RNA–Protein interactions for RNA: ENST00000439128.6

NEK1-201, Transcript of NIMA related kinase 1, humanhuman

TSL 1 (best) BASIC

Gene NEK1, Length 5,653 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-201ENST00000439128 CCDC93Q567U6 631 aa13.78□□□□□ -0.2
NEK1-201ENST00000439128 RRAGBQ5VZM2 374 aa13.78□□□□□ -0.2
NEK1-201ENST00000439128 CCDC102BQ68D86 513 aa13.78□□□□□ -0.2
NEK1-201ENST00000439128 METP08581 1390 aa13.78□□□□□ -0.2
NEK1-201ENST00000439128 LMAN1P49257 510 aa13.78□□□□□ -0.2
NEK1-201ENST00000439128 HSP90AA2PQ14568 343 aaPredicted RBP13.78□□□□□ -0.2
NEK1-201ENST00000439128 DBNDD2Q9BQY9 259 aa13.78□□□□□ -0.2
NEK1-201ENST00000439128 NBPF3Q9H094 633 aa13.78□□□□□ -0.2
NEK1-201ENST00000439128 RMND1Q9NWS8 449 aa13.78□□□□□ -0.2
NEK1-201ENST00000439128 MRPS9P82933 396 aaKnown RBP13.77□□□□□ -0.2
NEK1-201ENST00000439128 CEP85Q6P2H3 762 aa13.77□□□□□ -0.2
NEK1-201ENST00000439128 SUCLG2Q96I99 432 aa13.77□□□□□ -0.2
NEK1-201ENST00000439128 TESK2Q96S53 571 aa13.77□□□□□ -0.2
NEK1-201ENST00000439128 ERFEQ4G0M1 354 aa13.77□□□□□ -0.2
NEK1-201ENST00000439128 GSTTP1A0A1W2PQM5 241 aa13.77□□□□□ -0.21
NEK1-201ENST00000439128 BMP2KLQ5H9B9 411 aa13.77□□□□□ -0.21
NEK1-201ENST00000439128 TTLL7Q6ZT98 887 aa13.77□□□□□ -0.21
NEK1-201ENST00000439128 HOOK3Q86VS8 718 aa13.77□□□□□ -0.21
NEK1-201ENST00000439128 SSX2IPQ9Y2D8 614 aa13.77□□□□□ -0.21
NEK1-201ENST00000439128 EN1Q05925 392 aaPredicted RBP13.77□□□□□ -0.21
NEK1-201ENST00000439128 RGS22Q8NE09 1264 aa13.77□□□□□ -0.21
NEK1-201ENST00000439128 USP19O94966 1318 aa13.77□□□□□ -0.21
NEK1-201ENST00000439128 YEATS4O95619 227 aa13.77□□□□□ -0.21
NEK1-201ENST00000439128 EZRP15311 586 aaKnown RBP13.77□□□□□ -0.21
NEK1-201ENST00000439128 NAP1L4Q99733 375 aaKnown RBP13.77□□□□□ -0.21
NEK1-201ENST00000439128 DBNDD1Q9H9R9 158 aa13.77□□□□□ -0.21
NEK1-201ENST00000439128 B4E1Z4 1266 aa13.76□□□□□ -0.21
NEK1-201ENST00000439128 CFBP00751 764 aa13.76□□□□□ -0.21
NEK1-201ENST00000439128 TOP1P11387 765 aaKnown RBP13.76□□□□□ -0.21
NEK1-201ENST00000439128 EIF4A1P60842 406 aaKnown RBP13.76□□□□□ -0.21
NEK1-201ENST00000439128 NUCB1Q02818 461 aa13.76□□□□□ -0.21
NEK1-201ENST00000439128 APOBRQ0VD83 1088 aa13.76□□□□□ -0.21
NEK1-201ENST00000439128 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.76□□□□□ -0.21
NEK1-201ENST00000439128 MAPKBP1O60336 1514 aa13.76□□□□□ -0.21
NEK1-201ENST00000439128 WDR17Q8IZU2 1322 aa13.76□□□□□ -0.21
NEK1-201ENST00000439128 LETM2Q2VYF4 491 aa13.76□□□□□ -0.21
NEK1-201ENST00000439128 HELLSQ9NRZ9 838 aa13.76□□□□□ -0.21
NEK1-201ENST00000439128 CIZ1Q9ULV3 898 aaPredicted RBP13.76□□□□□ -0.21
NEK1-201ENST00000439128 THRAP3Q9Y2W1 955 aaKnown RBP13.76□□□□□ -0.21
NEK1-201ENST00000439128 KDM5DQ9BY66 1539 aa13.76□□□□□ -0.21
NEK1-201ENST00000439128 CCDC169A6NNP5 214 aa13.76□□□□□ -0.21
NEK1-201ENST00000439128 RAD17O75943 681 aa13.76□□□□□ -0.21
NEK1-201ENST00000439128 GYG1P46976 350 aa13.76□□□□□ -0.21
NEK1-201ENST00000439128 PIM2Q9P1W9 311 aa13.76□□□□□ -0.21
NEK1-201ENST00000439128 TMCO5BA8MYB1 307 aa13.76□□□□□ -0.21
NEK1-201ENST00000439128 TAF3Q5VWG9 929 aa13.76□□□□□ -0.21
NEK1-201ENST00000439128 PLIN2Q99541 437 aa13.76□□□□□ -0.21
NEK1-201ENST00000439128 KCNQ3O43525 872 aa13.75□□□□□ -0.21
NEK1-201ENST00000439128 MMP10P09238 476 aa13.75□□□□□ -0.21
NEK1-201ENST00000439128 ESYT1Q9BSJ8 1104 aa13.75□□□□□ -0.21
NEK1-201ENST00000439128 TRIM75PA6NK02 468 aa13.75□□□□□ -0.21
NEK1-201ENST00000439128 ZMYND15Q9H091 742 aa13.75□□□□□ -0.21
NEK1-201ENST00000439128 MAGI2Q86UL8 1455 aa13.75□□□□□ -0.21
NEK1-201ENST00000439128 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.75□□□□□ -0.21
NEK1-201ENST00000439128 HSPA1LP34931 641 aa13.75□□□□□ -0.21
NEK1-201ENST00000439128 NOP2P46087 812 aaKnown RBP13.75□□□□□ -0.21
NEK1-201ENST00000439128 LRRC45Q96CN5 670 aa13.75□□□□□ -0.21
NEK1-201ENST00000439128 CLIP2Q9UDT6 1046 aa13.75□□□□□ -0.21
NEK1-201ENST00000439128 CTAGE5O15320 804 aa13.75□□□□□ -0.21
NEK1-201ENST00000439128 CCDC172P0C7W6 258 aa13.75□□□□□ -0.21
NEK1-201ENST00000439128 FAM193AP78312 1265 aa13.75□□□□□ -0.21
NEK1-201ENST00000439128 CCDC129Q6ZRS4 1044 aa13.75□□□□□ -0.21
NEK1-201ENST00000439128 TTLL6Q8N841 843 aa13.75□□□□□ -0.21
NEK1-201ENST00000439128 USO1O60763 962 aaKnown RBP13.75□□□□□ -0.21
NEK1-201ENST00000439128 PRPF4BQ13523 1007 aaKnown RBP13.75□□□□□ -0.21
NEK1-201ENST00000439128 IL27Q8NEV9 243 aa13.75□□□□□ -0.21
NEK1-201ENST00000439128 SYCE3A1L190 88 aa13.74□□□□□ -0.21
NEK1-201ENST00000439128 MARCKSP29966 332 aaPredicted RBP13.74□□□□□ -0.21
NEK1-201ENST00000439128 SUPT20HL1Q3ZLR7 823 aa13.74□□□□□ -0.21
NEK1-201ENST00000439128 HS2ST1Q7LGA3 356 aa13.74□□□□□ -0.21
NEK1-201ENST00000439128 DPP9Q86TI2 863 aa13.74□□□□□ -0.21
NEK1-201ENST00000439128 FAM43AQ8N2R8 423 aa13.74□□□□□ -0.21
NEK1-201ENST00000439128 DNM2P50570 870 aa13.74□□□□□ -0.21
NEK1-201ENST00000439128 IFT74Q96LB3 600 aa13.74□□□□□ -0.21
NEK1-201ENST00000439128 SORBS3O60504 671 aa13.74□□□□□ -0.21
NEK1-201ENST00000439128 SYKP43405 635 aa13.74□□□□□ -0.21
NEK1-201ENST00000439128 RNF169Q8NCN4 708 aa13.74□□□□□ -0.21
NEK1-201ENST00000439128 OSBPP22059 807 aa13.74□□□□□ -0.21
NEK1-201ENST00000439128 ACTN2P35609 894 aa13.74□□□□□ -0.21
NEK1-201ENST00000439128 CTDSPL2Q05D32 466 aa13.74□□□□□ -0.21
NEK1-201ENST00000439128 MLXIPQ9HAP2 919 aa13.74□□□□□ -0.21
NEK1-201ENST00000439128 MAP3K15Q6ZN16 1313 aa13.73□□□□□ -0.21
NEK1-201ENST00000439128 ZNF771Q7L3S4 317 aaPredicted RBP13.73□□□□□ -0.21
NEK1-201ENST00000439128 GLG1Q92896 1179 aa13.73□□□□□ -0.21
NEK1-201ENST00000439128 SPAG5Q96R06 1193 aa13.73□□□□□ -0.21
NEK1-201ENST00000439128 ZBTB1Q9Y2K1 713 aa13.73□□□□□ -0.21
NEK1-201ENST00000439128 DNMT1P26358 1616 aaKnown RBP13.73□□□□□ -0.21
NEK1-201ENST00000439128 IGHDP01880 384 aa13.73□□□□□ -0.21
NEK1-201ENST00000439128 ANKRD35Q8N283 1001 aa13.73□□□□□ -0.21
NEK1-201ENST00000439128 DHX58Q96C10 678 aa13.73□□□□□ -0.21
NEK1-201ENST00000439128 ZSCAN16Q9H4T2 348 aaPredicted RBP13.73□□□□□ -0.21
NEK1-201ENST00000439128 GDPD2Q9HCC8 539 aa13.73□□□□□ -0.21
NEK1-201ENST00000439128 DKC1O60832 514 aaKnown RBP eCLIP13.73□□□□□ -0.21
NEK1-201ENST00000439128 ALAS1P13196 640 aa13.73□□□□□ -0.21
NEK1-201ENST00000439128 ZAP70P43403 619 aa13.73□□□□□ -0.21
NEK1-201ENST00000439128 STRN3Q13033 797 aa13.73□□□□□ -0.21
NEK1-201ENST00000439128 SRP68Q9UHB9 627 aaKnown RBP13.73□□□□□ -0.21
NEK1-201ENST00000439128 GPAA1O43292 621 aa13.73□□□□□ -0.21
NEK1-201ENST00000439128 SSFA2P28290 1259 aa13.73□□□□□ -0.21
NEK1-201ENST00000439128 MAEAQ7L5Y9 396 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms