RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 CDC27P30260 824 aa9.81□□□□□ -0.84
CD44-208ENST00000428726 GUCY1A2P33402 732 aa9.81□□□□□ -0.84
CD44-208ENST00000428726 CHRNDQ07001 517 aa9.81□□□□□ -0.84
CD44-208ENST00000428726 ANKRD1Q15327 319 aa9.81□□□□□ -0.84
CD44-208ENST00000428726 CCAR1Q8IX12 1150 aaKnown RBP9.81□□□□□ -0.84
CD44-208ENST00000428726 PDILTQ8N807 584 aa9.81□□□□□ -0.84
CD44-208ENST00000428726 CLIC6Q96NY7 704 aa9.81□□□□□ -0.84
CD44-208ENST00000428726 NBPF3Q9H094 633 aa9.81□□□□□ -0.84
CD44-208ENST00000428726 KCPQ6ZWJ8 1503 aa9.81□□□□□ -0.84
CD44-208ENST00000428726 NEDD4P46934 1319 aa9.81□□□□□ -0.84
CD44-208ENST00000428726 JCADQ9P266 1359 aa9.81□□□□□ -0.84
CD44-208ENST00000428726 PAPPAQ13219 1627 aa9.81□□□□□ -0.84
CD44-208ENST00000428726 KIF28PB7ZC32 967 aa9.8□□□□□ -0.84
CD44-208ENST00000428726 PDE8AO60658 829 aa9.8□□□□□ -0.84
CD44-208ENST00000428726 TSGA10IPQ3SY00 556 aa9.8□□□□□ -0.84
CD44-208ENST00000428726 TBC1D9BQ66K14 1250 aa9.8□□□□□ -0.84
CD44-208ENST00000428726 TMEM87AQ8NBN3 555 aa9.8□□□□□ -0.84
CD44-208ENST00000428726 LINC00116Q8NCU8 138 aa9.8□□□□□ -0.84
CD44-208ENST00000428726 UTP14AQ9BVJ6 771 aaKnown RBP9.8□□□□□ -0.84
CD44-208ENST00000428726 NAPBQ9H115 298 aa9.8□□□□□ -0.84
CD44-208ENST00000428726 SLC4A4Q9Y6R1 1079 aa9.8□□□□□ -0.84
CD44-208ENST00000428726 NUP188Q5SRE5 1749 aa9.8□□□□□ -0.84
CD44-208ENST00000428726 IGSF3O75054 1194 aa9.8□□□□□ -0.84
CD44-208ENST00000428726 TRDNQ13061 729 aa9.8□□□□□ -0.84
CD44-208ENST00000428726 OLFM4Q6UX06 510 aa9.8□□□□□ -0.84
CD44-208ENST00000428726 SPATA5Q8NB90 893 aa9.8□□□□□ -0.84
CD44-208ENST00000428726 ALDH8A1Q9H2A2 487 aaPredicted RBP9.8□□□□□ -0.84
CD44-208ENST00000428726 AKAP2Q9Y2D5 859 aa9.8□□□□□ -0.84
CD44-208ENST00000428726 SH3TC1Q8TE82 1336 aa9.8□□□□□ -0.84
CD44-208ENST00000428726 CYP7A1P22680 504 aa9.8□□□□□ -0.84
CD44-208ENST00000428726 FAM47AQ5JRC9 791 aa9.8□□□□□ -0.84
CD44-208ENST00000428726 FILIP1Q7Z7B0 1213 aa9.8□□□□□ -0.84
CD44-208ENST00000428726 CREBRFQ8IUR6 639 aa9.8□□□□□ -0.84
CD44-208ENST00000428726 SLC26A6Q9BXS9 759 aa9.8□□□□□ -0.84
CD44-208ENST00000428726 GPR108Q9NPR9 543 aa9.8□□□□□ -0.84
CD44-208ENST00000428726 TNS2Q63HR2 1409 aa9.79□□□□□ -0.84
CD44-208ENST00000428726 ABCA3Q99758 1704 aa9.79□□□□□ -0.84
CD44-208ENST00000428726 IFIT3O14879 490 aaKnown RBP9.79□□□□□ -0.84
CD44-208ENST00000428726 RANBP6O60518 1105 aaKnown RBP9.79□□□□□ -0.84
CD44-208ENST00000428726 OFD1O75665 1012 aa9.79□□□□□ -0.84
CD44-208ENST00000428726 KRT32Q14532 448 aa9.79□□□□□ -0.84
CD44-208ENST00000428726 RASGRP2Q7LDG7 609 aa9.79□□□□□ -0.84
CD44-208ENST00000428726 TICAM2Q86XR7 235 aa9.79□□□□□ -0.84
CD44-208ENST00000428726 FSIP1Q8NA03 581 aa9.79□□□□□ -0.84
CD44-208ENST00000428726 C8orf76Q96K31 380 aa9.79□□□□□ -0.84
CD44-208ENST00000428726 SDF4Q9BRK5 362 aa9.79□□□□□ -0.84
CD44-208ENST00000428726 TRIM5Q9C035 493 aa9.79□□□□□ -0.84
CD44-208ENST00000428726 EPB41L4AQ9HCS5 686 aaPredicted RBP9.79□□□□□ -0.84
CD44-208ENST00000428726 ZSWIM5Q9P217 1185 aa9.79□□□□□ -0.84
CD44-208ENST00000428726 TYRO3Q06418 890 aa9.79□□□□□ -0.84
CD44-208ENST00000428726 TMEM67Q5HYA8 995 aa9.79□□□□□ -0.84
CD44-208ENST00000428726 C11orf57Q6ZUT1 292 aaPredicted RBP9.79□□□□□ -0.84
CD44-208ENST00000428726 APPBP2Q92624 585 aa9.79□□□□□ -0.84
CD44-208ENST00000428726 CPVLQ9H3G5 476 aa9.79□□□□□ -0.84
CD44-208ENST00000428726 STRCQ7RTU9 1775 aa9.79□□□□□ -0.84
CD44-208ENST00000428726 F8W031 263 aaPredicted RBP9.78□□□□□ -0.84
CD44-208ENST00000428726 CSF1RP07333 972 aa9.78□□□□□ -0.84
CD44-208ENST00000428726 CYP2D6P10635 497 aa9.78□□□□□ -0.84
CD44-208ENST00000428726 PTGS1P23219 599 aa9.78□□□□□ -0.84
CD44-208ENST00000428726 IGHMBP2P38935 993 aaKnown RBP9.78□□□□□ -0.84
CD44-208ENST00000428726 IL6STP40189 918 aaPredicted RBP9.78□□□□□ -0.84
CD44-208ENST00000428726 RESTQ13127 1097 aa9.78□□□□□ -0.84
CD44-208ENST00000428726 ZRSR1Q15695 479 aaKnown RBP9.78□□□□□ -0.84
CD44-208ENST00000428726 CSPP1Q1MSJ5 1256 aa9.78□□□□□ -0.84
CD44-208ENST00000428726 ILDR1Q86SU0 546 aaPredicted RBP9.78□□□□□ -0.84
CD44-208ENST00000428726 PIAS4Q8N2W9 510 aaPredicted RBP9.78□□□□□ -0.84
CD44-208ENST00000428726 STAMQ92783 540 aa9.78□□□□□ -0.84
CD44-208ENST00000428726 AATFQ9NY61 560 aaKnown RBP eCLIP9.78□□□□□ -0.84
CD44-208ENST00000428726 SHANK3Q9BYB0 1731 aa9.78□□□□□ -0.84
CD44-208ENST00000428726 FAM205CA6NFA0 338 aa9.78□□□□□ -0.84
CD44-208ENST00000428726 GOLGA8FQ08AF8 430 aa9.78□□□□□ -0.84
CD44-208ENST00000428726 GOLGA8DPQ0D2H9 430 aa9.78□□□□□ -0.84
CD44-208ENST00000428726 STK38Q15208 465 aa9.78□□□□□ -0.84
CD44-208ENST00000428726 MAP3K11Q16584 847 aa9.78□□□□□ -0.84
CD44-208ENST00000428726 NOM1Q5C9Z4 860 aaKnown RBP9.78□□□□□ -0.84
CD44-208ENST00000428726 TEX13AQ9BXU3 409 aaPredicted RBP9.78□□□□□ -0.84
CD44-208ENST00000428726 HELLSQ9NRZ9 838 aa9.78□□□□□ -0.84
CD44-208ENST00000428726 TJP1Q07157 1748 aa9.78□□□□□ -0.84
CD44-208ENST00000428726 CASP1P29466 404 aa9.77□□□□□ -0.84
CD44-208ENST00000428726 ADD2P35612 726 aa9.77□□□□□ -0.84
CD44-208ENST00000428726 EIF5P55010 431 aaKnown RBP9.77□□□□□ -0.84
CD44-208ENST00000428726 EXOSC10Q01780 885 aaKnown RBP9.77□□□□□ -0.84
CD44-208ENST00000428726 MEX3CQ5U5Q3 659 aaKnown RBP9.77□□□□□ -0.84
CD44-208ENST00000428726 ZNF592Q92610 1267 aa9.77□□□□□ -0.84
CD44-208ENST00000428726 PYCARDQ9ULZ3 195 aa9.77□□□□□ -0.84
CD44-208ENST00000428726 NOL7Q9UMY1 257 aaKnown RBP9.77□□□□□ -0.84
CD44-208ENST00000428726 RAD21O60216 631 aa9.77□□□□□ -0.85
CD44-208ENST00000428726 CIAO1O76071 339 aa9.77□□□□□ -0.85
CD44-208ENST00000428726 CAMTA2O94983 1202 aa9.77□□□□□ -0.85
CD44-208ENST00000428726 VEGFAP15692 232 aaPredicted RBP9.77□□□□□ -0.85
CD44-208ENST00000428726 PRDX5P30044 214 aa9.77□□□□□ -0.85
CD44-208ENST00000428726 MCM5P33992 734 aa9.77□□□□□ -0.85
CD44-208ENST00000428726 NR5A1Q13285 461 aa9.77□□□□□ -0.85
CD44-208ENST00000428726 GRAMD1CQ8IYS0 662 aa9.77□□□□□ -0.85
CD44-208ENST00000428726 NCOA7Q8NI08 942 aa9.77□□□□□ -0.85
CD44-208ENST00000428726 TMX1Q9H3N1 280 aa9.77□□□□□ -0.85
CD44-208ENST00000428726 CBX8Q9HC52 389 aa9.77□□□□□ -0.85
CD44-208ENST00000428726 HPS5Q9UPZ3 1129 aa9.77□□□□□ -0.85
CD44-208ENST00000428726 ZKSCAN5Q9Y2L8 839 aa9.77□□□□□ -0.85
CD44-208ENST00000428726 PDCP20941 246 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms