RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 NBPF3Q9H094 633 aa9.74□□□□□ -0.85
VAPB-205ENST00000476395 ATG3Q9NT62 314 aa9.74□□□□□ -0.85
VAPB-205ENST00000476395 HPS5Q9UPZ3 1129 aa9.74□□□□□ -0.85
VAPB-205ENST00000476395 HSPD1P10809 573 aaKnown RBP9.74□□□□□ -0.85
VAPB-205ENST00000476395 OAS2P29728 719 aaKnown RBP9.74□□□□□ -0.85
VAPB-205ENST00000476395 LRRC24Q50LG9 513 aa9.74□□□□□ -0.85
VAPB-205ENST00000476395 E4F1Q66K89 784 aaPredicted RBP9.74□□□□□ -0.85
VAPB-205ENST00000476395 TTLL5Q6EMB2 1281 aa9.74□□□□□ -0.85
VAPB-205ENST00000476395 FBXL16Q8N461 479 aa9.74□□□□□ -0.85
VAPB-205ENST00000476395 ABCA3Q99758 1704 aa9.73□□□□□ -0.85
VAPB-205ENST00000476395 PTPDC1A2A3K4 754 aa9.73□□□□□ -0.85
VAPB-205ENST00000476395 E7EWF7 191 aa9.73□□□□□ -0.85
VAPB-205ENST00000476395 DDX58O95786 925 aaKnown RBP9.73□□□□□ -0.85
VAPB-205ENST00000476395 PDIA3P30101 505 aaKnown RBP9.73□□□□□ -0.85
VAPB-205ENST00000476395 MMP14P50281 582 aa9.73□□□□□ -0.85
VAPB-205ENST00000476395 FOSBP53539 338 aa9.73□□□□□ -0.85
VAPB-205ENST00000476395 RNF20Q5VTR2 975 aa9.73□□□□□ -0.85
VAPB-205ENST00000476395 NAA16Q6N069 864 aaPredicted RBP9.73□□□□□ -0.85
VAPB-205ENST00000476395 FMR1NBQ8N0W7 255 aaPredicted RBP9.73□□□□□ -0.85
VAPB-205ENST00000476395 FAM177A1Q8N128 213 aaPredicted RBP9.73□□□□□ -0.85
VAPB-205ENST00000476395 CARMIL3Q8ND23 1372 aa9.73□□□□□ -0.85
VAPB-205ENST00000476395 CHST3Q7LGC8 479 aa9.73□□□□□ -0.85
VAPB-205ENST00000476395 PLEKHA4Q9H4M7 779 aa9.73□□□□□ -0.85
VAPB-205ENST00000476395 GJB4Q9NTQ9 266 aa9.73□□□□□ -0.85
VAPB-205ENST00000476395 DENND2AQ9ULE3 1009 aa9.73□□□□□ -0.85
VAPB-205ENST00000476395 LRP6O75581 1613 aa9.73□□□□□ -0.85
VAPB-205ENST00000476395 ZRANB2O95218 330 aaKnown RBP eCLIP9.73□□□□□ -0.85
VAPB-205ENST00000476395 GTF2A1P52655 376 aaPredicted RBP9.73□□□□□ -0.85
VAPB-205ENST00000476395 ZC3H6P61129 1189 aaKnown RBP9.73□□□□□ -0.85
VAPB-205ENST00000476395 TIMM10P62072 90 aa9.73□□□□□ -0.85
VAPB-205ENST00000476395 REXO1L1PQ8IX06 675 aa9.73□□□□□ -0.85
VAPB-205ENST00000476395 DRC1Q96MC2 740 aa9.73□□□□□ -0.85
VAPB-205ENST00000476395 LLPHQ9BRT6 129 aaKnown RBP9.73□□□□□ -0.85
VAPB-205ENST00000476395 C19orf44Q9H6X5 657 aa9.73□□□□□ -0.85
VAPB-205ENST00000476395 KCND1Q9NSA2 647 aa9.73□□□□□ -0.85
VAPB-205ENST00000476395 U3KPZ7 1027 aaPredicted RBP9.73□□□□□ -0.85
VAPB-205ENST00000476395 SLIT2O94813 1529 aa9.72□□□□□ -0.85
VAPB-205ENST00000476395 ANTXR2P58335 489 aa9.72□□□□□ -0.85
VAPB-205ENST00000476395 GOLGA8FQ08AF8 430 aa9.72□□□□□ -0.85
VAPB-205ENST00000476395 GOLGA8DPQ0D2H9 430 aa9.72□□□□□ -0.85
VAPB-205ENST00000476395 E2F4Q16254 413 aa9.72□□□□□ -0.85
VAPB-205ENST00000476395 LMBR1LQ6UX01 489 aa9.72□□□□□ -0.85
VAPB-205ENST00000476395 TTLL7Q6ZT98 887 aa9.72□□□□□ -0.85
VAPB-205ENST00000476395 DHX32Q7L7V1 743 aaKnown RBP9.72□□□□□ -0.85
VAPB-205ENST00000476395 KRT28Q7Z3Y7 464 aa9.72□□□□□ -0.85
VAPB-205ENST00000476395 OSBP2Q969R2 916 aa9.72□□□□□ -0.85
VAPB-205ENST00000476395 PUS3Q9BZE2 481 aaKnown RBP9.72□□□□□ -0.85
VAPB-205ENST00000476395 TNS2Q63HR2 1409 aa9.72□□□□□ -0.85
VAPB-205ENST00000476395 KIF28PB7ZC32 967 aa9.72□□□□□ -0.85
VAPB-205ENST00000476395 RAD21O60216 631 aa9.72□□□□□ -0.85
VAPB-205ENST00000476395 BICD2Q8TD16 824 aa9.72□□□□□ -0.85
VAPB-205ENST00000476395 MRFAP1L1Q96HT8 127 aa9.72□□□□□ -0.85
VAPB-205ENST00000476395 ZNF594Q96JF6 807 aaPredicted RBP9.72□□□□□ -0.85
VAPB-205ENST00000476395 DSCC1Q9BVC3 393 aa9.72□□□□□ -0.85
VAPB-205ENST00000476395 DOCK2Q92608 1830 aa9.72□□□□□ -0.85
VAPB-205ENST00000476395 ARAP2Q8WZ64 1704 aa9.72□□□□□ -0.85
VAPB-205ENST00000476395 LMAN1P49257 510 aa9.71□□□□□ -0.85
VAPB-205ENST00000476395 SCARF1Q14162 830 aa9.71□□□□□ -0.85
VAPB-205ENST00000476395 KRT32Q14532 448 aa9.71□□□□□ -0.85
VAPB-205ENST00000476395 PACS2Q86VP3 889 aa9.71□□□□□ -0.85
VAPB-205ENST00000476395 CCAR1Q8IX12 1150 aaKnown RBP9.71□□□□□ -0.85
VAPB-205ENST00000476395 PPP1R13BQ96KQ4 1090 aa9.71□□□□□ -0.85
VAPB-205ENST00000476395 ZSCAN16Q9H4T2 348 aaPredicted RBP9.71□□□□□ -0.85
VAPB-205ENST00000476395 PCDHA7Q9UN72 937 aa9.71□□□□□ -0.85
VAPB-205ENST00000476395 A0A087WZG4 1122 aa9.71□□□□□ -0.85
VAPB-205ENST00000476395 CCT2P78371 535 aaKnown RBP9.71□□□□□ -0.85
VAPB-205ENST00000476395 NCAPHQ15003 741 aa9.71□□□□□ -0.85
VAPB-205ENST00000476395 SKIDA1Q1XH10 827 aa9.71□□□□□ -0.85
VAPB-205ENST00000476395 PAG1Q9NWQ8 432 aa9.71□□□□□ -0.85
VAPB-205ENST00000476395 RIC1Q4ADV7 1423 aa9.71□□□□□ -0.85
VAPB-205ENST00000476395 PLEKHG2Q9H7P9 1386 aa9.71□□□□□ -0.86
VAPB-205ENST00000476395 MROH7-TTC4A0A0A0MT08 1334 aa9.71□□□□□ -0.86
VAPB-205ENST00000476395 GOLGA6L4A6NEF3 574 aa9.71□□□□□ -0.86
VAPB-205ENST00000476395 GOLIM4O00461 696 aa9.71□□□□□ -0.86
VAPB-205ENST00000476395 SNRPA1P09661 255 aaKnown RBP9.71□□□□□ -0.86
VAPB-205ENST00000476395 ATF3P18847 181 aa9.71□□□□□ -0.86
VAPB-205ENST00000476395 OTUD7BQ6GQQ9 843 aa9.71□□□□□ -0.86
VAPB-205ENST00000476395 PLBD2Q8NHP8 589 aa9.71□□□□□ -0.86
VAPB-205ENST00000476395 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.71□□□□□ -0.862e-8■□□□□ 10.4
VAPB-205ENST00000476395 CHD4Q14839 1912 aa9.71□□□□□ -0.86
VAPB-205ENST00000476395 H3BQF6 201 aa9.7□□□□□ -0.86
VAPB-205ENST00000476395 MAFGO15525 162 aa9.7□□□□□ -0.86
VAPB-205ENST00000476395 TBC1D8O95759 1140 aa9.7□□□□□ -0.86
VAPB-205ENST00000476395 CASQ1P31415 396 aa9.7□□□□□ -0.86
VAPB-205ENST00000476395 HELLSQ9NRZ9 838 aa9.7□□□□□ -0.86
VAPB-205ENST00000476395 DNAI1Q9UI46 699 aa9.7□□□□□ -0.86
VAPB-205ENST00000476395 RRP15Q9Y3B9 282 aaKnown RBP9.7□□□□□ -0.86
VAPB-205ENST00000476395 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.7□□□□□ -0.864e-13■□□□□ 9.8
VAPB-205ENST00000476395 CLIC4Q9Y696 253 aa9.7□□□□□ -0.86
VAPB-205ENST00000476395 CCDC93Q567U6 631 aa9.7□□□□□ -0.86
VAPB-205ENST00000476395 ORC3Q9UBD5 711 aaPredicted RBP9.7□□□□□ -0.86
VAPB-205ENST00000476395 ANKRD36CQ5JPF3 1778 aa9.7□□□□□ -0.86
VAPB-205ENST00000476395 NDUFA8P51970 172 aa9.7□□□□□ -0.86
VAPB-205ENST00000476395 TMCO3Q6UWJ1 677 aa9.7□□□□□ -0.86
VAPB-205ENST00000476395 SRLQ86TD4 932 aa9.7□□□□□ -0.86
VAPB-205ENST00000476395 CARD6Q9BX69 1037 aa9.7□□□□□ -0.86
VAPB-205ENST00000476395 L2HGDHQ9H9P8 463 aa9.7□□□□□ -0.86
VAPB-205ENST00000476395 TACC3Q9Y6A5 838 aa9.7□□□□□ -0.86
VAPB-205ENST00000476395 COL4A1P02462 1669 aa9.7□□□□□ -0.86
VAPB-205ENST00000476395 LRP5O75197 1615 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms