RNA–Protein interactions for RNA: ENST00000441443.6

SHOX2-203, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHOX2, Length 3,038 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-203ENST00000441443 SPTLC2O15270 562 aa23.41■■□□□ 1.34
SHOX2-203ENST00000441443 LMAN1P49257 510 aa23.41■■□□□ 1.34
SHOX2-203ENST00000441443 TFCP2Q12800 502 aa23.41■■□□□ 1.34
SHOX2-203ENST00000441443 HSP90AA4PQ58FG1 418 aa23.41■■□□□ 1.34
SHOX2-203ENST00000441443 IFNL2Q8IZJ0 200 aa23.41■■□□□ 1.34
SHOX2-203ENST00000441443 PARD6BQ9BYG5 372 aa23.41■■□□□ 1.34
SHOX2-203ENST00000441443 ARFGAP3Q9NP61 516 aa23.41■■□□□ 1.34
SHOX2-203ENST00000441443 CYP27B1O15528 508 aa23.41■■□□□ 1.34
SHOX2-203ENST00000441443 GPHNQ9NQX3 736 aaPredicted RBP23.41■■□□□ 1.34
SHOX2-203ENST00000441443 ATP8B1O43520 1251 aa23.41■■□□□ 1.34
SHOX2-203ENST00000441443 RASSF4Q9H2L5 321 aa23.41■■□□□ 1.34
SHOX2-203ENST00000441443 PPP2R2CQ9Y2T4 447 aa23.41■■□□□ 1.34
SHOX2-203ENST00000441443 HMGB1P09429 215 aaKnown RBP23.4■■□□□ 1.34
SHOX2-203ENST00000441443 CASQ1P31415 396 aa23.4■■□□□ 1.34
SHOX2-203ENST00000441443 EXOSC10Q01780 885 aaKnown RBP23.4■■□□□ 1.34
SHOX2-203ENST00000441443 PPP2R3AQ06190 1150 aa23.4■■□□□ 1.34
SHOX2-203ENST00000441443 DBNDD2Q9BQY9 259 aa23.4■■□□□ 1.34
SHOX2-203ENST00000441443 MYO1CO00159 1063 aa23.4■■□□□ 1.34
SHOX2-203ENST00000441443 GPR161Q8N6U8 529 aaKnown RBP23.4■■□□□ 1.34
SHOX2-203ENST00000441443 ZSWIM4Q9H7M6 989 aa23.4■■□□□ 1.34
SHOX2-203ENST00000441443 TOP1P11387 765 aaKnown RBP23.39■■□□□ 1.34
SHOX2-203ENST00000441443 CABP4P57796 275 aa23.39■■□□□ 1.34
SHOX2-203ENST00000441443 TNNI3KQ59H18 835 aa23.39■■□□□ 1.34
SHOX2-203ENST00000441443 RAB11FIP4Q86YS3 637 aa23.39■■□□□ 1.34
SHOX2-203ENST00000441443 ADAM21Q9UKJ8 722 aa23.39■■□□□ 1.34
SHOX2-203ENST00000441443 FPGT-TNNI3KV9GXZ4 949 aa23.39■■□□□ 1.34
SHOX2-203ENST00000441443 PFKFB1P16118 471 aa23.39■■□□□ 1.33
SHOX2-203ENST00000441443 MARCKSP29966 332 aaPredicted RBP23.39■■□□□ 1.33
SHOX2-203ENST00000441443 DHX8Q14562 1220 aaKnown RBP23.39■■□□□ 1.33
SHOX2-203ENST00000441443 KCNG4Q8TDN1 519 aa23.39■■□□□ 1.33
SHOX2-203ENST00000441443 FUT8Q9BYC5 575 aa23.39■■□□□ 1.33
SHOX2-203ENST00000441443 RGPD5Q99666 1765 aa23.39■■□□□ 1.33
SHOX2-203ENST00000441443 ZNF330Q9Y3S2 320 aaPredicted RBP23.38■■□□□ 1.33
SHOX2-203ENST00000441443 MED1Q15648 1581 aaPredicted RBP23.38■■□□□ 1.33
SHOX2-203ENST00000441443 USP54Q70EL1 1684 aa23.38■■□□□ 1.33
SHOX2-203ENST00000441443 H3BQF6 201 aa23.38■■□□□ 1.33
SHOX2-203ENST00000441443 ZSCAN12O43309 604 aa23.38■■□□□ 1.33
SHOX2-203ENST00000441443 UBE3BQ7Z3V4 1068 aa23.38■■□□□ 1.33
SHOX2-203ENST00000441443 E7EWF7 191 aa23.38■■□□□ 1.33
SHOX2-203ENST00000441443 MAP3K9P80192 1104 aa23.38■■□□□ 1.33
SHOX2-203ENST00000441443 ANKRD13DQ6ZTN6 518 aa23.38■■□□□ 1.33
SHOX2-203ENST00000441443 PDILTQ8N807 584 aa23.37■■□□□ 1.33
SHOX2-203ENST00000441443 ABCC6O95255 1503 aa23.37■■□□□ 1.33
SHOX2-203ENST00000441443 IKBKBO14920 756 aa23.37■■□□□ 1.33
SHOX2-203ENST00000441443 C8orf76Q96K31 380 aa23.37■■□□□ 1.33
SHOX2-203ENST00000441443 MPHOSPH8Q99549 860 aa23.37■■□□□ 1.33
SHOX2-203ENST00000441443 NCAPD2Q15021 1401 aa23.37■■□□□ 1.33
SHOX2-203ENST00000441443 NEURL1BA8MQ27 555 aa23.36■■□□□ 1.33
SHOX2-203ENST00000441443 VSTM4Q8IW00 320 aa23.36■■□□□ 1.33
SHOX2-203ENST00000441443 UTYO14607 1347 aa23.36■■□□□ 1.33
SHOX2-203ENST00000441443 KDM6AO15550 1401 aaPredicted RBP23.36■■□□□ 1.33
SHOX2-203ENST00000441443 MYSM1Q5VVJ2 828 aa23.36■■□□□ 1.33
SHOX2-203ENST00000441443 TMEM139Q8IV31 216 aa23.36■■□□□ 1.33
SHOX2-203ENST00000441443 AK7Q96M32 723 aa23.36■■□□□ 1.33
SHOX2-203ENST00000441443 MRFAP1Q9Y605 127 aa23.36■■□□□ 1.33
SHOX2-203ENST00000441443 KDM3BQ7LBC6 1761 aa23.36■■□□□ 1.33
SHOX2-203ENST00000441443 MROH7-TTC4A0A0A0MT08 1334 aa23.36■■□□□ 1.33
SHOX2-203ENST00000441443 ZNF142P52746 1687 aaPredicted RBP23.36■■□□□ 1.33
SHOX2-203ENST00000441443 MEGF6O75095 1541 aa23.36■■□□□ 1.33
SHOX2-203ENST00000441443 RSRC2Q7L4I2 434 aaKnown RBP23.35■■□□□ 1.33
SHOX2-203ENST00000441443 AGXT2Q9BYV1 514 aa23.35■■□□□ 1.33
SHOX2-203ENST00000441443 PRDM11Q9NQV5 511 aa23.35■■□□□ 1.33
SHOX2-203ENST00000441443 FANCLQ9NW38 375 aa23.35■■□□□ 1.33
SHOX2-203ENST00000441443 WDHD1O75717 1129 aaPredicted RBP23.35■■□□□ 1.33
SHOX2-203ENST00000441443 MYL5Q02045 173 aa23.35■■□□□ 1.33
SHOX2-203ENST00000441443 GCKRQ14397 625 aa23.35■■□□□ 1.33
SHOX2-203ENST00000441443 AXDND1Q5T1B0 1012 aaPredicted RBP23.35■■□□□ 1.33
SHOX2-203ENST00000441443 SYNE3Q6ZMZ3 975 aa23.35■■□□□ 1.33
SHOX2-203ENST00000441443 TOGARAM2Q6ZUX3 1019 aa23.35■■□□□ 1.33
SHOX2-203ENST00000441443 TOM1L2Q6ZVM7 507 aa23.35■■□□□ 1.33
SHOX2-203ENST00000441443 DHX58Q96C10 678 aa23.35■■□□□ 1.33
SHOX2-203ENST00000441443 POLR3EQ9NVU0 708 aa23.35■■□□□ 1.33
SHOX2-203ENST00000441443 SLIT3O75094 1523 aa23.35■■□□□ 1.33
SHOX2-203ENST00000441443 ADAMTSL3P82987 1691 aa23.35■■□□□ 1.33
SHOX2-203ENST00000441443 KIF28PB7ZC32 967 aa23.35■■□□□ 1.33
SHOX2-203ENST00000441443 YEATS4O95619 227 aa23.35■■□□□ 1.33
SHOX2-203ENST00000441443 SNRPA1P09661 255 aaKnown RBP23.35■■□□□ 1.33
SHOX2-203ENST00000441443 PNOCQ13519 176 aa23.35■■□□□ 1.33
SHOX2-203ENST00000441443 LONRF2Q1L5Z9 754 aa23.35■■□□□ 1.33
SHOX2-203ENST00000441443 ARHGAP6O43182 974 aa23.34■■□□□ 1.33
SHOX2-203ENST00000441443 CBFA2T2O43439 604 aa23.34■■□□□ 1.33
SHOX2-203ENST00000441443 TTLL5Q6EMB2 1281 aa23.34■■□□□ 1.33
SHOX2-203ENST00000441443 CADPS2Q86UW7 1296 aa23.34■■□□□ 1.33
SHOX2-203ENST00000441443 HEG1Q9ULI3 1381 aa23.34■■□□□ 1.33
SHOX2-203ENST00000441443 KARSQ15046 597 aaKnown RBP23.34■■□□□ 1.33
SHOX2-203ENST00000441443 ZNF274Q96GC6 653 aaPredicted RBP23.34■■□□□ 1.33
SHOX2-203ENST00000441443 DESI2Q9BSY9 194 aa23.34■■□□□ 1.33
SHOX2-203ENST00000441443 STRN4Q9NRL3 753 aa23.34■■□□□ 1.33
SHOX2-203ENST00000441443 LMO7Q8WWI1 1683 aa23.33■■□□□ 1.33
SHOX2-203ENST00000441443 GOLIM4O00461 696 aa23.33■■□□□ 1.33
SHOX2-203ENST00000441443 ADKP55263 362 aaKnown RBP23.33■■□□□ 1.33
SHOX2-203ENST00000441443 FBXO18Q8NFZ0 1043 aa23.33■■□□□ 1.33
SHOX2-203ENST00000441443 HAUS7Q99871 368 aa23.33■■□□□ 1.33
SHOX2-203ENST00000441443 BAG1Q99933 345 aaPredicted RBP23.33■■□□□ 1.33
SHOX2-203ENST00000441443 GOLGA5Q8TBA6 731 aa23.33■■□□□ 1.33
SHOX2-203ENST00000441443 IRX2Q9BZI1 471 aaPredicted RBP23.33■■□□□ 1.33
SHOX2-203ENST00000441443 INTS13Q9NVM9 706 aa23.33■■□□□ 1.33
SHOX2-203ENST00000441443 CWC15Q9P013 229 aaKnown RBP23.33■■□□□ 1.33
SHOX2-203ENST00000441443 MCM6Q14566 821 aa23.33■■□□□ 1.32
SHOX2-203ENST00000441443 SYKP43405 635 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms