1O43719 755 aaKnown RBP8.83□□□□□ -1
HDAC3-209ENST00000486618 C4orf48Q5BLP8 95 aa8.83□□□□□ -1
HDAC3-209ENST00000486618 PPP2R2DQ66LE6 453 aa8.83□□□□□ -1
HDAC3-209ENST00000486618 MPNDQ8N594 471 aa8.83□□□□□ -1
HDAC3-209ENST00000486618 SUPT20HQ8NEM7 779 aa8.83□□□□□ -1
HDAC3-209ENST00000486618 PHACTR3Q96KR7 559 aa8.83□□□□□ -1
HDAC3-209ENST00000486618 LTBP1Q14766 1721 aa8.83□□□□□ -1
HDAC3-209ENST00000486618 NUP98P52948 1817 aa8.82□□□□□ -1
HDAC3-209ENST00000486618 IRX6P78412 446 aaPredicted RBP8.82□□□□□ -1
HDAC3-209ENST00000486618 NOGQ13253 232 aa8.82□□□□□ -1
HDAC3-209ENST00000486618 AAMPQ13685 434 aa8.82□□□□□ -1
HDAC3-209ENST00000486618 TAF7Q15545 349 aaPredicted RBP8.82□□□□□ -1
HDAC3-209ENST00000486618 TMED8Q6PL24 325 aaPredicted RBP8.82□□□□□ -1
HDAC3-209ENST00000486618 KIF6Q6ZMV9 814 aa8.82□□□□□ -1
HDAC3-209ENST00000486618 CDC37L1Q7L3B6 337 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms