RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 MYH13Q9UKX3 1938 aa8.62□□□□□ -1.03
LIMD1-204ENST00000474665 GPR25O00155 361 aa8.62□□□□□ -1.03
LIMD1-204ENST00000474665 PSMD14O00487 310 aa8.62□□□□□ -1.03
LIMD1-204ENST00000474665 RAD17O75943 681 aa8.62□□□□□ -1.03
LIMD1-204ENST00000474665 SLC5A1P13866 664 aa8.62□□□□□ -1.03
LIMD1-204ENST00000474665 PHKA1P46020 1223 aa8.62□□□□□ -1.03
LIMD1-204ENST00000474665 OS9Q13438 667 aaPredicted RBP8.62□□□□□ -1.03
LIMD1-204ENST00000474665 NIM1KQ8IY84 436 aa8.62□□□□□ -1.03
LIMD1-204ENST00000474665 CERS5Q8N5B7 392 aa8.62□□□□□ -1.03
LIMD1-204ENST00000474665 TRPM4Q8TD43 1214 aa8.62□□□□□ -1.03
LIMD1-204ENST00000474665 XAGE2Q96GT9 111 aa8.62□□□□□ -1.03
LIMD1-204ENST00000474665 DBNDD2Q9BQY9 259 aa8.62□□□□□ -1.03
LIMD1-204ENST00000474665 MXD3Q9BW11 206 aa8.62□□□□□ -1.03
LIMD1-204ENST00000474665 COA1Q9GZY4 146 aa8.62□□□□□ -1.03
LIMD1-204ENST00000474665 PAPPA2Q9BXP8 1791 aa8.61□□□□□ -1.03
LIMD1-204ENST00000474665 POLR2AP24928 1970 aaKnown RBP8.61□□□□□ -1.03
LIMD1-204ENST00000474665 SHTN1A0MZ66 631 aa8.61□□□□□ -1.03
LIMD1-204ENST00000474665 RAB11FIP3O75154 756 aa8.61□□□□□ -1.03
LIMD1-204ENST00000474665 HIBADHP31937 336 aaKnown RBP8.61□□□□□ -1.03
LIMD1-204ENST00000474665 GMPSP49915 693 aaPredicted RBP8.61□□□□□ -1.03
LIMD1-204ENST00000474665 SCARF1Q14162 830 aa8.61□□□□□ -1.03
LIMD1-204ENST00000474665 GRIK5Q16478 980 aa8.61□□□□□ -1.03
LIMD1-204ENST00000474665 HSP90AB4PQ58FF6 505 aa8.61□□□□□ -1.03
LIMD1-204ENST00000474665 DACT2Q5SW24 774 aa8.61□□□□□ -1.03
LIMD1-204ENST00000474665 CCDC102BQ68D86 513 aa8.61□□□□□ -1.03
LIMD1-204ENST00000474665 PODNQ7Z5L7 613 aa8.61□□□□□ -1.03
LIMD1-204ENST00000474665 OTUD7AQ8TE49 926 aaPredicted RBP8.61□□□□□ -1.03
LIMD1-204ENST00000474665 ZC3H15Q8WU90 426 aaKnown RBP8.61□□□□□ -1.03
LIMD1-204ENST00000474665 KIF1BPQ96EK5 621 aa8.61□□□□□ -1.03
LIMD1-204ENST00000474665 GMLQ99445 158 aa8.61□□□□□ -1.03
LIMD1-204ENST00000474665 CCDC8Q9H0W5 538 aaPredicted RBP8.61□□□□□ -1.03
LIMD1-204ENST00000474665 IQSEC3Q9UPP2 1182 aaPredicted RBP8.61□□□□□ -1.03
LIMD1-204ENST00000474665 JAG2Q9Y219 1238 aa8.61□□□□□ -1.03
LIMD1-204ENST00000474665 AKAP2Q9Y2D5 859 aa8.61□□□□□ -1.03
LIMD1-204ENST00000474665 FAM205AQ6ZU69 1335 aa8.6□□□□□ -1.03
LIMD1-204ENST00000474665 SOX1O00570 391 aaPredicted RBP8.6□□□□□ -1.03
LIMD1-204ENST00000474665 ZBTB22O15209 634 aa8.6□□□□□ -1.03
LIMD1-204ENST00000474665 VIL1P09327 827 aaKnown RBP8.6□□□□□ -1.03
LIMD1-204ENST00000474665 IFIT1P09914 478 aaKnown RBP8.6□□□□□ -1.03
LIMD1-204ENST00000474665 RASGRF1Q13972 1273 aa8.6□□□□□ -1.03
LIMD1-204ENST00000474665 PI16Q6UXB8 463 aa8.6□□□□□ -1.03
LIMD1-204ENST00000474665 ZNF804AQ7Z570 1209 aa8.6□□□□□ -1.03
LIMD1-204ENST00000474665 AACSQ86V21 672 aa8.6□□□□□ -1.03
LIMD1-204ENST00000474665 ERC1Q8IUD2 1116 aa8.6□□□□□ -1.03
LIMD1-204ENST00000474665 LRCH3Q96II8 777 aa8.6□□□□□ -1.03
LIMD1-204ENST00000474665 NEUROD6Q96NK8 337 aa8.6□□□□□ -1.03
LIMD1-204ENST00000474665 LRRCC1Q9C099 1032 aa8.6□□□□□ -1.03
LIMD1-204ENST00000474665 R3HDMLQ9H3Y0 253 aa8.6□□□□□ -1.03
LIMD1-204ENST00000474665 RWDD1Q9H446 243 aaPredicted RBP8.6□□□□□ -1.03
LIMD1-204ENST00000474665 ZBTB12Q9Y330 459 aaPredicted RBP8.6□□□□□ -1.03
LIMD1-204ENST00000474665 SALL3Q9BXA9 1300 aa8.59□□□□□ -1.03
LIMD1-204ENST00000474665 USP17L3A6NCW0 530 aa8.59□□□□□ -1.03
LIMD1-204ENST00000474665 USP17L4A6NCW7 530 aa8.59□□□□□ -1.03
LIMD1-204ENST00000474665 FKTNO75072 461 aa8.59□□□□□ -1.03
LIMD1-204ENST00000474665 MCAMP43121 646 aa8.59□□□□□ -1.03
LIMD1-204ENST00000474665 GTF2IP78347 998 aa8.59□□□□□ -1.03
LIMD1-204ENST00000474665 TTLL5Q6EMB2 1281 aa8.59□□□□□ -1.03
LIMD1-204ENST00000474665 USP17L1Q7RTZ2 530 aa8.59□□□□□ -1.03
LIMD1-204ENST00000474665 RASAL3Q86YV0 1011 aa8.59□□□□□ -1.03
LIMD1-204ENST00000474665 PRDM6Q9NQX0 595 aa8.59□□□□□ -1.03
LIMD1-204ENST00000474665 ADM5C9JUS6 153 aa8.58□□□□□ -1.04
LIMD1-204ENST00000474665 EGFRP00533 1210 aa8.58□□□□□ -1.04
LIMD1-204ENST00000474665 ARID4AP29374 1257 aaPredicted RBP8.58□□□□□ -1.04
LIMD1-204ENST00000474665 NUCB1Q02818 461 aa8.58□□□□□ -1.04
LIMD1-204ENST00000474665 CAVIN4Q5BKX8 364 aa8.58□□□□□ -1.04
LIMD1-204ENST00000474665 ANKRD45Q5TZF3 282 aa8.58□□□□□ -1.04
LIMD1-204ENST00000474665 STRIP1Q5VSL9 837 aa8.58□□□□□ -1.04
LIMD1-204ENST00000474665 TSHZ3Q63HK5 1081 aa8.58□□□□□ -1.04
LIMD1-204ENST00000474665 RSBN1LQ6PCB5 846 aaPredicted RBP8.58□□□□□ -1.04
LIMD1-204ENST00000474665 KRT26Q7Z3Y9 468 aa8.58□□□□□ -1.04
LIMD1-204ENST00000474665 REM2Q8IYK8 340 aaPredicted RBP8.58□□□□□ -1.04
LIMD1-204ENST00000474665 CLASRPQ8N2M8 674 aaKnown RBP8.58□□□□□ -1.04
LIMD1-204ENST00000474665 ZNF512BQ96KM6 892 aaPredicted RBP8.58□□□□□ -1.04
LIMD1-204ENST00000474665 HMG20BQ9P0W2 317 aa8.58□□□□□ -1.04
LIMD1-204ENST00000474665 TRIM17Q9Y577 477 aa8.58□□□□□ -1.04
LIMD1-204ENST00000474665 NDUFB9Q9Y6M9 179 aa8.58□□□□□ -1.04
LIMD1-204ENST00000474665 AOX1Q06278 1338 aa8.57□□□□□ -1.04
LIMD1-204ENST00000474665 PDE4AP27815 886 aa8.57□□□□□ -1.04
LIMD1-204ENST00000474665 CHAF1AQ13111 956 aaPredicted RBP8.57□□□□□ -1.04
LIMD1-204ENST00000474665 TNIP1Q15025 636 aa8.57□□□□□ -1.04
LIMD1-204ENST00000474665 B4GALNT3Q6L9W6 998 aa8.57□□□□□ -1.04
LIMD1-204ENST00000474665 SKAP1Q86WV1 359 aa8.57□□□□□ -1.04
LIMD1-204ENST00000474665 VPS37DQ86XT2 251 aa8.57□□□□□ -1.04
LIMD1-204ENST00000474665 ZNF384Q8TF68 577 aa8.57□□□□□ -1.04
LIMD1-204ENST00000474665 BCL11AQ9H165 835 aa8.57□□□□□ -1.04
LIMD1-204ENST00000474665 SNRKQ9NRH2 765 aa8.57□□□□□ -1.04
LIMD1-204ENST00000474665 RAPGEFL1Q9UHV5 662 aa8.57□□□□□ -1.04
LIMD1-204ENST00000474665 CNOT7Q9UIV1 285 aaKnown RBP8.57□□□□□ -1.04
LIMD1-204ENST00000474665 CEP290O15078 2479 aa8.57□□□□□ -1.04
LIMD1-204ENST00000474665 PDS5AQ29RF7 1337 aaKnown RBP8.56□□□□□ -1.04
LIMD1-204ENST00000474665 G3V3G9 751 aa8.56□□□□□ -1.04
LIMD1-204ENST00000474665 CYP2E1P05181 493 aaPredicted RBP8.56□□□□□ -1.04
LIMD1-204ENST00000474665 COL9A1P20849 921 aa8.56□□□□□ -1.04
LIMD1-204ENST00000474665 ZNF280AP59817 542 aaPredicted RBP8.56□□□□□ -1.04
LIMD1-204ENST00000474665 FKBP1AP62942 108 aaKnown RBP8.56□□□□□ -1.04
LIMD1-204ENST00000474665 MFSD14BQ5SR56 506 aa8.56□□□□□ -1.04
LIMD1-204ENST00000474665 DCAF8Q5TAQ9 597 aa8.56□□□□□ -1.04
LIMD1-204ENST00000474665 TBC1D9Q6ZT07 1266 aa8.56□□□□□ -1.04
LIMD1-204ENST00000474665 OTOP1Q7RTM1 612 aa8.56□□□□□ -1.04
LIMD1-204ENST00000474665 SAMD7Q7Z3H4 446 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms