RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 PTPN12Q05209 780 aaKnown RBP8.1□□□□□ -1.11
VPS50-214ENST00000477935 DOC2BQ14184 412 aa8.1□□□□□ -1.11
VPS50-214ENST00000477935 DUOXA2Q1HG44 320 aa8.1□□□□□ -1.11
VPS50-214ENST00000477935 CCDC27Q2M243 656 aa8.1□□□□□ -1.11
VPS50-214ENST00000477935 UBASH3BQ8TF42 649 aa8.1□□□□□ -1.11
VPS50-214ENST00000477935 LDHBP07195 334 aaKnown RBP8.09□□□□□ -1.11
VPS50-214ENST00000477935 ZNF423Q2M1K9 1284 aa8.09□□□□□ -1.11
VPS50-214ENST00000477935 NXPE4Q6UWF7 544 aa8.09□□□□□ -1.11
VPS50-214ENST00000477935 ACAD11Q709F0 780 aa8.09□□□□□ -1.11
VPS50-214ENST00000477935 AGGF1Q8N302 714 aaeCLIP8.09□□□□□ -1.11
VPS50-214ENST00000477935 TPSG1Q9NRR2 321 aa8.09□□□□□ -1.11
VPS50-214ENST00000477935 ZBTB7CA1YPR0 619 aa8.08□□□□□ -1.12
VPS50-214ENST00000477935 FCGRTP55899 365 aa8.08□□□□□ -1.12
VPS50-214ENST00000477935 GSTM4Q03013 218 aa8.08□□□□□ -1.12
VPS50-214ENST00000477935 COL19A1Q14993 1142 aa8.08□□□□□ -1.12
VPS50-214ENST00000477935 DTHD1Q6ZMT9 781 aa8.08□□□□□ -1.12
VPS50-214ENST00000477935 KIAA1211Q6ZU35 1233 aa8.08□□□□□ -1.12
VPS50-214ENST00000477935 FBXO41Q8TF61 875 aa8.08□□□□□ -1.12
VPS50-214ENST00000477935 SSBP4Q9BWG4 385 aaPredicted RBP8.08□□□□□ -1.12
VPS50-214ENST00000477935 EIF4G3O43432 1585 aaKnown RBP8.08□□□□□ -1.12
VPS50-214ENST00000477935 GAPVD1Q14C86 1478 aa8.07□□□□□ -1.12
VPS50-214ENST00000477935 B3GALT4O96024 378 aa8.07□□□□□ -1.12
VPS50-214ENST00000477935 NPAS4Q8IUM7 802 aa8.07□□□□□ -1.12
VPS50-214ENST00000477935 MEGF10Q96KG7 1140 aa8.07□□□□□ -1.12
VPS50-214ENST00000477935 PPP4R2Q9NY27 417 aa8.07□□□□□ -1.12
VPS50-214ENST00000477935 TOPBP1Q92547 1522 aa8.07□□□□□ -1.12
VPS50-214ENST00000477935 CHD1O14646 1710 aa8.06□□□□□ -1.12
VPS50-214ENST00000477935 FURINP09958 794 aa8.06□□□□□ -1.12
VPS50-214ENST00000477935 GLB1P16278 677 aa8.06□□□□□ -1.12
VPS50-214ENST00000477935 EAPPQ56P03 285 aaPredicted RBP8.06□□□□□ -1.12
VPS50-214ENST00000477935 Q6ZS46 218 aa8.06□□□□□ -1.12
VPS50-214ENST00000477935 USP26Q9BXU7 913 aa8.06□□□□□ -1.12
VPS50-214ENST00000477935 OSBPL7Q9BZF2 842 aa8.06□□□□□ -1.12
VPS50-214ENST00000477935 NRSN2Q9GZP1 204 aa8.06□□□□□ -1.12
VPS50-214ENST00000477935 CLASP1Q7Z460 1538 aa8.05□□□□□ -1.12
VPS50-214ENST00000477935 LOC100289279A0A1B0GTE1 492 aa8.05□□□□□ -1.12
VPS50-214ENST00000477935 PRPF40AO75400 957 aaKnown RBP8.05□□□□□ -1.12
VPS50-214ENST00000477935 XRCC5P13010 732 aaKnown RBP8.05□□□□□ -1.12
VPS50-214ENST00000477935 RPS26P11Q5JNZ5 115 aaPredicted RBP8.05□□□□□ -1.12
VPS50-214ENST00000477935 DZIP1LQ8IYY4 767 aaKnown RBP8.05□□□□□ -1.12
VPS50-214ENST00000477935 TP53INP1Q96A56 240 aa8.05□□□□□ -1.12
VPS50-214ENST00000477935 SRCIN1Q9C0H9 1055 aa8.05□□□□□ -1.12
VPS50-214ENST00000477935 SPG7Q9UQ90 795 aa8.05□□□□□ -1.12
VPS50-214ENST00000477935 SYNJ1O43426 1573 aa8.05□□□□□ -1.12
VPS50-214ENST00000477935 EIF4EBP3O60516 100 aaPredicted RBP8.04□□□□□ -1.12
VPS50-214ENST00000477935 FAAP100Q0VG06 881 aa8.04□□□□□ -1.12
VPS50-214ENST00000477935 RSPO4Q2I0M5 234 aaPredicted RBP8.04□□□□□ -1.12
VPS50-214ENST00000477935 C3orf58Q8NDZ4 430 aa8.04□□□□□ -1.12
VPS50-214ENST00000477935 RUSC1Q9BVN2 902 aa8.04□□□□□ -1.12
VPS50-214ENST00000477935 GIPC1O14908 333 aa8.03□□□□□ -1.12
VPS50-214ENST00000477935 ERCC3P19447 782 aa8.03□□□□□ -1.12
VPS50-214ENST00000477935 GSTT1P30711 240 aa8.03□□□□□ -1.12
VPS50-214ENST00000477935 ZNF157P51786 506 aaPredicted RBP8.03□□□□□ -1.12
VPS50-214ENST00000477935 NKAPLQ5M9Q1 402 aa8.03□□□□□ -1.12
VPS50-214ENST00000477935 TRIM56Q9BRZ2 755 aaKnown RBP8.03□□□□□ -1.12
VPS50-214ENST00000477935 RNF208Q9H0X6 261 aa8.03□□□□□ -1.12
VPS50-214ENST00000477935 C12orf49Q9H741 205 aa8.03□□□□□ -1.12
VPS50-214ENST00000477935 ZFYVE1Q9HBF4 777 aa8.03□□□□□ -1.12
VPS50-214ENST00000477935 DLGAP3O95886 979 aa8.02□□□□□ -1.13
VPS50-214ENST00000477935 CYP11A1P05108 521 aa8.02□□□□□ -1.13
VPS50-214ENST00000477935 FGD1P98174 961 aa8.02□□□□□ -1.13
VPS50-214ENST00000477935 DDX54Q8TDD1 881 aaKnown RBP8.02□□□□□ -1.13
VPS50-214ENST00000477935 UBL7Q96S82 380 aaPredicted RBP8.02□□□□□ -1.13
VPS50-214ENST00000477935 TMPRSS13Q9BYE2 586 aa8.02□□□□□ -1.13
VPS50-214ENST00000477935 CEP41Q9BYV8 373 aa8.02□□□□□ -1.13
VPS50-214ENST00000477935 GPN3Q9UHW5 284 aaPredicted RBP8.02□□□□□ -1.13
VPS50-214ENST00000477935 AKAP2Q9Y2D5 859 aa8.02□□□□□ -1.13
VPS50-214ENST00000477935 MEGF11A6BM72 1044 aa8.01□□□□□ -1.13
VPS50-214ENST00000477935 CTSBP07858 339 aa8.01□□□□□ -1.13
VPS50-214ENST00000477935 GNA15P30679 374 aa8.01□□□□□ -1.13
VPS50-214ENST00000477935 POU4F3Q15319 338 aa8.01□□□□□ -1.13
VPS50-214ENST00000477935 TMCO4Q5TGY1 634 aa8.01□□□□□ -1.13
VPS50-214ENST00000477935 FBXO33Q7Z6M2 555 aa8.01□□□□□ -1.13
VPS50-214ENST00000477935 DUSP9Q99956 384 aaKnown RBP8.01□□□□□ -1.13
VPS50-214ENST00000477935 RNF19AQ9NV58 838 aa8.01□□□□□ -1.13
VPS50-214ENST00000477935 TDRD9Q8NDG6 1382 aaKnown RBP8□□□□□ -1.13
VPS50-214ENST00000477935 WIZO95785 1651 aa8□□□□□ -1.13
VPS50-214ENST00000477935 K7ELQ4 463 aaPredicted RBP8□□□□□ -1.13
VPS50-214ENST00000477935 ADAM23O75077 832 aa8□□□□□ -1.13
VPS50-214ENST00000477935 ECEL1O95672 775 aa8□□□□□ -1.13
VPS50-214ENST00000477935 MAOBP27338 520 aa8□□□□□ -1.13
VPS50-214ENST00000477935 AP3B2Q13367 1082 aa8□□□□□ -1.13
VPS50-214ENST00000477935 ANKRD34AQ69YU3 496 aa8□□□□□ -1.13
VPS50-214ENST00000477935 FRMD6Q96NE9 622 aa8□□□□□ -1.13
VPS50-214ENST00000477935 FAM8A1Q9UBU6 413 aa8□□□□□ -1.13
VPS50-214ENST00000477935 MAGI1Q96QZ7 1491 aaPredicted RBP8□□□□□ -1.13
VPS50-214ENST00000477935 DYRK3O43781 588 aa7.99□□□□□ -1.13
VPS50-214ENST00000477935 H2AFB1P0C5Y9 115 aa7.99□□□□□ -1.13
VPS50-214ENST00000477935 H2AFB2P0C5Z0 115 aa7.99□□□□□ -1.13
VPS50-214ENST00000477935 PREPP48147 710 aa7.99□□□□□ -1.13
VPS50-214ENST00000477935 EXOSC6Q5RKV6 272 aaKnown RBP7.99□□□□□ -1.13
VPS50-214ENST00000477935 NUTM2GQ5VZR2 741 aa7.99□□□□□ -1.13
VPS50-214ENST00000477935 FDX2Q6P4F2 183 aa7.99□□□□□ -1.13
VPS50-214ENST00000477935 CORO1BQ9BR76 489 aa7.99□□□□□ -1.13
VPS50-214ENST00000477935 SUGCTQ9HAC7 445 aa7.99□□□□□ -1.13
VPS50-214ENST00000477935 TMEM39AQ9NV64 488 aa7.99□□□□□ -1.13
VPS50-214ENST00000477935 TARBP1Q13395 1621 aaKnown RBP7.99□□□□□ -1.13
VPS50-214ENST00000477935 ERCC6L2Q5T890 1561 aa7.98□□□□□ -1.13
VPS50-214ENST00000477935 SOGA1O94964 1423 aa7.98□□□□□ -1.13
VPS50-214ENST00000477935 USP17L7P0C7H9 530 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms