RNA–Protein interactions for RNA: ENST00000479625.1

GPNMB-211, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 788 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-211ENST00000479625 ZNF804BA4D1E1 1349 aa12.53□□□□□ -0.4
GPNMB-211ENST00000479625 PPP1R12BO60237 982 aaPredicted RBP12.52□□□□□ -0.41
GPNMB-211ENST00000479625 IGKV5-2P06315 115 aa12.52□□□□□ -0.41
GPNMB-211ENST00000479625 ELP3Q9H9T3 547 aa12.52□□□□□ -0.41
GPNMB-211ENST00000479625 VEZTQ9HBM0 779 aa12.52□□□□□ -0.41
GPNMB-211ENST00000479625 MAP3K2Q9Y2U5 619 aa12.52□□□□□ -0.41
GPNMB-211ENST00000479625 LAMA3Q16787 3333 aa12.52□□□□□ -0.41
GPNMB-211ENST00000479625 SNAP23O00161 211 aa12.51□□□□□ -0.41
GPNMB-211ENST00000479625 USP2O75604 605 aaPredicted RBP12.51□□□□□ -0.41
GPNMB-211ENST00000479625 CWF19L2Q2TBE0 894 aaKnown RBP12.51□□□□□ -0.41
GPNMB-211ENST00000479625 SLC4A8Q2Y0W8 1093 aa12.51□□□□□ -0.41
GPNMB-211ENST00000479625 OTUD7BQ6GQQ9 843 aa12.51□□□□□ -0.41
GPNMB-211ENST00000479625 POTEGQ6S5H5 508 aa12.51□□□□□ -0.41
GPNMB-211ENST00000479625 CDAN1Q8IWY9 1227 aa12.51□□□□□ -0.41
GPNMB-211ENST00000479625 SH3TC2Q8TF17 1288 aa12.51□□□□□ -0.41
GPNMB-211ENST00000479625 OPTNQ96CV9 577 aa12.51□□□□□ -0.41
GPNMB-211ENST00000479625 JAG2Q9Y219 1238 aa12.51□□□□□ -0.41
GPNMB-211ENST00000479625 LEMD3Q9Y2U8 911 aa12.51□□□□□ -0.41
GPNMB-211ENST00000479625 PPP2R3BQ9Y5P8 575 aa12.51□□□□□ -0.41
GPNMB-211ENST00000479625 MGAMO43451 1857 aa12.51□□□□□ -0.41
GPNMB-211ENST00000479625 TESPA1A2RU30 521 aaPredicted RBP12.5□□□□□ -0.41
GPNMB-211ENST00000479625 MMP14P50281 582 aa12.5□□□□□ -0.41
GPNMB-211ENST00000479625 CFAP100Q494V2 611 aa12.5□□□□□ -0.41
GPNMB-211ENST00000479625 ANKRD13AQ8IZ07 590 aa12.5□□□□□ -0.41
GPNMB-211ENST00000479625 MTMR14Q8NCE2 650 aa12.5□□□□□ -0.41
GPNMB-211ENST00000479625 RUNDC1Q96C34 613 aa12.5□□□□□ -0.41
GPNMB-211ENST00000479625 PRMT6Q96LA8 375 aaPredicted RBP12.5□□□□□ -0.41
GPNMB-211ENST00000479625 ARHGAP39Q9C0H5 1083 aa12.5□□□□□ -0.41
GPNMB-211ENST00000479625 CD209Q9NNX6 404 aa12.5□□□□□ -0.41
GPNMB-211ENST00000479625 IRS2Q9Y4H2 1338 aa12.5□□□□□ -0.41
GPNMB-211ENST00000479625 ALPK3Q96L96 1907 aa12.49□□□□□ -0.41
GPNMB-211ENST00000479625 ZNF853P0CG23 659 aa12.49□□□□□ -0.41
GPNMB-211ENST00000479625 IGHMBP2P38935 993 aaKnown RBP12.49□□□□□ -0.41
GPNMB-211ENST00000479625 KCNJ4P48050 445 aa12.49□□□□□ -0.41
GPNMB-211ENST00000479625 IREB2P48200 963 aaKnown RBP12.49□□□□□ -0.41
GPNMB-211ENST00000479625 RASA3Q14644 834 aa12.49□□□□□ -0.41
GPNMB-211ENST00000479625 TAF1CQ15572 869 aaPredicted RBP12.49□□□□□ -0.41
GPNMB-211ENST00000479625 SUPT20HL1Q3ZLR7 823 aa12.49□□□□□ -0.41
GPNMB-211ENST00000479625 LCE2DQ5TA82 110 aaPredicted RBP12.49□□□□□ -0.41
GPNMB-211ENST00000479625 UBE3BQ7Z3V4 1068 aa12.49□□□□□ -0.41
GPNMB-211ENST00000479625 C8orf58Q8NAV2 365 aa12.49□□□□□ -0.41
GPNMB-211ENST00000479625 BRI3BPQ8WY22 251 aa12.49□□□□□ -0.41
GPNMB-211ENST00000479625 SHISA4Q96DD7 197 aa12.49□□□□□ -0.41
GPNMB-211ENST00000479625 MS4A4AQ96JQ5 239 aa12.49□□□□□ -0.41
GPNMB-211ENST00000479625 RBM27Q9P2N5 1060 aaKnown RBP12.49□□□□□ -0.41
GPNMB-211ENST00000479625 A0A0C4DFX4 3053 aa12.49□□□□□ -0.41
GPNMB-211ENST00000479625 PI4KAP2A4QPH2 592 aa12.48□□□□□ -0.41
GPNMB-211ENST00000479625 MYO1BO43795 1136 aa12.48□□□□□ -0.41
GPNMB-211ENST00000479625 DDX58O95786 925 aaKnown RBP12.48□□□□□ -0.41
GPNMB-211ENST00000479625 ITGA6P23229 1130 aa12.48□□□□□ -0.41
GPNMB-211ENST00000479625 CHRNDQ07001 517 aa12.48□□□□□ -0.41
GPNMB-211ENST00000479625 NBPF11Q86T75 865 aa12.48□□□□□ -0.41
GPNMB-211ENST00000479625 FAM43AQ8N2R8 423 aa12.48□□□□□ -0.41
GPNMB-211ENST00000479625 PI4KAP1Q8N8J0 262 aa12.48□□□□□ -0.41
GPNMB-211ENST00000479625 ANKRD2Q9GZV1 360 aa12.48□□□□□ -0.41
GPNMB-211ENST00000479625 CCL15-CCL14A0A0B4J2E2 113 aa12.47□□□□□ -0.41
GPNMB-211ENST00000479625 UNCXA6NJT0 531 aa12.47□□□□□ -0.41
GPNMB-211ENST00000479625 NEURL1BA8MQ27 555 aa12.47□□□□□ -0.41
GPNMB-211ENST00000479625 DLL1O00548 723 aa12.47□□□□□ -0.41
GPNMB-211ENST00000479625 TAF5LO75529 589 aa12.47□□□□□ -0.41
GPNMB-211ENST00000479625 CCL15Q16663 113 aa12.47□□□□□ -0.41
GPNMB-211ENST00000479625 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.47□□□□□ -0.41
GPNMB-211ENST00000479625 HELBQ8NG08 1087 aaPredicted RBP12.47□□□□□ -0.41
GPNMB-211ENST00000479625 UNC80Q8N2C7 3258 aa12.47□□□□□ -0.41
GPNMB-211ENST00000479625 RBM5P52756 815 aaKnown RBP eCLIP12.46□□□□□ -0.41
GPNMB-211ENST00000479625 VGLL4Q14135 290 aa12.46□□□□□ -0.41
GPNMB-211ENST00000479625 WDR43Q15061 677 aaKnown RBP eCLIP12.46□□□□□ -0.41
GPNMB-211ENST00000479625 KSR2Q6VAB6 950 aa12.46□□□□□ -0.41
GPNMB-211ENST00000479625 MPHOSPH8Q99549 860 aa12.46□□□□□ -0.41
GPNMB-211ENST00000479625 ZFYVE28Q9HCC9 887 aa12.46□□□□□ -0.41
GPNMB-211ENST00000479625 ADAMTS8Q9UP79 889 aa12.46□□□□□ -0.41
GPNMB-211ENST00000479625 MYH13Q9UKX3 1938 aa12.46□□□□□ -0.42
GPNMB-211ENST00000479625 MTFR1Q15390 333 aa12.45□□□□□ -0.42
GPNMB-211ENST00000479625 TSPYL6Q8N831 410 aa12.45□□□□□ -0.42
GPNMB-211ENST00000479625 TEPSINQ96N21 525 aa12.45□□□□□ -0.42
GPNMB-211ENST00000479625 IFT57Q9NWB7 429 aa12.45□□□□□ -0.42
GPNMB-211ENST00000479625 MYBBP1AQ9BQG0 1328 aaKnown RBP12.44□□□□□ -0.42
GPNMB-211ENST00000479625 H7C1W4 665 aa12.44□□□□□ -0.42
GPNMB-211ENST00000479625 IL1R1P14778 569 aa12.44□□□□□ -0.42
GPNMB-211ENST00000479625 CASP7P55210 303 aa12.44□□□□□ -0.42
GPNMB-211ENST00000479625 LACTBP83111 547 aaPredicted RBP12.44□□□□□ -0.42
GPNMB-211ENST00000479625 NEXNQ0ZGT2 675 aa12.44□□□□□ -0.42
GPNMB-211ENST00000479625 RALBP1Q15311 655 aa12.44□□□□□ -0.42
GPNMB-211ENST00000479625 CCDC30Q5VVM6 783 aa12.44□□□□□ -0.42
GPNMB-211ENST00000479625 G2E3Q7L622 706 aa12.44□□□□□ -0.42
GPNMB-211ENST00000479625 DPF3Q92784 378 aa12.44□□□□□ -0.42
GPNMB-211ENST00000479625 TDRD3Q9H7E2 651 aaKnown RBP12.44□□□□□ -0.42
GPNMB-211ENST00000479625 ZNF70Q9UC06 446 aaPredicted RBP12.44□□□□□ -0.42
GPNMB-211ENST00000479625 CACNA1FO60840 1977 aa12.43□□□□□ -0.42
GPNMB-211ENST00000479625 CUL9Q8IWT3 2517 aa12.43□□□□□ -0.42
GPNMB-211ENST00000479625 TCP10L2B9ZVM9 353 aa12.43□□□□□ -0.42
GPNMB-211ENST00000479625 CTGFP29279 349 aa12.43□□□□□ -0.42
GPNMB-211ENST00000479625 GTF2A2P52657 109 aa12.43□□□□□ -0.42
GPNMB-211ENST00000479625 GNAI1P63096 354 aa12.43□□□□□ -0.42
GPNMB-211ENST00000479625 ARHGEF6Q15052 776 aa12.43□□□□□ -0.42
GPNMB-211ENST00000479625 ZNF804AQ7Z570 1209 aa12.43□□□□□ -0.42
GPNMB-211ENST00000479625 SLC17A8Q8NDX2 589 aa12.43□□□□□ -0.42
GPNMB-211ENST00000479625 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.43□□□□□ -0.42
GPNMB-211ENST00000479625 PLA2G12BQ9BX93 195 aa12.43□□□□□ -0.42
GPNMB-211ENST00000479625 TMEM39BQ9GZU3 492 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms