RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 CELF2O95319 508 aaKnown RBP14.09□□□□□ -0.15
COL28A1-203ENST00000435823 FMR1Q06787 632 aaKnown RBP eCLIP14.09□□□□□ -0.15
COL28A1-203ENST00000435823 TNNI3KQ59H18 835 aa14.09□□□□□ -0.15
COL28A1-203ENST00000435823 ZNF408Q9H9D4 720 aa14.09□□□□□ -0.15
COL28A1-203ENST00000435823 ABT1Q9ULW3 272 aaKnown RBP14.09□□□□□ -0.15
COL28A1-203ENST00000435823 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.09□□□□□ -0.15
COL28A1-203ENST00000435823 FPGT-TNNI3KV9GXZ4 949 aa14.09□□□□□ -0.15
COL28A1-203ENST00000435823 POLR2AP24928 1970 aaKnown RBP14.09□□□□□ -0.15
COL28A1-203ENST00000435823 ADM5C9JUS6 153 aa14.08□□□□□ -0.16
COL28A1-203ENST00000435823 HDLBPQ00341 1268 aaKnown RBP14.08□□□□□ -0.16
COL28A1-203ENST00000435823 APOBEC3FQ8IUX4 373 aaKnown RBP14.08□□□□□ -0.16
COL28A1-203ENST00000435823 ZGPATQ8N5A5 531 aaKnown RBP14.08□□□□□ -0.16
COL28A1-203ENST00000435823 ZBED3Q96IU2 234 aaPredicted RBP14.08□□□□□ -0.16
COL28A1-203ENST00000435823 PDS5AQ29RF7 1337 aaKnown RBP14.08□□□□□ -0.16
COL28A1-203ENST00000435823 COL1A1P02452 1464 aaPredicted RBP14.07□□□□□ -0.16
COL28A1-203ENST00000435823 SPDYE2BA6NHP3 402 aa14.07□□□□□ -0.16
COL28A1-203ENST00000435823 UQCRFS1P1P0C7P4 283 aa14.07□□□□□ -0.16
COL28A1-203ENST00000435823 SPDYE6P0CI01 402 aa14.07□□□□□ -0.16
COL28A1-203ENST00000435823 CRKP46108 304 aa14.07□□□□□ -0.16
COL28A1-203ENST00000435823 RASGRF1Q13972 1273 aa14.07□□□□□ -0.16
COL28A1-203ENST00000435823 CCDC158Q5M9N0 1113 aa14.07□□□□□ -0.16
COL28A1-203ENST00000435823 SIRT2Q8IXJ6 389 aa14.07□□□□□ -0.16
COL28A1-203ENST00000435823 TEKT1Q969V4 418 aa14.07□□□□□ -0.16
COL28A1-203ENST00000435823 KLRG1Q96E93 195 aa14.07□□□□□ -0.16
COL28A1-203ENST00000435823 SALL1Q9NSC2 1324 aa14.07□□□□□ -0.16
COL28A1-203ENST00000435823 ECM29Q5VYK3 1845 aa14.06□□□□□ -0.16
COL28A1-203ENST00000435823 RAB11FIP3O75154 756 aa14.06□□□□□ -0.16
COL28A1-203ENST00000435823 LDHBP07195 334 aaKnown RBP14.06□□□□□ -0.16
COL28A1-203ENST00000435823 GRIK5Q16478 980 aa14.06□□□□□ -0.16
COL28A1-203ENST00000435823 TTC39AQ5SRH9 613 aa14.06□□□□□ -0.16
COL28A1-203ENST00000435823 CST9Q5W186 159 aa14.06□□□□□ -0.16
COL28A1-203ENST00000435823 DNAJC5GQ8N7S2 189 aa14.06□□□□□ -0.16
COL28A1-203ENST00000435823 KIF1BPQ96EK5 621 aa14.06□□□□□ -0.16
COL28A1-203ENST00000435823 CDCA5Q96FF9 252 aa14.06□□□□□ -0.16
COL28A1-203ENST00000435823 PRMT6Q96LA8 375 aaPredicted RBP14.06□□□□□ -0.16
COL28A1-203ENST00000435823 DBNDD2Q9BQY9 259 aa14.06□□□□□ -0.16
COL28A1-203ENST00000435823 APBB1O00213 710 aa14.05□□□□□ -0.16
COL28A1-203ENST00000435823 ARID4AP29374 1257 aaPredicted RBP14.05□□□□□ -0.16
COL28A1-203ENST00000435823 DEFB115Q30KQ5 88 aa14.05□□□□□ -0.16
COL28A1-203ENST00000435823 SPTY2D1Q68D10 685 aaPredicted RBP14.05□□□□□ -0.16
COL28A1-203ENST00000435823 DLK2Q6UY11 383 aa14.05□□□□□ -0.16
COL28A1-203ENST00000435823 CLASRPQ8N2M8 674 aaKnown RBP14.05□□□□□ -0.16
COL28A1-203ENST00000435823 RHPN1Q8TCX5 695 aa14.05□□□□□ -0.16
COL28A1-203ENST00000435823 CRBNQ96SW2 442 aa14.05□□□□□ -0.16
COL28A1-203ENST00000435823 MRIQ9BWK5 157 aa14.05□□□□□ -0.16
COL28A1-203ENST00000435823 CCDC8Q9H0W5 538 aaPredicted RBP14.05□□□□□ -0.16
COL28A1-203ENST00000435823 VEZTQ9HBM0 779 aa14.05□□□□□ -0.16
COL28A1-203ENST00000435823 ABCF2Q9UG63 623 aa14.05□□□□□ -0.16
COL28A1-203ENST00000435823 MKRN1Q9UHC7 482 aaKnown RBP14.05□□□□□ -0.16
COL28A1-203ENST00000435823 PCDHAC2Q9Y5I4 1007 aa14.05□□□□□ -0.16
COL28A1-203ENST00000435823 CLRN2A0PK11 232 aa14.04□□□□□ -0.16
COL28A1-203ENST00000435823 NF2P35240 595 aa14.04□□□□□ -0.16
COL28A1-203ENST00000435823 HHIPL2Q6UWX4 724 aa14.04□□□□□ -0.16
COL28A1-203ENST00000435823 AACSQ86V21 672 aa14.04□□□□□ -0.16
COL28A1-203ENST00000435823 DZIP1Q86YF9 867 aaKnown RBP14.04□□□□□ -0.16
COL28A1-203ENST00000435823 C2orf69Q8N8R5 385 aa14.04□□□□□ -0.16
COL28A1-203ENST00000435823 SPATA5Q8NB90 893 aa14.04□□□□□ -0.16
COL28A1-203ENST00000435823 EAF2Q96CJ1 260 aaPredicted RBP14.04□□□□□ -0.16
COL28A1-203ENST00000435823 GBA2Q9HCG7 927 aaPredicted RBP14.04□□□□□ -0.16
COL28A1-203ENST00000435823 IL1RAPL2Q9NP60 686 aa14.04□□□□□ -0.16
COL28A1-203ENST00000435823 HMG20BQ9P0W2 317 aa14.04□□□□□ -0.16
COL28A1-203ENST00000435823 DBNLQ9UJU6 430 aaKnown RBP14.04□□□□□ -0.16
COL28A1-203ENST00000435823 SCAF8Q9UPN6 1271 aaKnown RBP14.04□□□□□ -0.16
COL28A1-203ENST00000435823 PPP2R3BQ9Y5P8 575 aa14.04□□□□□ -0.16
COL28A1-203ENST00000435823 TLL2Q9Y6L7 1015 aa14.04□□□□□ -0.16
COL28A1-203ENST00000435823 CNTNAP1P78357 1384 aa14.04□□□□□ -0.16
COL28A1-203ENST00000435823 RASSF10A6NK89 507 aa14.03□□□□□ -0.16
COL28A1-203ENST00000435823 PRDX5P30044 214 aa14.03□□□□□ -0.16
COL28A1-203ENST00000435823 TNFAIP1Q13829 316 aa14.03□□□□□ -0.16
COL28A1-203ENST00000435823 PAXIP1Q6ZW49 1069 aaPredicted RBP14.03□□□□□ -0.16
COL28A1-203ENST00000435823 ERICH6Q7L0X2 663 aa14.03□□□□□ -0.16
COL28A1-203ENST00000435823 SLF2Q8IX21 1173 aa14.03□□□□□ -0.16
COL28A1-203ENST00000435823 ZDHHC15Q96MV8 337 aa14.03□□□□□ -0.16
COL28A1-203ENST00000435823 TDRD3Q9H7E2 651 aaKnown RBP14.03□□□□□ -0.16
COL28A1-203ENST00000435823 TMOD2Q9NZR1 351 aa14.03□□□□□ -0.16
COL28A1-203ENST00000435823 ZNF70Q9UC06 446 aaPredicted RBP14.03□□□□□ -0.16
COL28A1-203ENST00000435823 IFIT2P09913 472 aaKnown RBP14.02□□□□□ -0.17
COL28A1-203ENST00000435823 MCAMP43121 646 aa14.02□□□□□ -0.17
COL28A1-203ENST00000435823 TNNI2P48788 182 aa14.02□□□□□ -0.17
COL28A1-203ENST00000435823 SPDYE2Q495Y8 402 aa14.02□□□□□ -0.17
COL28A1-203ENST00000435823 SAPCD2Q86UD0 394 aa14.02□□□□□ -0.17
COL28A1-203ENST00000435823 ZNF512BQ96KM6 892 aaPredicted RBP14.02□□□□□ -0.17
COL28A1-203ENST00000435823 DEFB129Q9H1M3 183 aa14.02□□□□□ -0.17
COL28A1-203ENST00000435823 TLR7Q9NYK1 1049 aaKnown RBP14.02□□□□□ -0.17
COL28A1-203ENST00000435823 CEP350Q5VT06 3117 aa14.01□□□□□ -0.17
COL28A1-203ENST00000435823 AOX1Q06278 1338 aa14.01□□□□□ -0.17
COL28A1-203ENST00000435823 ECE1P42892 770 aa14.01□□□□□ -0.17
COL28A1-203ENST00000435823 HUNKP57058 714 aa14.01□□□□□ -0.17
COL28A1-203ENST00000435823 FKBP1BP68106 108 aa14.01□□□□□ -0.17
COL28A1-203ENST00000435823 AAMPQ13685 434 aa14.01□□□□□ -0.17
COL28A1-203ENST00000435823 PRAMEF18Q5VWM3 479 aa14.01□□□□□ -0.17
COL28A1-203ENST00000435823 PI16Q6UXB8 463 aa14.01□□□□□ -0.17
COL28A1-203ENST00000435823 HHIPL1Q96JK4 782 aa14.01□□□□□ -0.17
COL28A1-203ENST00000435823 LRRCC1Q9C099 1032 aa14.01□□□□□ -0.17
COL28A1-203ENST00000435823 BCL11AQ9H165 835 aa14.01□□□□□ -0.17
COL28A1-203ENST00000435823 SUPT16HQ9Y5B9 1047 aaKnown RBP14.01□□□□□ -0.17
COL28A1-203ENST00000435823 VEGFBP49765 207 aa14□□□□□ -0.17
COL28A1-203ENST00000435823 GSTO1P78417 241 aa14□□□□□ -0.17
COL28A1-203ENST00000435823 TTLL12Q14166 644 aaPredicted RBP14□□□□□ -0.17
COL28A1-203ENST00000435823 DIXDC1Q155Q3 683 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms