RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 SRGAP3O43295 1099 aa14.99□□□□□ -0.01
SYNE1-223ENST00000476519 RASA3Q14644 834 aa14.99□□□□□ -0.01
SYNE1-223ENST00000476519 MAP3K11Q16584 847 aa14.99□□□□□ -0.01
SYNE1-223ENST00000476519 ATP2B3Q16720 1220 aa14.99□□□□□ -0.01
SYNE1-223ENST00000476519 RNF186Q9NXI6 227 aa14.99□□□□□ -0.01
SYNE1-223ENST00000476519 ZNF70Q9UC06 446 aaPredicted RBP14.99□□□□□ -0.01
SYNE1-223ENST00000476519 TEKT1Q969V4 418 aa14.98□□□□□ -0.01
SYNE1-223ENST00000476519 ZDHHC15Q96MV8 337 aa14.98□□□□□ -0.01
SYNE1-223ENST00000476519 TSKSQ9UJT2 592 aa14.98□□□□□ -0.01
SYNE1-223ENST00000476519 ANGEL1Q9UNK9 670 aaKnown RBP14.98□□□□□ -0.01
SYNE1-223ENST00000476519 PA2G4Q9UQ80 394 aaKnown RBP14.98□□□□□ -0.01
SYNE1-223ENST00000476519 MAST3O60307 1309 aa14.97□□□□□ -0.01
SYNE1-223ENST00000476519 ZBED9Q6R2W3 1325 aa14.97□□□□□ -0.01
SYNE1-223ENST00000476519 SEMA3EO15041 775 aa14.97□□□□□ -0.01
SYNE1-223ENST00000476519 TM4SF4P48230 202 aa14.97□□□□□ -0.01
SYNE1-223ENST00000476519 TNNI2P48788 182 aa14.97□□□□□ -0.01
SYNE1-223ENST00000476519 GRIK5Q16478 980 aa14.97□□□□□ -0.01
SYNE1-223ENST00000476519 HHIPL2Q6UWX4 724 aa14.97□□□□□ -0.01
SYNE1-223ENST00000476519 CLUAP1Q96AJ1 413 aa14.97□□□□□ -0.01
SYNE1-223ENST00000476519 SLC10A4Q96EP9 437 aa14.97□□□□□ -0.01
SYNE1-223ENST00000476519 TDRD3Q9H7E2 651 aaKnown RBP14.97□□□□□ -0.01
SYNE1-223ENST00000476519 AKAP2Q9Y2D5 859 aa14.97□□□□□ -0.01
SYNE1-223ENST00000476519 AOX1Q06278 1338 aa14.96□□□□□ -0.01
SYNE1-223ENST00000476519 PAPPA2Q9BXP8 1791 aa14.96□□□□□ -0.01
SYNE1-223ENST00000476519 TRPA1O75762 1119 aa14.96□□□□□ -0.01
SYNE1-223ENST00000476519 PRKG1Q13976 671 aa14.96□□□□□ -0.01
SYNE1-223ENST00000476519 NBPF12Q5TAG4 269 aaPredicted RBP14.96□□□□□ -0.01
SYNE1-223ENST00000476519 FKBP1CQ5VVH2 108 aa14.96□□□□□ -0.01
SYNE1-223ENST00000476519 DENND2AQ9ULE3 1009 aa14.96□□□□□ -0.01
SYNE1-223ENST00000476519 ZNF646O15015 1829 aaPredicted RBP14.96□□□□□ -0.01
SYNE1-223ENST00000476519 CAPN15O75808 1086 aa14.95□□□□□ -0.02
SYNE1-223ENST00000476519 IREB2P48200 963 aaKnown RBP14.95□□□□□ -0.02
SYNE1-223ENST00000476519 INHBEP58166 350 aa14.95□□□□□ -0.02
SYNE1-223ENST00000476519 SPRYD7Q5W111 196 aa14.95□□□□□ -0.02
SYNE1-223ENST00000476519 APOBEC3HQ6NTF7 200 aaKnown RBP14.95□□□□□ -0.02
SYNE1-223ENST00000476519 TMEM57Q8N5G2 664 aa14.95□□□□□ -0.02
SYNE1-223ENST00000476519 USP2O75604 605 aaPredicted RBP14.94□□□□□ -0.02
SYNE1-223ENST00000476519 TIMM10P62072 90 aa14.94□□□□□ -0.02
SYNE1-223ENST00000476519 SREBF2Q12772 1141 aa14.94□□□□□ -0.02
SYNE1-223ENST00000476519 TNNQ9UQP3 1299 aa14.94□□□□□ -0.02
SYNE1-223ENST00000476519 SALL1Q9NSC2 1324 aa14.93□□□□□ -0.02
SYNE1-223ENST00000476519 TCP10L2B9ZVM9 353 aa14.93□□□□□ -0.02
SYNE1-223ENST00000476519 ZBTB48P10074 688 aaPredicted RBP14.93□□□□□ -0.02
SYNE1-223ENST00000476519 PHKA1P46020 1223 aa14.93□□□□□ -0.02
SYNE1-223ENST00000476519 G3BP1Q13283 466 aaKnown RBP eCLIP14.93□□□□□ -0.02
SYNE1-223ENST00000476519 CCDC102BQ68D86 513 aa14.93□□□□□ -0.02
SYNE1-223ENST00000476519 FAM83AQ86UY5 434 aa14.93□□□□□ -0.02
SYNE1-223ENST00000476519 FTSJ3Q8IY81 847 aaKnown RBP14.93□□□□□ -0.02
SYNE1-223ENST00000476519 ANKRD13AQ8IZ07 590 aa14.93□□□□□ -0.02
SYNE1-223ENST00000476519 ZGPATQ8N5A5 531 aaKnown RBP14.93□□□□□ -0.02
SYNE1-223ENST00000476519 TEPSINQ96N21 525 aa14.93□□□□□ -0.02
SYNE1-223ENST00000476519 TMOD2Q9NZR1 351 aa14.93□□□□□ -0.02
SYNE1-223ENST00000476519 A0A1B0GUL6 1792 aa14.93□□□□□ -0.02
SYNE1-223ENST00000476519 A0A1B0GUL7 405 aa14.92□□□□□ -0.02
SYNE1-223ENST00000476519 MANSC4A6NHS7 340 aaPredicted RBP14.92□□□□□ -0.02
SYNE1-223ENST00000476519 LDHBP07195 334 aaKnown RBP14.92□□□□□ -0.02
SYNE1-223ENST00000476519 TFCP2Q12800 502 aa14.92□□□□□ -0.02
SYNE1-223ENST00000476519 MVPQ14764 893 aaKnown RBP14.92□□□□□ -0.02
SYNE1-223ENST00000476519 HOOK2Q96ED9 719 aa14.92□□□□□ -0.02
SYNE1-223ENST00000476519 XAGE2Q96GT9 111 aa14.92□□□□□ -0.02
SYNE1-223ENST00000476519 ABHD8Q96I13 439 aa14.92□□□□□ -0.02
SYNE1-223ENST00000476519 FZD1Q9UP38 647 aa14.92□□□□□ -0.02
SYNE1-223ENST00000476519 PDS5AQ29RF7 1337 aaKnown RBP14.92□□□□□ -0.02
SYNE1-223ENST00000476519 PNMA6EA0A0J9YXQ4 647 aa14.91□□□□□ -0.02
SYNE1-223ENST00000476519 ZBTB7BO15156 539 aaPredicted RBP14.91□□□□□ -0.02
SYNE1-223ENST00000476519 ALDH1A1P00352 501 aa14.91□□□□□ -0.02
SYNE1-223ENST00000476519 ADORA1P30542 326 aa14.91□□□□□ -0.02
SYNE1-223ENST00000476519 ATP8B2P98198 1209 aa14.91□□□□□ -0.02
SYNE1-223ENST00000476519 NOM1Q5C9Z4 860 aaKnown RBP14.91□□□□□ -0.02
SYNE1-223ENST00000476519 TMEM39BQ9GZU3 492 aa14.91□□□□□ -0.02
SYNE1-223ENST00000476519 MS4A1P11836 297 aa14.9□□□□□ -0.02
SYNE1-223ENST00000476519 MAP3K9P80192 1104 aa14.9□□□□□ -0.02
SYNE1-223ENST00000476519 MKRN3Q13064 507 aaKnown RBP14.9□□□□□ -0.02
SYNE1-223ENST00000476519 POLA2Q14181 598 aa14.9□□□□□ -0.02
SYNE1-223ENST00000476519 SPTY2D1Q68D10 685 aaPredicted RBP14.9□□□□□ -0.02
SYNE1-223ENST00000476519 SSH3Q8TE77 659 aa14.9□□□□□ -0.02
SYNE1-223ENST00000476519 WNK4Q96J92 1243 aa14.9□□□□□ -0.02
SYNE1-223ENST00000476519 CLMNQ96JQ2 1002 aa14.9□□□□□ -0.02
SYNE1-223ENST00000476519 NEUROD6Q96NK8 337 aa14.9□□□□□ -0.02
SYNE1-223ENST00000476519 CFHR5Q9BXR6 569 aa14.9□□□□□ -0.02
SYNE1-223ENST00000476519 PRDX5P30044 214 aa14.89□□□□□ -0.03
SYNE1-223ENST00000476519 RASGRF1Q13972 1273 aa14.89□□□□□ -0.03
SYNE1-223ENST00000476519 ITPRIPQ8IWB1 547 aa14.89□□□□□ -0.03
SYNE1-223ENST00000476519 SLF2Q8IX21 1173 aa14.89□□□□□ -0.03
SYNE1-223ENST00000476519 FAM163AQ96GL9 167 aaPredicted RBP14.89□□□□□ -0.03
SYNE1-223ENST00000476519 MCOLN1Q9GZU1 580 aa14.89□□□□□ -0.03
SYNE1-223ENST00000476519 GPR108Q9NPR9 543 aa14.89□□□□□ -0.03
SYNE1-223ENST00000476519 DAGLAQ9Y4D2 1042 aa14.89□□□□□ -0.03
SYNE1-223ENST00000476519 SSC5DA1L4H1 1573 aa14.89□□□□□ -0.03
SYNE1-223ENST00000476519 CACNB3P54284 484 aa14.88□□□□□ -0.03
SYNE1-223ENST00000476519 DGKZQ13574 1117 aa14.88□□□□□ -0.03
SYNE1-223ENST00000476519 DIXDC1Q155Q3 683 aa14.88□□□□□ -0.03
SYNE1-223ENST00000476519 GORABQ5T7V8 394 aa14.88□□□□□ -0.03
SYNE1-223ENST00000476519 OTUD7BQ6GQQ9 843 aa14.88□□□□□ -0.03
SYNE1-223ENST00000476519 CDC42EP5Q6NZY7 148 aa14.88□□□□□ -0.03
SYNE1-223ENST00000476519 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.88□□□□□ -0.03
SYNE1-223ENST00000476519 CDAN1Q8IWY9 1227 aa14.88□□□□□ -0.03
SYNE1-223ENST00000476519 FAM151AQ8WW52 585 aa14.88□□□□□ -0.03
SYNE1-223ENST00000476519 NOP58Q9Y2X3 529 aaKnown RBP14.88□□□□□ -0.03
SYNE1-223ENST00000476519 TESPA1A2RU30 521 aaPredicted RBP14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms