RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 ZSCAN20P17040 1043 aaPredicted RBP16.63■□□□□ 0.25
LIMD1-202ENST00000440097 NOLC1Q14978 699 aaKnown RBP eCLIP16.63■□□□□ 0.25
LIMD1-202ENST00000440097 LRP2BPQ9P2M1 347 aa16.63■□□□□ 0.25
LIMD1-202ENST00000440097 BTAF1O14981 1849 aa16.63■□□□□ 0.25
LIMD1-202ENST00000440097 CCT2P78371 535 aaKnown RBP16.62■□□□□ 0.25
LIMD1-202ENST00000440097 UBE3CQ15386 1083 aa16.62■□□□□ 0.25
LIMD1-202ENST00000440097 UTP14CQ5TAP6 766 aaKnown RBP16.62■□□□□ 0.25
LIMD1-202ENST00000440097 TPTE2Q6XPS3 522 aa16.62■□□□□ 0.25
LIMD1-202ENST00000440097 FAM184AQ8NB25 1140 aa16.62■□□□□ 0.25
LIMD1-202ENST00000440097 ABCF2Q9UG63 623 aa16.62■□□□□ 0.25
LIMD1-202ENST00000440097 USP25Q9UHP3 1055 aa16.62■□□□□ 0.25
LIMD1-202ENST00000440097 DDX60Q8IY21 1712 aaKnown RBP16.62■□□□□ 0.25
LIMD1-202ENST00000440097 FOXP2O15409 715 aa16.62■□□□□ 0.25
LIMD1-202ENST00000440097 PPFIA3O75145 1194 aa16.62■□□□□ 0.25
LIMD1-202ENST00000440097 AMIGO3Q86WK7 504 aa16.62■□□□□ 0.25
LIMD1-202ENST00000440097 TTC12Q9H892 705 aaPredicted RBP16.62■□□□□ 0.25
LIMD1-202ENST00000440097 RTL9Q8NET4 1388 aa16.62■□□□□ 0.25
LIMD1-202ENST00000440097 GYG1P46976 350 aa16.61■□□□□ 0.25
LIMD1-202ENST00000440097 TRDNQ13061 729 aa16.61■□□□□ 0.25
LIMD1-202ENST00000440097 FAM196AQ6ZSG2 479 aa16.61■□□□□ 0.25
LIMD1-202ENST00000440097 CDC37L1Q7L3B6 337 aa16.61■□□□□ 0.25
LIMD1-202ENST00000440097 CELF1Q92879 486 aaKnown RBP16.61■□□□□ 0.25
LIMD1-202ENST00000440097 AKAP11Q9UKA4 1901 aa16.61■□□□□ 0.25
LIMD1-202ENST00000440097 HMGN5P82970 282 aaKnown RBP16.61■□□□□ 0.25
LIMD1-202ENST00000440097 DNM1Q05193 864 aaKnown RBP16.61■□□□□ 0.25
LIMD1-202ENST00000440097 SF3B3Q15393 1217 aaKnown RBP16.61■□□□□ 0.25
LIMD1-202ENST00000440097 TRAPPC3LQ5T215 181 aa16.61■□□□□ 0.25
LIMD1-202ENST00000440097 WTIPA6NIX2 430 aaPredicted RBP16.6■□□□□ 0.25
LIMD1-202ENST00000440097 H3BQV1 296 aa16.6■□□□□ 0.25
LIMD1-202ENST00000440097 FOSBP53539 338 aa16.6■□□□□ 0.25
LIMD1-202ENST00000440097 CBX1P83916 185 aa16.6■□□□□ 0.25
LIMD1-202ENST00000440097 SCRN1Q12765 414 aa16.6■□□□□ 0.25
LIMD1-202ENST00000440097 IFFO2Q5TF58 517 aa16.6■□□□□ 0.25
LIMD1-202ENST00000440097 CICQ96RK0 1608 aaPredicted RBP16.6■□□□□ 0.25
LIMD1-202ENST00000440097 GTF2F1P35269 517 aaKnown RBP eCLIP16.6■□□□□ 0.25
LIMD1-202ENST00000440097 CAVIN4Q5BKX8 364 aa16.6■□□□□ 0.25
LIMD1-202ENST00000440097 BSDC1Q9NW68 430 aaPredicted RBP16.6■□□□□ 0.25
LIMD1-202ENST00000440097 LRP5O75197 1615 aa16.6■□□□□ 0.25
LIMD1-202ENST00000440097 MBD4O95243 580 aa16.6■□□□□ 0.25
LIMD1-202ENST00000440097 EXOSC10Q01780 885 aaKnown RBP16.6■□□□□ 0.25
LIMD1-202ENST00000440097 NCOA7Q8NI08 942 aa16.6■□□□□ 0.25
LIMD1-202ENST00000440097 NCOA5Q9HCD5 579 aaKnown RBP16.6■□□□□ 0.25
LIMD1-202ENST00000440097 GNL3LQ9NVN8 582 aaKnown RBP16.6■□□□□ 0.25
LIMD1-202ENST00000440097 TCHHQ07283 1943 aa16.59■□□□□ 0.25
LIMD1-202ENST00000440097 ADCY5O95622 1261 aa16.59■□□□□ 0.25
LIMD1-202ENST00000440097 UVSSAQ2YD98 709 aa16.59■□□□□ 0.25
LIMD1-202ENST00000440097 MINPP1Q9UNW1 487 aa16.59■□□□□ 0.25
LIMD1-202ENST00000440097 BCORQ6W2J9 1755 aa16.59■□□□□ 0.25
LIMD1-202ENST00000440097 PRC1O43663 620 aa16.59■□□□□ 0.25
LIMD1-202ENST00000440097 FAM173BQ6P4H8 233 aa16.59■□□□□ 0.25
LIMD1-202ENST00000440097 ARMT1Q9H993 441 aa16.59■□□□□ 0.25
LIMD1-202ENST00000440097 GPHNQ9NQX3 736 aaPredicted RBP16.59■□□□□ 0.25
LIMD1-202ENST00000440097 MYH7P12883 1935 aa16.58■□□□□ 0.25
LIMD1-202ENST00000440097 RPS8P62241 208 aaKnown RBP16.58■□□□□ 0.25
LIMD1-202ENST00000440097 MIGA1Q8NAN2 632 aa16.58■□□□□ 0.25
LIMD1-202ENST00000440097 NAPBQ9H115 298 aa16.58■□□□□ 0.25
LIMD1-202ENST00000440097 RAI14Q9P0K7 980 aa16.58■□□□□ 0.25
LIMD1-202ENST00000440097 MYO5AQ9Y4I1 1855 aaKnown RBP16.58■□□□□ 0.24
LIMD1-202ENST00000440097 THSD7AQ9UPZ6 1657 aa16.58■□□□□ 0.24
LIMD1-202ENST00000440097 PPP4R3BQ5MIZ7 849 aa16.58■□□□□ 0.24
LIMD1-202ENST00000440097 TCRBV5S4A2TA0A5A2 114 aa16.57■□□□□ 0.24
LIMD1-202ENST00000440097 RAB11FIP4Q86YS3 637 aa16.57■□□□□ 0.24
LIMD1-202ENST00000440097 KIF3AQ9Y496 699 aa16.57■□□□□ 0.24
LIMD1-202ENST00000440097 TAF1P21675 1872 aa16.57■□□□□ 0.24
LIMD1-202ENST00000440097 PFKFB2O60825 505 aa16.57■□□□□ 0.24
LIMD1-202ENST00000440097 PDIA4P13667 645 aaKnown RBP16.57■□□□□ 0.24
LIMD1-202ENST00000440097 STRBPQ96SI9 672 aaKnown RBP16.57■□□□□ 0.24
LIMD1-202ENST00000440097 NHSQ6T4R5 1651 aa16.56■□□□□ 0.24
LIMD1-202ENST00000440097 UBE4AQ14139 1066 aa16.56■□□□□ 0.24
LIMD1-202ENST00000440097 SLC10A5Q5PT55 438 aa16.56■□□□□ 0.24
LIMD1-202ENST00000440097 STK11IPQ8N1F8 1099 aa16.56■□□□□ 0.24
LIMD1-202ENST00000440097 ZNF831Q5JPB2 1677 aa16.56■□□□□ 0.24
LIMD1-202ENST00000440097 PTPDC1A2A3K4 754 aa16.56■□□□□ 0.24
LIMD1-202ENST00000440097 TRIM37O94972 964 aa16.56■□□□□ 0.24
LIMD1-202ENST00000440097 PDIA3P30101 505 aaKnown RBP16.56■□□□□ 0.24
LIMD1-202ENST00000440097 BCL11BQ9C0K0 894 aaPredicted RBP16.56■□□□□ 0.24
LIMD1-202ENST00000440097 TOMM22Q9NS69 142 aa16.56■□□□□ 0.24
LIMD1-202ENST00000440097 LRRC4BQ9NT99 713 aa16.56■□□□□ 0.24
LIMD1-202ENST00000440097 SPTLC3Q9NUV7 552 aa16.56■□□□□ 0.24
LIMD1-202ENST00000440097 TAOK2Q9UL54 1235 aa16.56■□□□□ 0.24
LIMD1-202ENST00000440097 LAMA4Q16363 1823 aa16.56■□□□□ 0.24
LIMD1-202ENST00000440097 COL4A1P02462 1669 aa16.56■□□□□ 0.24
LIMD1-202ENST00000440097 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.55■□□□□ 0.24
LIMD1-202ENST00000440097 KLF18A0A0U1RQI7 1052 aa16.55■□□□□ 0.24
LIMD1-202ENST00000440097 TDO2P48775 406 aa16.55■□□□□ 0.24
LIMD1-202ENST00000440097 KRT85P78386 507 aa16.55■□□□□ 0.24
LIMD1-202ENST00000440097 GOLGA8BA8MQT2 603 aa16.55■□□□□ 0.24
LIMD1-202ENST00000440097 CYP7A1P22680 504 aa16.55■□□□□ 0.24
LIMD1-202ENST00000440097 CCDC183Q5T5S1 534 aa16.55■□□□□ 0.24
LIMD1-202ENST00000440097 SLC4A4Q9Y6R1 1079 aa16.55■□□□□ 0.24
LIMD1-202ENST00000440097 TBC1D10CQ8IV04 446 aa16.55■□□□□ 0.24
LIMD1-202ENST00000440097 CNBD1Q8NA66 436 aa16.55■□□□□ 0.24
LIMD1-202ENST00000440097 TFCP2L1Q9NZI6 479 aa16.55■□□□□ 0.24
LIMD1-202ENST00000440097 DENND2AQ9ULE3 1009 aa16.55■□□□□ 0.24
LIMD1-202ENST00000440097 LAMB2P55268 1798 aa16.54■□□□□ 0.24
LIMD1-202ENST00000440097 ATRNO75882 1429 aa16.54■□□□□ 0.24
LIMD1-202ENST00000440097 A0A0U1RQG5 324 aaPredicted RBP16.54■□□□□ 0.24
LIMD1-202ENST00000440097 PATL2C9JE40 543 aaKnown RBP16.54■□□□□ 0.24
LIMD1-202ENST00000440097 RGL2O15211 777 aa16.54■□□□□ 0.24
LIMD1-202ENST00000440097 PRKAB2O43741 272 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 112.8 ms