RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 PANK2Q9BZ23 570 aa21.58■■□□□ 1.04
COL9A3-205ENST00000466192 DENND2AQ9ULE3 1009 aa21.58■■□□□ 1.04
COL9A3-205ENST00000466192 PATL2C9JE40 543 aaKnown RBP21.57■■□□□ 1.04
COL9A3-205ENST00000466192 SCRN1Q12765 414 aa21.57■■□□□ 1.04
COL9A3-205ENST00000466192 EPB41L4AQ9HCS5 686 aaPredicted RBP21.57■■□□□ 1.04
COL9A3-205ENST00000466192 TFCP2L1Q9NZI6 479 aa21.57■■□□□ 1.04
COL9A3-205ENST00000466192 RBM27Q9P2N5 1060 aaKnown RBP21.57■■□□□ 1.04
COL9A3-205ENST00000466192 VPS37CA5D8V6 355 aaPredicted RBP21.57■■□□□ 1.04
COL9A3-205ENST00000466192 PFKFB2O60825 505 aa21.57■■□□□ 1.04
COL9A3-205ENST00000466192 DDR1Q08345 913 aa21.57■■□□□ 1.04
COL9A3-205ENST00000466192 ALX1Q15699 326 aa21.57■■□□□ 1.04
COL9A3-205ENST00000466192 ZSCAN23Q3MJ62 389 aa21.57■■□□□ 1.04
COL9A3-205ENST00000466192 TBC1D10CQ8IV04 446 aa21.57■■□□□ 1.04
COL9A3-205ENST00000466192 LCORLQ8N3X6 602 aa21.57■■□□□ 1.04
COL9A3-205ENST00000466192 FBXL16Q8N461 479 aa21.57■■□□□ 1.04
COL9A3-205ENST00000466192 NCOA7Q8NI08 942 aa21.57■■□□□ 1.04
COL9A3-205ENST00000466192 LARP1BQ659C4 914 aaKnown RBP21.56■■□□□ 1.04
COL9A3-205ENST00000466192 ADGRA1Q86SQ6 560 aa21.56■■□□□ 1.04
COL9A3-205ENST00000466192 USP48Q86UV5 1035 aa21.56■■□□□ 1.04
COL9A3-205ENST00000466192 IFNL3Q8IZI9 196 aa21.56■■□□□ 1.04
COL9A3-205ENST00000466192 IRS2Q9Y4H2 1338 aa21.56■■□□□ 1.04
COL9A3-205ENST00000466192 PLSCR1O15162 318 aa21.55■■□□□ 1.04
COL9A3-205ENST00000466192 JAK2O60674 1132 aa21.55■■□□□ 1.04
COL9A3-205ENST00000466192 HIBADHP31937 336 aaKnown RBP21.55■■□□□ 1.04
COL9A3-205ENST00000466192 ZNF827Q17R98 1081 aa21.55■■□□□ 1.04
COL9A3-205ENST00000466192 CRY2Q49AN0 593 aa21.55■■□□□ 1.04
COL9A3-205ENST00000466192 TXNRD3Q86VQ6 643 aa21.55■■□□□ 1.04
COL9A3-205ENST00000466192 MIGA1Q8NAN2 632 aa21.55■■□□□ 1.04
COL9A3-205ENST00000466192 GPHNQ9NQX3 736 aaPredicted RBP21.55■■□□□ 1.04
COL9A3-205ENST00000466192 RAI14Q9P0K7 980 aa21.55■■□□□ 1.04
COL9A3-205ENST00000466192 CNPY2Q9Y2B0 182 aa21.55■■□□□ 1.04
COL9A3-205ENST00000466192 ZMYM6O95789 1325 aa21.55■■□□□ 1.04
COL9A3-205ENST00000466192 PNPLA7Q6ZV29 1317 aa21.55■■□□□ 1.04
COL9A3-205ENST00000466192 GSG1L2A8MUP6 293 aa21.55■■□□□ 1.04
COL9A3-205ENST00000466192 SEMA3EO15041 775 aa21.55■■□□□ 1.04
COL9A3-205ENST00000466192 PRKAB2O43741 272 aa21.55■■□□□ 1.04
COL9A3-205ENST00000466192 APBA3O96018 575 aa21.55■■□□□ 1.04
COL9A3-205ENST00000466192 CYP7A1P22680 504 aa21.55■■□□□ 1.04
COL9A3-205ENST00000466192 MCM5P33992 734 aa21.55■■□□□ 1.04
COL9A3-205ENST00000466192 ANTXR2P58335 489 aa21.55■■□□□ 1.04
COL9A3-205ENST00000466192 ST5P78524 1137 aa21.55■■□□□ 1.04
COL9A3-205ENST00000466192 ATP6V1DQ9Y5K8 247 aa21.55■■□□□ 1.04
COL9A3-205ENST00000466192 PRC1O43663 620 aa21.54■■□□□ 1.04
COL9A3-205ENST00000466192 MBD3O95983 291 aa21.54■■□□□ 1.04
COL9A3-205ENST00000466192 RALYLQ86SE5 291 aaKnown RBP21.54■■□□□ 1.04
COL9A3-205ENST00000466192 CCDC88AQ3V6T2 1871 aa21.54■■□□□ 1.04
COL9A3-205ENST00000466192 POLRMTO00411 1230 aaKnown RBP21.54■■□□□ 1.04
COL9A3-205ENST00000466192 NKX2-3Q8TAU0 364 aa21.54■■□□□ 1.04
COL9A3-205ENST00000466192 RPGRQ92834 1020 aaKnown RBP21.54■■□□□ 1.04
COL9A3-205ENST00000466192 TMEM63CQ9P1W3 806 aa21.54■■□□□ 1.04
COL9A3-205ENST00000466192 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.54■■□□□ 1.04
COL9A3-205ENST00000466192 GADD45BO75293 160 aaPredicted RBP21.53■■□□□ 1.04
COL9A3-205ENST00000466192 ZNF274Q96GC6 653 aaPredicted RBP21.53■■□□□ 1.04
COL9A3-205ENST00000466192 PDCP20941 246 aa21.53■■□□□ 1.04
COL9A3-205ENST00000466192 PDIA3P30101 505 aaKnown RBP21.53■■□□□ 1.04
COL9A3-205ENST00000466192 EVCP57679 992 aa21.53■■□□□ 1.04
COL9A3-205ENST00000466192 ZNF384Q8TF68 577 aa21.53■■□□□ 1.04
COL9A3-205ENST00000466192 AKT1S1Q96B36 256 aa21.53■■□□□ 1.04
COL9A3-205ENST00000466192 NAPBQ9H115 298 aa21.53■■□□□ 1.04
COL9A3-205ENST00000466192 ANKIB1Q9P2G1 1089 aa21.53■■□□□ 1.04
COL9A3-205ENST00000466192 SLC4A4Q9Y6R1 1079 aa21.53■■□□□ 1.04
COL9A3-205ENST00000466192 ANKRD31Q8N7Z5 1873 aa21.52■■□□□ 1.04
COL9A3-205ENST00000466192 PDS5AQ29RF7 1337 aaKnown RBP21.52■■□□□ 1.04
COL9A3-205ENST00000466192 GNAT2P19087 354 aa21.52■■□□□ 1.04
COL9A3-205ENST00000466192 HMGB2P26583 209 aaKnown RBP21.52■■□□□ 1.04
COL9A3-205ENST00000466192 RXRBP28702 533 aa21.52■■□□□ 1.04
COL9A3-205ENST00000466192 ZNF445P59923 1031 aa21.52■■□□□ 1.04
COL9A3-205ENST00000466192 CDC37L1Q7L3B6 337 aa21.52■■□□□ 1.04
COL9A3-205ENST00000466192 TIAM2Q8IVF5 1701 aa21.52■■□□□ 1.04
COL9A3-205ENST00000466192 WDR19Q8NEZ3 1342 aa21.51■■□□□ 1.03
COL9A3-205ENST00000466192 CCT2P78371 535 aaKnown RBP21.51■■□□□ 1.03
COL9A3-205ENST00000466192 SMARCC2Q8TAQ2 1214 aa21.51■■□□□ 1.03
COL9A3-205ENST00000466192 LLPHQ9BRT6 129 aaKnown RBP21.51■■□□□ 1.03
COL9A3-205ENST00000466192 TNS1Q9HBL0 1735 aaKnown RBP21.51■■□□□ 1.03
COL9A3-205ENST00000466192 CTDNEP1O95476 244 aa21.51■■□□□ 1.03
COL9A3-205ENST00000466192 PDIA4P13667 645 aaKnown RBP21.51■■□□□ 1.03
COL9A3-205ENST00000466192 TRDNQ13061 729 aa21.51■■□□□ 1.03
COL9A3-205ENST00000466192 NCOA5Q9HCD5 579 aaKnown RBP21.51■■□□□ 1.03
COL9A3-205ENST00000466192 NAP1L2Q9ULW6 460 aaPredicted RBP21.51■■□□□ 1.03
COL9A3-205ENST00000466192 BAZ2AQ9UIF9 1905 aaKnown RBP21.51■■□□□ 1.03
COL9A3-205ENST00000466192 XDHP47989 1333 aa21.5■■□□□ 1.03
COL9A3-205ENST00000466192 FIBPO43427 364 aa21.5■■□□□ 1.03
COL9A3-205ENST00000466192 DNM1Q05193 864 aaKnown RBP21.5■■□□□ 1.03
COL9A3-205ENST00000466192 CYB5R4Q7L1T6 521 aa21.5■■□□□ 1.03
COL9A3-205ENST00000466192 COL23A1Q86Y22 540 aaPredicted RBP21.5■■□□□ 1.03
COL9A3-205ENST00000466192 NSUN7Q8NE18 718 aaKnown RBP21.5■■□□□ 1.03
COL9A3-205ENST00000466192 LEMD3Q9Y2U8 911 aa21.5■■□□□ 1.03
COL9A3-205ENST00000466192 NEDD4P46934 1319 aa21.5■■□□□ 1.03
COL9A3-205ENST00000466192 MAGEB6P1A0A0J9YX57 407 aa21.5■■□□□ 1.03
COL9A3-205ENST00000466192 CTDSPL2Q05D32 466 aa21.5■■□□□ 1.03
COL9A3-205ENST00000466192 FERMT3Q86UX7 667 aa21.5■■□□□ 1.03
COL9A3-205ENST00000466192 TMEM87AQ8NBN3 555 aa21.5■■□□□ 1.03
COL9A3-205ENST00000466192 DDX11Q96FC9 970 aa21.5■■□□□ 1.03
COL9A3-205ENST00000466192 RIOK1Q9BRS2 568 aaKnown RBP21.5■■□□□ 1.03
COL9A3-205ENST00000466192 INCENPQ9NQS7 918 aa21.5■■□□□ 1.03
COL9A3-205ENST00000466192 MAST2Q6P0Q8 1798 aa21.49■■□□□ 1.03
COL9A3-205ENST00000466192 TPRNQ4KMQ1 711 aa21.49■■□□□ 1.03
COL9A3-205ENST00000466192 NAA16Q6N069 864 aaPredicted RBP21.49■■□□□ 1.03
COL9A3-205ENST00000466192 NACAP1Q9BZK3 213 aa21.49■■□□□ 1.03
COL9A3-205ENST00000466192 TACC3Q9Y6A5 838 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms