RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 MYCP01106 439 aaPredicted RBP14.87□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 GNAQP50148 359 aa14.87□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CPLX4Q7Z7G2 160 aa14.87□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CCDC24Q8N4L8 307 aa14.87□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 ARFGAP3Q9NP61 516 aa14.87□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CCT6AP40227 531 aaKnown RBP14.87□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 PRR16Q569H4 304 aa14.87□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 WDR44Q5JSH3 913 aa14.87□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 ITM2BQ9Y287 266 aa14.87□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 MAFGO15525 162 aa14.87□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CNNM2Q9H8M5 875 aa14.87□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 SORBS3O60504 671 aa14.87□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 TMTC2Q8N394 836 aa14.87□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CTAGE1Q96RT6 745 aa14.87□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 LRRC9Q6ZRR7 1453 aa14.86□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 TRPC3Q13507 836 aa14.86□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 PA2G4Q9UQ80 394 aaKnown RBP14.86□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 LETM2Q2VYF4 491 aa14.86□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CEP120Q8N960 986 aa14.86□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 NYXQ9GZU5 481 aa14.86□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 FAM204AQ9H8W3 233 aa14.86□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 MAPK8IP1Q9UQF2 711 aa14.86□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 USH1GQ495M9 461 aa14.86□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 KRT19P08727 400 aa14.86□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 RHOXF2BP0C7M4 288 aa14.86□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 KRT2P35908 639 aa14.86□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 IFRD2Q12894 506 aaPredicted RBP14.86□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 FMNL3Q8IVF7 1028 aa14.86□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 RHOXF2Q9BQY4 288 aa14.86□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 RBM28Q9NW13 759 aaKnown RBP14.86□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 GNPATO15228 680 aa14.86□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 VIMP08670 466 aaKnown RBP14.86□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 BRDTQ58F21 947 aaPredicted RBP14.86□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 DMRT2Q9Y5R5 561 aa14.86□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 PTPRCP08575 1304 aa14.86□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CADPS2Q86UW7 1296 aa14.86□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 PPP1R12AO14974 1030 aaPredicted RBP14.85□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 RFC1P35251 1148 aaPredicted RBP14.85□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 RAD51AP2Q09MP3 1159 aa14.85□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CCDC129Q6ZRS4 1044 aa14.85□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 NFATC2IPQ8NCF5 419 aa14.85□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CTAGE15A4D2H0 777 aa14.85□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CTAGE8P0CG41 777 aa14.85□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 SYT1P21579 422 aa14.85□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CNGA1P29973 690 aa14.85□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CTAGE6Q86UF2 777 aa14.85□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CTAGE4Q8IX94 777 aa14.85□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 MCMDC2Q4G0Z9 681 aa14.85□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 ZSCAN16Q9H4T2 348 aaPredicted RBP14.85□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 WASLO00401 505 aaPredicted RBP14.85□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 PLEKHH1Q9ULM0 1364 aa14.85□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 BSPRYQ5W0U4 402 aa14.85□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CCDC170Q8IYT3 715 aa14.85□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 MSH6P52701 1360 aa14.85□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 VWA3AA6NCI4 1184 aa14.84□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 TRIM75PA6NK02 468 aa14.84□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 MAN1A1P33908 653 aa14.84□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 RBM8AQ9Y5S9 174 aaKnown RBP14.84□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CAMSAP2Q08AD1 1489 aa14.84□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CCNT1O60563 726 aaKnown RBP14.84□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 ALDH1L2Q3SY69 923 aa14.84□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 SPOPO43791 374 aa14.84□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 USTQ9Y2C2 406 aa14.84□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 MYH10P35580 1976 aa14.84□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 SDCCAG8Q86SQ7 713 aaPredicted RBP14.84□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 SMCR8Q8TEV9 937 aaPredicted RBP14.84□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 LMBR1Q8WVP7 490 aa14.84□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 GRM8O00222 908 aa14.84□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 NEMFO60524 1076 aa14.84□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 SKILP12757 684 aa14.84□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 KCNG4Q8TDN1 519 aa14.84□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 DNAJC25Q9H1X3 360 aa14.84□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 HMG20BQ9P0W2 317 aa14.84□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 SWAP70Q9UH65 585 aa14.84□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CCDC110Q8TBZ0 833 aa14.83□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 PAG1Q9NWQ8 432 aa14.83□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 TSTA3Q13630 321 aaPredicted RBP14.83□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 TBC1D2Q9BYX2 928 aa14.83□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 TRAF5O00463 557 aa14.83□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 KIAA1107Q9UPP5 1409 aa14.83□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 METTL13Q8N6R0 699 aa14.83□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 HFM1A2PYH4 1435 aa14.83□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 KRT86O43790 486 aa14.82□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 ITIH3Q06033 890 aa14.82□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 GPR162Q16538 588 aa14.82□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 TBC1D7Q9P0N9 293 aa14.82□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 APOBRQ0VD83 1088 aa14.82□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 KSR1Q8IVT5 923 aa14.82□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 DNM1Q05193 864 aaKnown RBP14.82□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 MICALL1Q8N3F8 863 aa14.82□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 STMN4Q9H169 189 aaPredicted RBP14.82□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 STIM2Q9P246 746 aa14.82□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 PIK3R4Q99570 1358 aa14.82□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 MGEA5O60502 916 aa14.82□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 HPDP32754 393 aaPredicted RBP14.82□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 STRN3Q13033 797 aa14.82□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 PPFIA2O75334 1257 aa14.82□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 CALML3P27482 149 aa14.82□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 ZNF569Q5MCW4 686 aa14.82□□□□□ -0.04
NPHP3-ACAD11-201ENST00000471702 FAM200AQ8TCP9 573 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms