RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 RSPH14Q9UHP6 348 aa17.36■□□□□ 0.37
PTPRF-206ENST00000429895 UAP1Q16222 522 aaPredicted RBP17.35■□□□□ 0.37
PTPRF-206ENST00000429895 CREB3L3Q68CJ9 461 aa17.35■□□□□ 0.37
PTPRF-206ENST00000429895 TEX11Q8IYF3 940 aa17.35■□□□□ 0.37
PTPRF-206ENST00000429895 VWA3AA6NCI4 1184 aa17.35■□□□□ 0.37
PTPRF-206ENST00000429895 KRT86O43790 486 aa17.35■□□□□ 0.37
PTPRF-206ENST00000429895 BICC1Q9H694 974 aaKnown RBP17.35■□□□□ 0.37
PTPRF-206ENST00000429895 FANCAO15360 1455 aa17.35■□□□□ 0.37
PTPRF-206ENST00000429895 PRXQ9BXM0 1461 aa17.35■□□□□ 0.37
PTPRF-206ENST00000429895 FNBP1Q96RU3 617 aa17.35■□□□□ 0.37
PTPRF-206ENST00000429895 TOP2BQ02880 1626 aa17.35■□□□□ 0.37
PTPRF-206ENST00000429895 DNAJC21Q5F1R6 531 aaKnown RBP17.35■□□□□ 0.37
PTPRF-206ENST00000429895 FAM200AQ8TCP9 573 aa17.35■□□□□ 0.37
PTPRF-206ENST00000429895 AK2P54819 239 aa17.35■□□□□ 0.37
PTPRF-206ENST00000429895 TPD52P55327 224 aaPredicted RBP17.35■□□□□ 0.37
PTPRF-206ENST00000429895 PPP1R21Q6ZMI0 780 aa17.35■□□□□ 0.37
PTPRF-206ENST00000429895 TMOD4Q9NZQ9 345 aa17.35■□□□□ 0.37
PTPRF-206ENST00000429895 MSL1Q68DK7 614 aa17.34■□□□□ 0.37
PTPRF-206ENST00000429895 STMN4Q9H169 189 aaPredicted RBP17.34■□□□□ 0.37
PTPRF-206ENST00000429895 ARFGAP3Q9NP61 516 aa17.34■□□□□ 0.37
PTPRF-206ENST00000429895 HDAC1Q13547 482 aaPredicted RBP17.34■□□□□ 0.37
PTPRF-206ENST00000429895 ZNF569Q5MCW4 686 aa17.34■□□□□ 0.37
PTPRF-206ENST00000429895 UIMC1Q96RL1 719 aa17.34■□□□□ 0.37
PTPRF-206ENST00000429895 FRMD4BQ9Y2L6 1034 aa17.34■□□□□ 0.37
PTPRF-206ENST00000429895 KRT24Q2M2I5 525 aa17.34■□□□□ 0.37
PTPRF-206ENST00000429895 MAEAQ7L5Y9 396 aa17.34■□□□□ 0.37
PTPRF-206ENST00000429895 SMC1BQ8NDV3 1235 aa17.34■□□□□ 0.37
PTPRF-206ENST00000429895 AGTPBP1Q9UPW5 1226 aa17.34■□□□□ 0.37
PTPRF-206ENST00000429895 ANAPC4Q9UJX5 808 aa17.34■□□□□ 0.37
PTPRF-206ENST00000429895 DDX39AO00148 427 aaKnown RBP17.34■□□□□ 0.37
PTPRF-206ENST00000429895 ZWINTO95229 277 aa17.34■□□□□ 0.37
PTPRF-206ENST00000429895 CCDC65Q8IXS2 484 aa17.34■□□□□ 0.37
PTPRF-206ENST00000429895 CTNND2Q9UQB3 1225 aa17.34■□□□□ 0.37
PTPRF-206ENST00000429895 OPA1O60313 960 aa17.33■□□□□ 0.37
PTPRF-206ENST00000429895 CFAP157Q5JU67 520 aa17.33■□□□□ 0.37
PTPRF-206ENST00000429895 ARHGAP45Q92619 1136 aa17.33■□□□□ 0.37
PTPRF-206ENST00000429895 HAUS7Q99871 368 aa17.33■□□□□ 0.37
PTPRF-206ENST00000429895 PCDHB15Q9Y5E8 787 aa17.33■□□□□ 0.37
PTPRF-206ENST00000429895 CCT6AP40227 531 aaKnown RBP17.33■□□□□ 0.37
PTPRF-206ENST00000429895 WDR44Q5JSH3 913 aa17.33■□□□□ 0.37
PTPRF-206ENST00000429895 RHOXF2BP0C7M4 288 aa17.33■□□□□ 0.36
PTPRF-206ENST00000429895 MYCLP12524 364 aaPredicted RBP17.33■□□□□ 0.36
PTPRF-206ENST00000429895 RHOXF2Q9BQY4 288 aa17.33■□□□□ 0.36
PTPRF-206ENST00000429895 DNMBPQ6XZF7 1577 aa17.33■□□□□ 0.36
PTPRF-206ENST00000429895 KIFC2Q96AC6 838 aa17.33■□□□□ 0.36
PTPRF-206ENST00000429895 MRRFQ96E11 262 aaKnown RBP17.33■□□□□ 0.36
PTPRF-206ENST00000429895 CNBD1Q8NA66 436 aa17.33■□□□□ 0.36
PTPRF-206ENST00000429895 SLU7O95391 586 aaKnown RBP17.32■□□□□ 0.36
PTPRF-206ENST00000429895 ATP2A2P16615 1042 aaKnown RBP17.32■□□□□ 0.36
PTPRF-206ENST00000429895 SV2BQ7L1I2 683 aa17.32■□□□□ 0.36
PTPRF-206ENST00000429895 FNBP4Q8N3X1 1017 aaPredicted RBP17.32■□□□□ 0.36
PTPRF-206ENST00000429895 LEO1Q8WVC0 666 aaPredicted RBP17.32■□□□□ 0.36
PTPRF-206ENST00000429895 MNAT1P51948 309 aa17.32■□□□□ 0.36
PTPRF-206ENST00000429895 TTC6Q86TZ1 520 aa17.32■□□□□ 0.36
PTPRF-206ENST00000429895 PLCH2O75038 1416 aa17.32■□□□□ 0.36
PTPRF-206ENST00000429895 IRX5P78411 483 aaPredicted RBP17.32■□□□□ 0.36
PTPRF-206ENST00000429895 CCDC14Q49A88 953 aa17.32■□□□□ 0.36
PTPRF-206ENST00000429895 RBM28Q9NW13 759 aaKnown RBP17.32■□□□□ 0.36
PTPRF-206ENST00000429895 IFNKQ9P0W0 207 aa17.32■□□□□ 0.36
PTPRF-206ENST00000429895 ZHX1Q9UKY1 873 aaPredicted RBP17.32■□□□□ 0.36
PTPRF-206ENST00000429895 TYRO3Q06418 890 aa17.32■□□□□ 0.36
PTPRF-206ENST00000429895 NOLC1Q14978 699 aaKnown RBP eCLIP17.32■□□□□ 0.361e-6■■□□□ 11.5
PTPRF-206ENST00000429895 GEN1Q17RS7 908 aa17.32■□□□□ 0.36
PTPRF-206ENST00000429895 TRAF5O00463 557 aa17.31■□□□□ 0.36
PTPRF-206ENST00000429895 GAS8O95995 478 aa17.31■□□□□ 0.36
PTPRF-206ENST00000429895 LINS1Q8NG48 757 aa17.31■□□□□ 0.36
PTPRF-206ENST00000429895 KIAA1524Q8TCG1 905 aa17.31■□□□□ 0.36
PTPRF-206ENST00000429895 CRCPO75575 148 aa17.31■□□□□ 0.36
PTPRF-206ENST00000429895 EPB41P11171 864 aaKnown RBP17.31■□□□□ 0.36
PTPRF-206ENST00000429895 GOLGA1Q92805 767 aa17.31■□□□□ 0.36
PTPRF-206ENST00000429895 ARMT1Q9H993 441 aa17.31■□□□□ 0.36
PTPRF-206ENST00000429895 GPHNQ9NQX3 736 aaPredicted RBP17.31■□□□□ 0.36
PTPRF-206ENST00000429895 BTG4Q9NY30 223 aa17.31■□□□□ 0.36
PTPRF-206ENST00000429895 CCNT1O60563 726 aaKnown RBP17.31■□□□□ 0.36
PTPRF-206ENST00000429895 SEL1L2Q5TEA6 688 aa17.31■□□□□ 0.36
PTPRF-206ENST00000429895 FAM89AQ96GI7 184 aa17.31■□□□□ 0.36
PTPRF-206ENST00000429895 ANKS4BQ8N8V4 417 aa17.31■□□□□ 0.36
PTPRF-206ENST00000429895 SH2D4AQ9H788 454 aa17.31■□□□□ 0.36
PTPRF-206ENST00000429895 DENND2AQ9ULE3 1009 aa17.31■□□□□ 0.36
PTPRF-206ENST00000429895 E7EVH7 732 aa17.3■□□□□ 0.36
PTPRF-206ENST00000429895 HSPA2P54652 639 aa17.3■□□□□ 0.36
PTPRF-206ENST00000429895 UBLCP1Q8WVY7 318 aaPredicted RBP17.3■□□□□ 0.36
PTPRF-206ENST00000429895 TNNQ9UQP3 1299 aa17.3■□□□□ 0.36
PTPRF-206ENST00000429895 B4E1Z4 1266 aa17.3■□□□□ 0.36
PTPRF-206ENST00000429895 TTC14Q96N46 770 aa17.3■□□□□ 0.36
PTPRF-206ENST00000429895 NCKAP5LQ9HCH0 1330 aa17.3■□□□□ 0.36
PTPRF-206ENST00000429895 RUFY3Q7L099 469 aa17.3■□□□□ 0.36
PTPRF-206ENST00000429895 CCDC24Q8N4L8 307 aa17.3■□□□□ 0.36
PTPRF-206ENST00000429895 ZEB2O60315 1214 aa17.3■□□□□ 0.36
PTPRF-206ENST00000429895 STX10O60499 249 aa17.3■□□□□ 0.36
PTPRF-206ENST00000429895 CFAP57Q96MR6 1250 aa17.3■□□□□ 0.36
PTPRF-206ENST00000429895 SEC62Q99442 399 aaKnown RBP17.3■□□□□ 0.36
PTPRF-206ENST00000429895 TTC41PQ6P2S7 1318 aa17.3■□□□□ 0.36
PTPRF-206ENST00000429895 RPL13P26373 211 aaKnown RBP17.3■□□□□ 0.36
PTPRF-206ENST00000429895 PFDN4Q9NQP4 134 aa17.3■□□□□ 0.36
PTPRF-206ENST00000429895 DHX32Q7L7V1 743 aaKnown RBP17.29■□□□□ 0.36
PTPRF-206ENST00000429895 TSPYL6Q8N831 410 aa17.29■□□□□ 0.36
PTPRF-206ENST00000429895 CCNL1Q9UK58 526 aaPredicted RBP17.29■□□□□ 0.36
PTPRF-206ENST00000429895 NOP56O00567 594 aaKnown RBP17.29■□□□□ 0.36
PTPRF-206ENST00000429895 CCT6BQ92526 530 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms