RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 POTEDQ86YR6 584 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 PI4K2BQ8TCG2 481 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 NACAP1Q9BZK3 213 aa7.11□□□□□ -1.27
VPS13D-202ENST00000460333 MKRN1Q9UHC7 482 aaKnown RBP7.11□□□□□ -1.27
VPS13D-202ENST00000460333 RTCBQ9Y3I0 505 aaKnown RBP7.11□□□□□ -1.27
VPS13D-202ENST00000460333 CDHR2Q9BYE9 1310 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 CTSWP56202 376 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 MAP3K12Q12852 859 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 GBP6Q6ZN66 633 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 USP48Q86UV5 1035 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 SETDB2Q96T68 719 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 PLCD4Q9BRC7 762 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 ZBTB1Q9Y2K1 713 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 RBM8AQ9Y5S9 174 aaKnown RBP7.1□□□□□ -1.27
VPS13D-202ENST00000460333 EBAG9O00559 213 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 SASH1O94885 1247 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 APBA3O96018 575 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 CRKLP46109 303 aaKnown RBP7.1□□□□□ -1.27
VPS13D-202ENST00000460333 TUBB2AQ13885 445 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 VPS72Q15906 364 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 CAVIN4Q5BKX8 364 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 MICALL1Q8N3F8 863 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 CTCFLQ8NI51 663 aaPredicted RBP7.1□□□□□ -1.27
VPS13D-202ENST00000460333 DBNDD2Q9BQY9 259 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 TUBB2BQ9BVA1 445 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 MARF1Q9Y4F3 1742 aaKnown RBP7.1□□□□□ -1.27
VPS13D-202ENST00000460333 COL15A1P39059 1388 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 KDM3BQ7LBC6 1761 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 MROH5Q6ZUA9 1318 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 KBTBD3Q8NAB2 608 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 TOMM22Q9NS69 142 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 MRC1P22897 1456 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 COL14A1Q05707 1796 aaKnown RBP7.1□□□□□ -1.27
VPS13D-202ENST00000460333 RGPD2P0DJD1 1756 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 RNF113AO15541 343 aaKnown RBP7.1□□□□□ -1.27
VPS13D-202ENST00000460333 GBP2P32456 591 aaPredicted RBP7.1□□□□□ -1.27
VPS13D-202ENST00000460333 FOSBP53539 338 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 ODF2Q5BJF6 829 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 RNF187Q5TA31 235 aaPredicted RBP7.1□□□□□ -1.27
VPS13D-202ENST00000460333 NFXL1Q6ZNB6 911 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 DDX46Q7L014 1031 aaKnown RBP7.1□□□□□ -1.27
VPS13D-202ENST00000460333 TMC6Q7Z403 805 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 NLRP10Q86W26 655 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 ANKRD18AQ8IVF6 992 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 HAUS7Q99871 368 aa7.1□□□□□ -1.27
VPS13D-202ENST00000460333 A0A1B0GUA9 196 aa7.09□□□□□ -1.27
VPS13D-202ENST00000460333 ERICH2A1L162 156 aa7.09□□□□□ -1.27
VPS13D-202ENST00000460333 CKAP4Q07065 602 aaKnown RBP7.09□□□□□ -1.27
VPS13D-202ENST00000460333 PLA2G12BQ9BX93 195 aa7.09□□□□□ -1.27
VPS13D-202ENST00000460333 TM6SF1Q9BZW5 370 aa7.09□□□□□ -1.27
VPS13D-202ENST00000460333 TNS2Q63HR2 1409 aa7.09□□□□□ -1.27
VPS13D-202ENST00000460333 PALLDQ8WX93 1383 aa7.09□□□□□ -1.27
VPS13D-202ENST00000460333 CEBPZQ03701 1054 aaKnown RBP7.09□□□□□ -1.27
VPS13D-202ENST00000460333 STIM1Q13586 685 aa7.09□□□□□ -1.27
VPS13D-202ENST00000460333 VPS53Q5VIR6 699 aa7.09□□□□□ -1.27
VPS13D-202ENST00000460333 TPTE2Q6XPS3 522 aa7.09□□□□□ -1.27
VPS13D-202ENST00000460333 NBPF5PQ86XG9 351 aaPredicted RBP7.09□□□□□ -1.27
VPS13D-202ENST00000460333 ZNF622Q969S3 477 aaKnown RBP eCLIP7.09□□□□□ -1.273e-6■□□□□ 8.7
VPS13D-202ENST00000460333 NLRP3Q96P20 1036 aa7.09□□□□□ -1.27
VPS13D-202ENST00000460333 VGLL3A8MV65 326 aa7.09□□□□□ -1.27
VPS13D-202ENST00000460333 OPA1O60313 960 aa7.09□□□□□ -1.27
VPS13D-202ENST00000460333 IDH1O75874 414 aaKnown RBP7.09□□□□□ -1.27
VPS13D-202ENST00000460333 CDKL5O76039 1030 aa7.09□□□□□ -1.27
VPS13D-202ENST00000460333 PUM3Q15397 648 aaKnown RBP7.09□□□□□ -1.27
VPS13D-202ENST00000460333 GIMAP6Q6P9H5 292 aa7.09□□□□□ -1.27
VPS13D-202ENST00000460333 HDXQ7Z353 690 aa7.09□□□□□ -1.27
VPS13D-202ENST00000460333 EHBP1Q8NDI1 1231 aa7.09□□□□□ -1.27
VPS13D-202ENST00000460333 TMOD2Q9NZR1 351 aa7.09□□□□□ -1.27
VPS13D-202ENST00000460333 CCNL1Q9UK58 526 aaPredicted RBP7.09□□□□□ -1.27
VPS13D-202ENST00000460333 RFX7Q2KHR2 1363 aa7.09□□□□□ -1.28
VPS13D-202ENST00000460333 TXLNAP40222 546 aa7.09□□□□□ -1.28
VPS13D-202ENST00000460333 EPHA10Q5JZY3 1008 aa7.09□□□□□ -1.28
VPS13D-202ENST00000460333 CREB3L3Q68CJ9 461 aa7.09□□□□□ -1.28
VPS13D-202ENST00000460333 CLEC4GQ6UXB4 293 aa7.09□□□□□ -1.28
VPS13D-202ENST00000460333 CKAP2LQ8IYA6 745 aa7.09□□□□□ -1.28
VPS13D-202ENST00000460333 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.09□□□□□ -1.28
VPS13D-202ENST00000460333 AIDAQ96BJ3 306 aa7.09□□□□□ -1.28
VPS13D-202ENST00000460333 ZSCAN16Q9H4T2 348 aaPredicted RBP7.09□□□□□ -1.28
VPS13D-202ENST00000460333 STRCP1A6NGW2 1772 aa7.09□□□□□ -1.28
VPS13D-202ENST00000460333 IGSF3O75054 1194 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 PTGS1P23219 599 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 TIMM10P62072 90 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 SART3Q15020 963 aaKnown RBP7.08□□□□□ -1.28
VPS13D-202ENST00000460333 GPR162Q16538 588 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 CCDC50Q8IVM0 306 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 XAGE2Q96GT9 111 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 NEK1Q96PY6 1258 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 GNG11P61952 73 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 ANO6Q4KMQ2 910 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 LPIN2Q92539 896 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 ZNF594Q96JF6 807 aaPredicted RBP7.08□□□□□ -1.28
VPS13D-202ENST00000460333 LRP2BPQ9P2M1 347 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 RGPD5Q99666 1765 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 SARNPP82979 210 aaKnown RBP7.08□□□□□ -1.28
VPS13D-202ENST00000460333 FOXO4P98177 505 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 TYRO3Q06418 890 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 FBXO41Q8TF61 875 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 RPGRQ92834 1020 aaKnown RBP7.08□□□□□ -1.28
VPS13D-202ENST00000460333 DBNLQ9UJU6 430 aaKnown RBP7.08□□□□□ -1.28
VPS13D-202ENST00000460333 SNX14Q9Y5W7 946 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms