RNA–Protein interactions for RNA: ENST00000448935.6

VIPAS39-203, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,623 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-203ENST00000448935 WDR33Q9C0J8 1336 aaKnown RBP12.54□□□□□ -0.4
VIPAS39-203ENST00000448935 GYS1P13807 737 aa12.54□□□□□ -0.4
VIPAS39-203ENST00000448935 PDE6AP16499 860 aa12.54□□□□□ -0.4
VIPAS39-203ENST00000448935 VPS37DQ86XT2 251 aa12.54□□□□□ -0.4
VIPAS39-203ENST00000448935 FLAD1Q8NFF5 587 aa12.54□□□□□ -0.4
VIPAS39-203ENST00000448935 UPF1Q92900 1129 aaKnown RBP eCLIP12.54□□□□□ -0.4
VIPAS39-203ENST00000448935 MS4A4AQ96JQ5 239 aa12.54□□□□□ -0.4
VIPAS39-203ENST00000448935 PUS7LQ9H0K6 701 aaKnown RBP12.54□□□□□ -0.4
VIPAS39-203ENST00000448935 DENND2AQ9ULE3 1009 aa12.54□□□□□ -0.4
VIPAS39-203ENST00000448935 MYO5AQ9Y4I1 1855 aaKnown RBP12.54□□□□□ -0.4
VIPAS39-203ENST00000448935 ZNF532Q9HCE3 1301 aa12.53□□□□□ -0.4
VIPAS39-203ENST00000448935 IGSF3O75054 1194 aa12.53□□□□□ -0.4
VIPAS39-203ENST00000448935 BAG4O95429 457 aaKnown RBP12.53□□□□□ -0.4
VIPAS39-203ENST00000448935 GNAT2P19087 354 aa12.53□□□□□ -0.4
VIPAS39-203ENST00000448935 BCAMP50895 628 aa12.53□□□□□ -0.4
VIPAS39-203ENST00000448935 FGD1P98174 961 aa12.53□□□□□ -0.4
VIPAS39-203ENST00000448935 GRAPQ13588 217 aa12.53□□□□□ -0.4
VIPAS39-203ENST00000448935 TMED8Q6PL24 325 aaPredicted RBP12.53□□□□□ -0.4
VIPAS39-203ENST00000448935 DHX32Q7L7V1 743 aaKnown RBP12.53□□□□□ -0.4
VIPAS39-203ENST00000448935 GRAPLQ8TC17 118 aaPredicted RBP12.53□□□□□ -0.4
VIPAS39-203ENST00000448935 AIDAQ96BJ3 306 aa12.53□□□□□ -0.4
VIPAS39-203ENST00000448935 TNRC6CQ9HCJ0 1690 aaKnown RBP12.53□□□□□ -0.4
VIPAS39-203ENST00000448935 MYH13Q9UKX3 1938 aa12.53□□□□□ -0.4
VIPAS39-203ENST00000448935 RGPD3A6NKT7 1758 aaPredicted RBP12.53□□□□□ -0.4
VIPAS39-203ENST00000448935 RGPD4Q7Z3J3 1758 aa12.53□□□□□ -0.4
VIPAS39-203ENST00000448935 PDS5AQ29RF7 1337 aaKnown RBP12.53□□□□□ -0.4
VIPAS39-203ENST00000448935 BRD1O95696 1058 aa12.52□□□□□ -0.4
VIPAS39-203ENST00000448935 TM4SF1P30408 202 aa12.52□□□□□ -0.4
VIPAS39-203ENST00000448935 SLFNL1Q499Z3 407 aa12.52□□□□□ -0.4
VIPAS39-203ENST00000448935 GPIHBP1Q8IV16 184 aa12.52□□□□□ -0.4
VIPAS39-203ENST00000448935 COL4A1P02462 1669 aa12.52□□□□□ -0.41
VIPAS39-203ENST00000448935 ZMYM6O95789 1325 aa12.52□□□□□ -0.41
VIPAS39-203ENST00000448935 TCRBV5S4A2TA0A5A2 114 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 E7EWF7 191 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 ZNF213O14771 459 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 SERPINB2P05120 415 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 TOB2Q14106 344 aaPredicted RBP12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 PRR5LQ6MZQ0 368 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 CCDC83Q8IWF9 413 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 RPGRQ92834 1020 aaKnown RBP12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 LRP2BPQ9P2M1 347 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 TPCN1Q9ULQ1 816 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 SNAP23O00161 211 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 TRAK2O60296 914 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 APBA3O96018 575 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 FGAP02671 866 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 PDCP20941 246 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 ALX1Q15699 326 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 ME3Q16798 604 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 Q6ZUG5 572 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 FBXO33Q7Z6M2 555 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 FBXL16Q8N461 479 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 MAGEB6Q8N7X4 407 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 RBM17Q96I25 401 aaKnown RBP12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 GPBP1L1Q9HC44 474 aaPredicted RBP12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 TFCP2L1Q9NZI6 479 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 WWC3Q9ULE0 1092 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 LEMD3Q9Y2U8 911 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 ATP6V1DQ9Y5K8 247 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 TAF6LQ9Y6J9 622 aa12.51□□□□□ -0.41
VIPAS39-203ENST00000448935 PNPLA7Q6ZV29 1317 aa12.5□□□□□ -0.41
VIPAS39-203ENST00000448935 WDR19Q8NEZ3 1342 aa12.5□□□□□ -0.41
VIPAS39-203ENST00000448935 PATL2C9JE40 543 aaKnown RBP12.5□□□□□ -0.41
VIPAS39-203ENST00000448935 HIBADHP31937 336 aaKnown RBP12.5□□□□□ -0.41
VIPAS39-203ENST00000448935 GYG1P46976 350 aa12.5□□□□□ -0.41
VIPAS39-203ENST00000448935 TRDNQ13061 729 aa12.5□□□□□ -0.41
VIPAS39-203ENST00000448935 RBM26Q5T8P6 1007 aaKnown RBP12.5□□□□□ -0.41
VIPAS39-203ENST00000448935 NLGN1Q8N2Q7 840 aa12.5□□□□□ -0.41
VIPAS39-203ENST00000448935 NCOA7Q8NI08 942 aa12.5□□□□□ -0.41
VIPAS39-203ENST00000448935 FAM84BQ96KN1 310 aaPredicted RBP12.5□□□□□ -0.41
VIPAS39-203ENST00000448935 STRBPQ96SI9 672 aaKnown RBP12.5□□□□□ -0.41
VIPAS39-203ENST00000448935 AGXT2Q9BYV1 514 aa12.5□□□□□ -0.41
VIPAS39-203ENST00000448935 NACAP1Q9BZK3 213 aa12.5□□□□□ -0.41
VIPAS39-203ENST00000448935 LARGE1O95461 756 aa12.49□□□□□ -0.41
VIPAS39-203ENST00000448935 APPP05067 770 aa12.49□□□□□ -0.41
VIPAS39-203ENST00000448935 DEKP35659 375 aaKnown RBP12.49□□□□□ -0.41
VIPAS39-203ENST00000448935 EXOSC10Q01780 885 aaKnown RBP12.49□□□□□ -0.41
VIPAS39-203ENST00000448935 PKP1Q13835 747 aa12.49□□□□□ -0.41
VIPAS39-203ENST00000448935 CRY2Q49AN0 593 aa12.49□□□□□ -0.41
VIPAS39-203ENST00000448935 STOX1Q6ZVD7 989 aa12.49□□□□□ -0.41
VIPAS39-203ENST00000448935 TMC4Q7Z404 712 aa12.49□□□□□ -0.41
VIPAS39-203ENST00000448935 RALYLQ86SE5 291 aaKnown RBP12.49□□□□□ -0.41
VIPAS39-203ENST00000448935 KRI1Q8N9T8 703 aaKnown RBP12.49□□□□□ -0.41
VIPAS39-203ENST00000448935 ZDHHC9Q9Y397 364 aa12.49□□□□□ -0.41
VIPAS39-203ENST00000448935 XDHP47989 1333 aa12.49□□□□□ -0.41
VIPAS39-203ENST00000448935 FOXP2O15409 715 aa12.48□□□□□ -0.41
VIPAS39-203ENST00000448935 STX6O43752 255 aa12.48□□□□□ -0.41
VIPAS39-203ENST00000448935 GJB2P29033 226 aa12.48□□□□□ -0.41
VIPAS39-203ENST00000448935 MCM5P33992 734 aa12.48□□□□□ -0.41
VIPAS39-203ENST00000448935 CCDC24Q8N4L8 307 aa12.48□□□□□ -0.41
VIPAS39-203ENST00000448935 TNS1Q9HBL0 1735 aaKnown RBP12.48□□□□□ -0.41
VIPAS39-203ENST00000448935 POLRMTO00411 1230 aaKnown RBP12.48□□□□□ -0.41
VIPAS39-203ENST00000448935 BBOX1O75936 387 aa12.48□□□□□ -0.41
VIPAS39-203ENST00000448935 MBD4O95243 580 aa12.48□□□□□ -0.41
VIPAS39-203ENST00000448935 MCTP1Q6DN14 999 aa12.48□□□□□ -0.41
VIPAS39-203ENST00000448935 TTLL5Q6EMB2 1281 aa12.48□□□□□ -0.41
VIPAS39-203ENST00000448935 BRF1Q92994 677 aa12.48□□□□□ -0.41
VIPAS39-203ENST00000448935 TCEANC2Q96MN5 208 aa12.48□□□□□ -0.41
VIPAS39-203ENST00000448935 LLPHQ9BRT6 129 aaKnown RBP12.48□□□□□ -0.41
VIPAS39-203ENST00000448935 NAPBQ9H115 298 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms