RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 CRKLP46109 303 aaKnown RBP10.45□□□□□ -0.74
SYNE1-217ENST00000466159 TERF1P54274 439 aa10.45□□□□□ -0.74
SYNE1-217ENST00000466159 SPATA5Q8NB90 893 aa10.45□□□□□ -0.74
SYNE1-217ENST00000466159 ENGASEQ8NFI3 743 aa10.45□□□□□ -0.74
SYNE1-217ENST00000466159 FBXO18Q8NFZ0 1043 aa10.45□□□□□ -0.74
SYNE1-217ENST00000466159 STRBPQ96SI9 672 aaKnown RBP10.45□□□□□ -0.74
SYNE1-217ENST00000466159 SENP2Q9HC62 589 aa10.45□□□□□ -0.74
SYNE1-217ENST00000466159 CCDC87Q9NVE4 849 aa10.45□□□□□ -0.74
SYNE1-217ENST00000466159 PCDHA7Q9UN72 937 aa10.45□□□□□ -0.74
SYNE1-217ENST00000466159 CLIC4Q9Y696 253 aa10.45□□□□□ -0.74
SYNE1-217ENST00000466159 PLCH1Q4KWH8 1693 aa10.45□□□□□ -0.74
SYNE1-217ENST00000466159 ATRNO75882 1429 aa10.45□□□□□ -0.74
SYNE1-217ENST00000466159 ROBO1Q9Y6N7 1651 aa10.45□□□□□ -0.74
SYNE1-217ENST00000466159 A0A087WWV3 80 aa10.45□□□□□ -0.74
SYNE1-217ENST00000466159 RASGRF1Q13972 1273 aa10.45□□□□□ -0.74
SYNE1-217ENST00000466159 DDB1Q16531 1140 aa10.45□□□□□ -0.74
SYNE1-217ENST00000466159 CCDC73Q6ZRK6 1079 aa10.45□□□□□ -0.74
SYNE1-217ENST00000466159 FSIP1Q8NA03 581 aa10.45□□□□□ -0.74
SYNE1-217ENST00000466159 AIDAQ96BJ3 306 aa10.45□□□□□ -0.74
SYNE1-217ENST00000466159 MPHOSPH8Q99549 860 aa10.45□□□□□ -0.74
SYNE1-217ENST00000466159 ANGEL1Q9UNK9 670 aaKnown RBP10.45□□□□□ -0.74
SYNE1-217ENST00000466159 WDR19Q8NEZ3 1342 aa10.45□□□□□ -0.74
SYNE1-217ENST00000466159 SLC5A1P13866 664 aa10.44□□□□□ -0.74
SYNE1-217ENST00000466159 FAM160A1Q05DH4 1040 aa10.44□□□□□ -0.74
SYNE1-217ENST00000466159 DNTTIP2Q5QJE6 756 aaKnown RBP10.44□□□□□ -0.74
SYNE1-217ENST00000466159 MAGEB6Q8N7X4 407 aa10.44□□□□□ -0.74
SYNE1-217ENST00000466159 TDRD7Q8NHU6 1098 aaKnown RBP10.44□□□□□ -0.74
SYNE1-217ENST00000466159 ERCC4Q92889 916 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-217ENST00000466159 UTP14AQ9BVJ6 771 aaKnown RBP10.44□□□□□ -0.74
SYNE1-217ENST00000466159 RTEL1Q9NZ71 1219 aa10.44□□□□□ -0.74
SYNE1-217ENST00000466159 TAOK2Q9UL54 1235 aa10.44□□□□□ -0.74
SYNE1-217ENST00000466159 PYCARDQ9ULZ3 195 aa10.44□□□□□ -0.74
SYNE1-217ENST00000466159 KIF28PB7ZC32 967 aa10.44□□□□□ -0.74
SYNE1-217ENST00000466159 KINO60870 393 aaKnown RBP10.44□□□□□ -0.74
SYNE1-217ENST00000466159 CAMTA2O94983 1202 aa10.44□□□□□ -0.74
SYNE1-217ENST00000466159 ITPK1Q13572 414 aa10.44□□□□□ -0.74
SYNE1-217ENST00000466159 C11orf57Q6ZUT1 292 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-217ENST00000466159 LINC00301Q8NCQ3 95 aa10.44□□□□□ -0.74
SYNE1-217ENST00000466159 AIFM3Q96NN9 605 aa10.44□□□□□ -0.74
SYNE1-217ENST00000466159 TRIM5Q9C035 493 aa10.44□□□□□ -0.74
SYNE1-217ENST00000466159 NEDD4P46934 1319 aa10.44□□□□□ -0.74
SYNE1-217ENST00000466159 WNK3Q9BYP7 1800 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 LRP5O75197 1615 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 UQCRHLA0A096LP55 91 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 LOC102724428A0A0B4J2F2 783 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 A0A1B0GVL5 298 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 SH2B2O14492 632 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-217ENST00000466159 MBD4O95243 580 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 UQCRHP07919 91 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 PTGS1P23219 599 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 SIK1P57059 783 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 CCDC144CPQ8IYA2 1237 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 MARCH10Q8NA82 808 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-217ENST00000466159 AK7Q96M32 723 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 EPB41L4AQ9HCS5 686 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-217ENST00000466159 C4AP0C0L4 1744 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 C4BP0C0L5 1744 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 MYH14Q7Z406 1995 aaKnown RBP10.43□□□□□ -0.74
SYNE1-217ENST00000466159 SPATA31A1Q5TZJ5 1347 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 GOLGA6L6A8MZA4 724 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 CTAGE5O15320 804 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 CDC27P30260 824 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 METAP2P50579 478 aaKnown RBP eCLIP10.43□□□□□ -0.74
SYNE1-217ENST00000466159 BCAMP50895 628 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 CTDSPL2Q05D32 466 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 IQCB1Q15051 598 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 STK38Q15208 465 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 MYSM1Q5VVJ2 828 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 ADALQ6DHV7 355 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 ARMT1Q9H993 441 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 NRBP1Q9UHY1 535 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 NIP7Q9Y221 180 aaKnown RBP eCLIP10.43□□□□□ -0.74
SYNE1-217ENST00000466159 ZMYM6O95789 1325 aa10.43□□□□□ -0.74
SYNE1-217ENST00000466159 PATL2C9JE40 543 aaKnown RBP10.42□□□□□ -0.74
SYNE1-217ENST00000466159 ZNF75DP51815 510 aa10.42□□□□□ -0.74
SYNE1-217ENST00000466159 MAP3K12Q12852 859 aa10.42□□□□□ -0.74
SYNE1-217ENST00000466159 SF3A1Q15459 793 aaKnown RBP10.42□□□□□ -0.74
SYNE1-217ENST00000466159 APOA5Q6Q788 366 aa10.42□□□□□ -0.74
SYNE1-217ENST00000466159 MICU3Q86XE3 530 aa10.42□□□□□ -0.74
SYNE1-217ENST00000466159 PLA2G4DQ86XP0 818 aa10.42□□□□□ -0.74
SYNE1-217ENST00000466159 DRC7Q8IY82 874 aa10.42□□□□□ -0.74
SYNE1-217ENST00000466159 IFNL3Q8IZI9 196 aa10.42□□□□□ -0.74
SYNE1-217ENST00000466159 FMR1NBQ8N0W7 255 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-217ENST00000466159 KIAA1524Q8TCG1 905 aa10.42□□□□□ -0.74
SYNE1-217ENST00000466159 IGDCC4Q8TDY8 1250 aa10.42□□□□□ -0.74
SYNE1-217ENST00000466159 MRPS27Q92552 414 aaKnown RBP10.42□□□□□ -0.74
SYNE1-217ENST00000466159 PHKBQ93100 1093 aa10.42□□□□□ -0.74
SYNE1-217ENST00000466159 MYL10Q9BUA6 226 aa10.42□□□□□ -0.74
SYNE1-217ENST00000466159 SPTLC3Q9NUV7 552 aa10.42□□□□□ -0.74
SYNE1-217ENST00000466159 TACC3Q9Y6A5 838 aa10.42□□□□□ -0.74
SYNE1-217ENST00000466159 ARAP2Q8WZ64 1704 aa10.42□□□□□ -0.74
SYNE1-217ENST00000466159 PRKAB2O43741 272 aa10.42□□□□□ -0.74
SYNE1-217ENST00000466159 TPM3P06753 285 aa10.42□□□□□ -0.74
SYNE1-217ENST00000466159 NDUFA8P51970 172 aa10.42□□□□□ -0.74
SYNE1-217ENST00000466159 KIF23Q02241 960 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-217ENST00000466159 STX1AQ16623 288 aa10.42□□□□□ -0.74
SYNE1-217ENST00000466159 CCDC186Q7Z3E2 898 aa10.42□□□□□ -0.74
SYNE1-217ENST00000466159 NAPBQ9H115 298 aa10.42□□□□□ -0.74
SYNE1-217ENST00000466159 POLR3EQ9NVU0 708 aa10.42□□□□□ -0.74
SYNE1-217ENST00000466159 ZSWIM5Q9P217 1185 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms