RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 ADRA2BP18089 450 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 GNAT2P19087 354 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 NASPP49321 788 aaPredicted RBP11.56□□□□□ -0.56
USP39-214ENST00000474572 BCAMP50895 628 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 HAND2P61296 217 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 FGD1P98174 961 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 FOXD4L6Q3SYB3 417 aaPredicted RBP11.56□□□□□ -0.56
USP39-214ENST00000474572 CCDC88AQ3V6T2 1871 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 CCDC183Q5T5S1 534 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 FOXD4L3Q6VB84 417 aaPredicted RBP11.56□□□□□ -0.56
USP39-214ENST00000474572 AMIGO3Q86WK7 504 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 TBC1D10CQ8IV04 446 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 MAGEB6Q8N7X4 407 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 CELF1Q92879 486 aaKnown RBP11.56□□□□□ -0.56
USP39-214ENST00000474572 ARHGEF1Q92888 912 aaKnown RBP11.56□□□□□ -0.56
USP39-214ENST00000474572 AIDAQ96BJ3 306 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 SETDB2Q96T68 719 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 RBSNQ9H1K0 784 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 DUOX1Q9NRD9 1551 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 KIF3AQ9Y496 699 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 IRS2Q9Y4H2 1338 aa11.56□□□□□ -0.56
USP39-214ENST00000474572 GSG1L2A8MUP6 293 aa11.55□□□□□ -0.56
USP39-214ENST00000474572 SH2B2O14492 632 aaPredicted RBP11.55□□□□□ -0.56
USP39-214ENST00000474572 IGSF3O75054 1194 aa11.55□□□□□ -0.56
USP39-214ENST00000474572 ZPR1O75312 459 aa11.55□□□□□ -0.56
USP39-214ENST00000474572 MBD4O95243 580 aa11.55□□□□□ -0.56
USP39-214ENST00000474572 TM4SF1P30408 202 aa11.55□□□□□ -0.56
USP39-214ENST00000474572 FBXO33Q7Z6M2 555 aa11.55□□□□□ -0.56
USP39-214ENST00000474572 RALYLQ86SE5 291 aaKnown RBP11.55□□□□□ -0.56
USP39-214ENST00000474572 IFNL3Q8IZI9 196 aa11.55□□□□□ -0.56
USP39-214ENST00000474572 FAM43AQ8N2R8 423 aa11.55□□□□□ -0.56
USP39-214ENST00000474572 TMEM87BQ96K49 555 aa11.55□□□□□ -0.56
USP39-214ENST00000474572 NLRP3Q96P20 1036 aa11.55□□□□□ -0.56
USP39-214ENST00000474572 MTA3Q9BTC8 594 aa11.55□□□□□ -0.56
USP39-214ENST00000474572 BCL11BQ9C0K0 894 aaPredicted RBP11.55□□□□□ -0.56
USP39-214ENST00000474572 SCAND2PQ9GZW5 306 aaPredicted RBP11.55□□□□□ -0.56
USP39-214ENST00000474572 HPS5Q9UPZ3 1129 aa11.55□□□□□ -0.56
USP39-214ENST00000474572 FDPSP14324 419 aaKnown RBP11.54□□□□□ -0.56
USP39-214ENST00000474572 CCDC173Q0VFZ6 552 aa11.54□□□□□ -0.56
USP39-214ENST00000474572 ATL3Q6DD88 541 aa11.54□□□□□ -0.56
USP39-214ENST00000474572 TMED8Q6PL24 325 aaPredicted RBP11.54□□□□□ -0.56
USP39-214ENST00000474572 TPTE2Q6XPS3 522 aa11.54□□□□□ -0.56
USP39-214ENST00000474572 SMIM5Q71RC9 77 aa11.54□□□□□ -0.56
USP39-214ENST00000474572 CYB5R4Q7L1T6 521 aa11.54□□□□□ -0.56
USP39-214ENST00000474572 CHST3Q7LGC8 479 aa11.54□□□□□ -0.56
USP39-214ENST00000474572 SEPT12Q8IYM1 358 aa11.54□□□□□ -0.56
USP39-214ENST00000474572 FAM184AQ8NB25 1140 aa11.54□□□□□ -0.56
USP39-214ENST00000474572 FUCA2Q9BTY2 467 aa11.54□□□□□ -0.56
USP39-214ENST00000474572 ANKRD2Q9GZV1 360 aa11.54□□□□□ -0.56
USP39-214ENST00000474572 GNL3LQ9NVN8 582 aaKnown RBP11.54□□□□□ -0.56
USP39-214ENST00000474572 DENND2AQ9ULE3 1009 aa11.54□□□□□ -0.56
USP39-214ENST00000474572 LTBP1Q14766 1721 aa11.53□□□□□ -0.56
USP39-214ENST00000474572 NRXN2Q9P2S2 1712 aa11.53□□□□□ -0.56
USP39-214ENST00000474572 KLF18A0A0U1RQI7 1052 aa11.53□□□□□ -0.56
USP39-214ENST00000474572 HSPA1LP34931 641 aa11.53□□□□□ -0.56
USP39-214ENST00000474572 ADD1P35611 737 aaKnown RBP11.53□□□□□ -0.56
USP39-214ENST00000474572 RPS8P62241 208 aaKnown RBP11.53□□□□□ -0.56
USP39-214ENST00000474572 CCT2P78371 535 aaKnown RBP11.53□□□□□ -0.56
USP39-214ENST00000474572 TRDNQ13061 729 aa11.53□□□□□ -0.56
USP39-214ENST00000474572 MEX3CQ5U5Q3 659 aaKnown RBP11.53□□□□□ -0.56
USP39-214ENST00000474572 BICDL1Q6ZP65 573 aa11.53□□□□□ -0.56
USP39-214ENST00000474572 FERMT3Q86UX7 667 aa11.53□□□□□ -0.56
USP39-214ENST00000474572 SGMS1Q86VZ5 419 aa11.53□□□□□ -0.56
USP39-214ENST00000474572 NBPF5PQ86XG9 351 aaPredicted RBP11.53□□□□□ -0.56
USP39-214ENST00000474572 LCORLQ8N3X6 602 aa11.53□□□□□ -0.56
USP39-214ENST00000474572 NKX2-3Q8TAU0 364 aa11.53□□□□□ -0.56
USP39-214ENST00000474572 LEO1Q8WVC0 666 aaPredicted RBP11.53□□□□□ -0.56
USP39-214ENST00000474572 STAG1Q8WVM7 1258 aa11.53□□□□□ -0.56
USP39-214ENST00000474572 PDLIM2Q96JY6 352 aa11.53□□□□□ -0.56
USP39-214ENST00000474572 FAM84BQ96KN1 310 aaPredicted RBP11.53□□□□□ -0.56
USP39-214ENST00000474572 TSPY26PQ9H489 355 aa11.53□□□□□ -0.56
USP39-214ENST00000474572 ARMT1Q9H993 441 aa11.53□□□□□ -0.56
USP39-214ENST00000474572 NCOA5Q9HCD5 579 aaKnown RBP11.53□□□□□ -0.56
USP39-214ENST00000474572 GPHNQ9NQX3 736 aaPredicted RBP11.53□□□□□ -0.56
USP39-214ENST00000474572 ANAPC4Q9UJX5 808 aa11.53□□□□□ -0.56
USP39-214ENST00000474572 ANGEL1Q9UNK9 670 aaKnown RBP11.53□□□□□ -0.56
USP39-214ENST00000474572 NEDD4P46934 1319 aa11.53□□□□□ -0.56
USP39-214ENST00000474572 H3BQV1 296 aa11.52□□□□□ -0.57
USP39-214ENST00000474572 DHX16O60231 1041 aaKnown RBP11.52□□□□□ -0.57
USP39-214ENST00000474572 LIFRP42702 1097 aa11.52□□□□□ -0.57
USP39-214ENST00000474572 GYG1P46976 350 aa11.52□□□□□ -0.57
USP39-214ENST00000474572 CAVIN4Q5BKX8 364 aa11.52□□□□□ -0.57
USP39-214ENST00000474572 FAM182BQ5T319 152 aa11.52□□□□□ -0.57
USP39-214ENST00000474572 IFFO2Q5TF58 517 aa11.52□□□□□ -0.57
USP39-214ENST00000474572 FAM173BQ6P4H8 233 aa11.52□□□□□ -0.57
USP39-214ENST00000474572 IGDCC4Q8TDY8 1250 aa11.52□□□□□ -0.57
USP39-214ENST00000474572 DDX11Q96FC9 970 aa11.52□□□□□ -0.57
USP39-214ENST00000474572 RIOK1Q9BRS2 568 aaKnown RBP11.52□□□□□ -0.57
USP39-214ENST00000474572 NAPBQ9H115 298 aa11.52□□□□□ -0.57
USP39-214ENST00000474572 CNNM2Q9H8M5 875 aa11.52□□□□□ -0.57
USP39-214ENST00000474572 LRRC4BQ9NT99 713 aa11.52□□□□□ -0.57
USP39-214ENST00000474572 TACC3Q9Y6A5 838 aa11.52□□□□□ -0.57
USP39-214ENST00000474572 GOLGA8BA8MQT2 603 aa11.51□□□□□ -0.57
USP39-214ENST00000474572 GTF2E1P29083 439 aaPredicted RBP11.51□□□□□ -0.57
USP39-214ENST00000474572 NFIXQ14938 502 aa11.51□□□□□ -0.57
USP39-214ENST00000474572 AKNAD1Q5T1N1 836 aa11.51□□□□□ -0.57
USP39-214ENST00000474572 TRAPPC3LQ5T215 181 aa11.51□□□□□ -0.57
USP39-214ENST00000474572 FAM196AQ6ZSG2 479 aa11.51□□□□□ -0.57
USP39-214ENST00000474572 C15orf52Q6ZUT6 534 aaKnown RBP11.51□□□□□ -0.57
USP39-214ENST00000474572 KRT23Q9C075 422 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms