RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-223	ENST00000463004	SERPINC1	P01008	464 aa		13.56	□□□□□ -0.24
RBM39-223	ENST00000463004	FSIP1	Q8NA03	581 aa		13.56	□□□□□ -0.24
RBM39-223	ENST00000463004	FEZ1	Q99689	392 aa		13.56	□□□□□ -0.24
RBM39-223	ENST00000463004	R3HCC1	Q9Y3T6	440 aa	Known RBP	13.56	□□□□□ -0.24
RBM39-223	ENST00000463004	GNA11	P29992	359 aa		13.56	□□□□□ -0.24
RBM39-223	ENST00000463004	RBM6	P78332	1123 aa	Known RBP	13.56	□□□□□ -0.24
RBM39-223	ENST00000463004	GRIPAP1	Q4V328	841 aa		13.56	□□□□□ -0.24
RBM39-223	ENST00000463004	FAM227B	Q96M60	508 aa		13.56	□□□□□ -0.24
RBM39-223	ENST00000463004	PLA2G12B	Q9BX93	195 aa		13.56	□□□□□ -0.24
RBM39-223	ENST00000463004	GREM2	Q9H772	168 aa		13.56	□□□□□ -0.24
RBM39-223	ENST00000463004	C6orf50	Q9HD87	102 aa		13.56	□□□□□ -0.24
RBM39-223	ENST00000463004	KIF13A	Q9H1H9	1805 aa		13.56	□□□□□ -0.24
RBM39-223	ENST00000463004	ZNF532	Q9HCE3	1301 aa		13.56	□□□□□ -0.24
RBM39-223	ENST00000463004	SIRT2	Q8IXJ6	389 aa		13.56	□□□□□ -0.24
RBM39-223	ENST00000463004	GJD4	Q96KN9	370 aa	Predicted RBP	13.56	□□□□□ -0.24
RBM39-223	ENST00000463004	NECAB1	Q8N987	351 aa		13.56	□□□□□ -0.24
RBM39-223	ENST00000463004	MPHOSPH6	Q99547	160 aa	Known RBP	13.56	□□□□□ -0.24
RBM39-223	ENST00000463004	CHRND	Q07001	517 aa		13.55	□□□□□ -0.24
RBM39-223	ENST00000463004	HOMER1	Q86YM7	354 aa		13.55	□□□□□ -0.24
RBM39-223	ENST00000463004	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.55	□□□□□ -0.24
RBM39-223	ENST00000463004	RGS12	O14924	1447 aa		13.55	□□□□□ -0.24
RBM39-223	ENST00000463004	IGKV5-2	P06315	115 aa		13.55	□□□□□ -0.24
RBM39-223	ENST00000463004	MIGA1	Q8NAN2	632 aa		13.55	□□□□□ -0.24
RBM39-223	ENST00000463004	CALML4	Q96GE6	196 aa		13.55	□□□□□ -0.24
RBM39-223	ENST00000463004	PTPDC1	A2A3K4	754 aa		13.55	□□□□□ -0.24
RBM39-223	ENST00000463004	ZMYM1	Q5SVZ6	1142 aa		13.55	□□□□□ -0.24
RBM39-223	ENST00000463004	PPFIBP1	Q86W92	1011 aa		13.55	□□□□□ -0.24
RBM39-223	ENST00000463004	ZNF274	Q96GC6	653 aa	Predicted RBP	13.55	□□□□□ -0.24
RBM39-223	ENST00000463004	DBNL	Q9UJU6	430 aa	Known RBP	13.55	□□□□□ -0.24
RBM39-223	ENST00000463004	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.54	□□□□□ -0.24
RBM39-223	ENST00000463004	PRAMEF22	A3QJZ6	481 aa		13.54	□□□□□ -0.24
RBM39-223	ENST00000463004	RRP36	Q96EU6	259 aa	Known RBP	13.54	□□□□□ -0.24
RBM39-223	ENST00000463004	RGL2	O15211	777 aa		13.54	□□□□□ -0.24
RBM39-223	ENST00000463004	OFD1	O75665	1012 aa		13.54	□□□□□ -0.24
RBM39-223	ENST00000463004	DEXI	O95424	95 aa		13.54	□□□□□ -0.24
RBM39-223	ENST00000463004	STX1A	Q16623	288 aa		13.54	□□□□□ -0.24
RBM39-223	ENST00000463004	FAM43A	Q8N2R8	423 aa		13.54	□□□□□ -0.24
RBM39-223	ENST00000463004	CNNM3	Q8NE01	707 aa		13.54	□□□□□ -0.24
RBM39-223	ENST00000463004	MYOM1	P52179	1685 aa		13.54	□□□□□ -0.24
RBM39-223	ENST00000463004	PDE6A	P16499	860 aa		13.54	□□□□□ -0.24
RBM39-223	ENST00000463004	MAP4K1	Q92918	833 aa		13.54	□□□□□ -0.24
RBM39-223	ENST00000463004	RTN4	Q9NQC3	1192 aa	Known RBP	13.54	□□□□□ -0.24
RBM39-223	ENST00000463004	SPATA31A5	Q5VU36	1347 aa		13.54	□□□□□ -0.24
RBM39-223	ENST00000463004	SPATA31A7	Q8IWB4	1347 aa		13.54	□□□□□ -0.24
RBM39-223	ENST00000463004	TAF5L	O75529	589 aa		13.54	□□□□□ -0.24
RBM39-223	ENST00000463004	LRRC24	Q50LG9	513 aa		13.54	□□□□□ -0.24
RBM39-223	ENST00000463004	RMND1	Q9NWS8	449 aa		13.54	□□□□□ -0.24
RBM39-223	ENST00000463004	ZNF804B	A4D1E1	1349 aa		13.53	□□□□□ -0.24
RBM39-223	ENST00000463004	AKNAD1	Q5T1N1	836 aa		13.53	□□□□□ -0.24
RBM39-223	ENST00000463004	TTLL11	Q8NHH1	800 aa		13.53	□□□□□ -0.24
RBM39-223	ENST00000463004	ZSWIM6	Q9HCJ5	1215 aa		13.53	□□□□□ -0.24
RBM39-223	ENST00000463004	COL15A1	P39059	1388 aa		13.53	□□□□□ -0.24
RBM39-223	ENST00000463004	TRIM75P	A6NK02	468 aa		13.53	□□□□□ -0.24
RBM39-223	ENST00000463004	GUCY1B3	Q02153	619 aa		13.53	□□□□□ -0.24
RBM39-223	ENST00000463004	RABL6	Q3YEC7	729 aa	Predicted RBP	13.53	□□□□□ -0.24
RBM39-223	ENST00000463004	BSDC1	Q9NW68	430 aa	Predicted RBP	13.53	□□□□□ -0.24
RBM39-223	ENST00000463004	MYO5B	Q9ULV0	1848 aa		13.53	□□□□□ -0.24
RBM39-223	ENST00000463004	ADCY9	O60503	1353 aa		13.53	□□□□□ -0.24
RBM39-223	ENST00000463004	MAP2	P11137	1827 aa	Known RBP	13.53	□□□□□ -0.24
RBM39-223	ENST00000463004	SYCE3	A1L190	88 aa		13.53	□□□□□ -0.24
RBM39-223	ENST00000463004	UBA7	P41226	1012 aa		13.53	□□□□□ -0.24
RBM39-223	ENST00000463004	APOBR	Q0VD83	1088 aa		13.53	□□□□□ -0.24
RBM39-223	ENST00000463004	ERMN	Q8TAM6	284 aa		13.53	□□□□□ -0.24
RBM39-223	ENST00000463004	MRPS27	Q92552	414 aa	Known RBP	13.53	□□□□□ -0.24
RBM39-223	ENST00000463004	ARMT1	Q9H993	441 aa		13.53	□□□□□ -0.24
RBM39-223	ENST00000463004	NEMF	O60524	1076 aa		13.52	□□□□□ -0.24
RBM39-223	ENST00000463004	ATP8A2	Q9NTI2	1148 aa		13.52	□□□□□ -0.24
RBM39-223	ENST00000463004		B4DLN1	442 aa		13.52	□□□□□ -0.24
RBM39-223	ENST00000463004	PPP1R12B	O60237	982 aa	Predicted RBP	13.52	□□□□□ -0.24
RBM39-223	ENST00000463004	SERPINB2	P05120	415 aa		13.52	□□□□□ -0.24
RBM39-223	ENST00000463004	MRPL12	P52815	198 aa	Known RBP	13.52	□□□□□ -0.24
RBM39-223	ENST00000463004	NF2	P35240	595 aa		13.52	□□□□□ -0.25
RBM39-223	ENST00000463004	RILPL1	Q5EBL4	403 aa		13.52	□□□□□ -0.25
RBM39-223	ENST00000463004	WWC2	Q6AWC2	1192 aa		13.52	□□□□□ -0.25
RBM39-223	ENST00000463004	TSG101	Q99816	390 aa		13.52	□□□□□ -0.25
RBM39-223	ENST00000463004	KRT2	P35908	639 aa		13.52	□□□□□ -0.25
RBM39-223	ENST00000463004	STXBP4	Q6ZWJ1	553 aa		13.52	□□□□□ -0.25
RBM39-223	ENST00000463004	CCDC82	Q8N4S0	544 aa		13.52	□□□□□ -0.25
RBM39-223	ENST00000463004	MCTP2	Q6DN12	878 aa		13.51	□□□□□ -0.25
RBM39-223	ENST00000463004	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.51	□□□□□ -0.25
RBM39-223	ENST00000463004	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.51	□□□□□ -0.25
RBM39-223	ENST00000463004	RIMBP2	O15034	1052 aa		13.51	□□□□□ -0.25
RBM39-223	ENST00000463004	SYT1	P21579	422 aa		13.51	□□□□□ -0.25
RBM39-223	ENST00000463004	LRRC2	Q9BYS8	371 aa		13.51	□□□□□ -0.25
RBM39-223	ENST00000463004	PARP1	P09874	1014 aa	Known RBP	13.51	□□□□□ -0.25
RBM39-223	ENST00000463004	PDILT	Q8N807	584 aa		13.51	□□□□□ -0.25
RBM39-223	ENST00000463004	TCEANC2	Q96MN5	208 aa		13.51	□□□□□ -0.25
RBM39-223	ENST00000463004		E7EWF7	191 aa		13.5	□□□□□ -0.25
RBM39-223	ENST00000463004	UTY	O14607	1347 aa		13.5	□□□□□ -0.25
RBM39-223	ENST00000463004	GRAP	Q13588	217 aa		13.5	□□□□□ -0.25
RBM39-223	ENST00000463004	GRAPL	Q8TC17	118 aa	Predicted RBP	13.5	□□□□□ -0.25
RBM39-223	ENST00000463004	PIBF1	Q8WXW3	757 aa		13.5	□□□□□ -0.25
RBM39-223	ENST00000463004	LSG1	Q9H089	658 aa	Known RBP	13.5	□□□□□ -0.25
RBM39-223	ENST00000463004	TFIP11	Q9UBB9	837 aa	Known RBP	13.5	□□□□□ -0.25
RBM39-223	ENST00000463004	PNMA2	Q9UL42	364 aa		13.5	□□□□□ -0.25
RBM39-223	ENST00000463004	KDM4F	A0A1W2PPD8	638 aa		13.5	□□□□□ -0.25
RBM39-223	ENST00000463004	KIF2A	O00139	706 aa	Predicted RBP	13.5	□□□□□ -0.25
RBM39-223	ENST00000463004	SASH1	O94885	1247 aa		13.5	□□□□□ -0.25
RBM39-223	ENST00000463004	HSPD1	P10809	573 aa	Known RBP	13.5	□□□□□ -0.25
RBM39-223	ENST00000463004	HSP90AA2P	Q14568	343 aa	Predicted RBP	13.5	□□□□□ -0.25

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