RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 SYNE4Q8N205 404 aa12.29□□□□□ -0.44
TCOF1-204ENST00000427724 NCOA7Q8NI08 942 aa12.29□□□□□ -0.44
TCOF1-204ENST00000427724 LRRC2Q9BYS8 371 aa12.29□□□□□ -0.44
TCOF1-204ENST00000427724 ARMT1Q9H993 441 aa12.29□□□□□ -0.44
TCOF1-204ENST00000427724 BMP2KQ9NSY1 1161 aaPredicted RBP12.29□□□□□ -0.44
TCOF1-204ENST00000427724 CEP152O94986 1710 aa12.29□□□□□ -0.44
TCOF1-204ENST00000427724 PTPRUQ92729 1446 aa12.29□□□□□ -0.44
TCOF1-204ENST00000427724 CYP19A1P11511 503 aaPredicted RBP12.29□□□□□ -0.44
TCOF1-204ENST00000427724 EPS15P42566 896 aa12.29□□□□□ -0.44
TCOF1-204ENST00000427724 GUCY1B3Q02153 619 aa12.29□□□□□ -0.44
TCOF1-204ENST00000427724 TMC4Q7Z404 712 aa12.29□□□□□ -0.44
TCOF1-204ENST00000427724 CCAR2Q8N163 923 aaKnown RBP12.29□□□□□ -0.44
TCOF1-204ENST00000427724 ANKRD20A12PQ8NF67 263 aa12.29□□□□□ -0.44
TCOF1-204ENST00000427724 NUP62CLQ9H1M0 184 aa12.29□□□□□ -0.44
TCOF1-204ENST00000427724 ARHGEF10LQ9HCE6 1279 aa12.29□□□□□ -0.44
TCOF1-204ENST00000427724 KINO60870 393 aaKnown RBP12.29□□□□□ -0.44
TCOF1-204ENST00000427724 PPP4R3AQ6IN85 833 aa12.29□□□□□ -0.44
TCOF1-204ENST00000427724 SIRT2Q8IXJ6 389 aa12.29□□□□□ -0.44
TCOF1-204ENST00000427724 C2orf69Q8N8R5 385 aa12.29□□□□□ -0.44
TCOF1-204ENST00000427724 SPATA32Q96LK8 384 aa12.29□□□□□ -0.44
TCOF1-204ENST00000427724 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.29□□□□□ -0.44
TCOF1-204ENST00000427724 CNPY2Q9Y2B0 182 aa12.29□□□□□ -0.44
TCOF1-204ENST00000427724 KIF24Q5T7B8 1368 aa12.29□□□□□ -0.44
TCOF1-204ENST00000427724 ARMC9Q7Z3E5 817 aa12.28□□□□□ -0.44
TCOF1-204ENST00000427724 WASF1Q92558 559 aa12.28□□□□□ -0.44
TCOF1-204ENST00000427724 SLC10A4Q96EP9 437 aa12.28□□□□□ -0.44
TCOF1-204ENST00000427724 ZSCAN31Q96LW9 406 aaPredicted RBP12.28□□□□□ -0.44
TCOF1-204ENST00000427724 COL15A1P39059 1388 aa12.28□□□□□ -0.44
TCOF1-204ENST00000427724 ME1P48163 572 aa12.28□□□□□ -0.44
TCOF1-204ENST00000427724 LRRC24Q50LG9 513 aa12.28□□□□□ -0.44
TCOF1-204ENST00000427724 TNNI3KQ59H18 835 aa12.28□□□□□ -0.44
TCOF1-204ENST00000427724 FNBP4Q8N3X1 1017 aaPredicted RBP12.28□□□□□ -0.44
TCOF1-204ENST00000427724 FPGT-TNNI3KV9GXZ4 949 aa12.28□□□□□ -0.44
TCOF1-204ENST00000427724 CHMLP26374 656 aa12.28□□□□□ -0.44
TCOF1-204ENST00000427724 GRAPQ13588 217 aa12.28□□□□□ -0.44
TCOF1-204ENST00000427724 AOC3Q16853 763 aa12.28□□□□□ -0.44
TCOF1-204ENST00000427724 NSMFQ6X4W1 530 aa12.28□□□□□ -0.44
TCOF1-204ENST00000427724 GRAPLQ8TC17 118 aaPredicted RBP12.28□□□□□ -0.44
TCOF1-204ENST00000427724 LEMD3Q9Y2U8 911 aa12.28□□□□□ -0.44
TCOF1-204ENST00000427724 PTCH1Q13635 1447 aa12.28□□□□□ -0.44
TCOF1-204ENST00000427724 IQCA1LA6NCM1 817 aa12.28□□□□□ -0.44
TCOF1-204ENST00000427724 GJB2P29033 226 aa12.28□□□□□ -0.44
TCOF1-204ENST00000427724 ARHGEF6Q15052 776 aa12.28□□□□□ -0.44
TCOF1-204ENST00000427724 MCMDC2Q4G0Z9 681 aa12.28□□□□□ -0.44
TCOF1-204ENST00000427724 GIMAP6Q6P9H5 292 aa12.28□□□□□ -0.44
TCOF1-204ENST00000427724 SMAP1Q8IYB5 467 aaPredicted RBP12.28□□□□□ -0.44
TCOF1-204ENST00000427724 SPATA5Q8NB90 893 aa12.28□□□□□ -0.44
TCOF1-204ENST00000427724 GPHNQ9NQX3 736 aaPredicted RBP12.28□□□□□ -0.44
TCOF1-204ENST00000427724 HOMER2Q9NSB8 354 aa12.28□□□□□ -0.44
TCOF1-204ENST00000427724 RNF113AO15541 343 aaKnown RBP12.27□□□□□ -0.44
TCOF1-204ENST00000427724 ADCY5O95622 1261 aa12.27□□□□□ -0.44
TCOF1-204ENST00000427724 DPEP1P16444 411 aa12.27□□□□□ -0.44
TCOF1-204ENST00000427724 NECAB1Q8N987 351 aa12.27□□□□□ -0.44
TCOF1-204ENST00000427724 SMARCC2Q8TAQ2 1214 aa12.27□□□□□ -0.44
TCOF1-204ENST00000427724 TSC1Q92574 1164 aa12.27□□□□□ -0.44
TCOF1-204ENST00000427724 BRIP1Q9BX63 1249 aa12.27□□□□□ -0.44
TCOF1-204ENST00000427724 PUS3Q9BZE2 481 aaKnown RBP12.27□□□□□ -0.44
TCOF1-204ENST00000427724 TFIP11Q9UBB9 837 aaKnown RBP12.27□□□□□ -0.44
TCOF1-204ENST00000427724 CCDC112Q8NEF3 446 aa12.27□□□□□ -0.45
TCOF1-204ENST00000427724 CCDC94Q9BW85 323 aaPredicted RBP12.27□□□□□ -0.45
TCOF1-204ENST00000427724 LMBRD1Q9NUN5 540 aa12.27□□□□□ -0.45
TCOF1-204ENST00000427724 USP17L8P0C7I0 530 aa12.27□□□□□ -0.45
TCOF1-204ENST00000427724 ZAP70P43403 619 aa12.27□□□□□ -0.45
TCOF1-204ENST00000427724 GPCPD1Q9NPB8 672 aa12.27□□□□□ -0.45
TCOF1-204ENST00000427724 PNMA6EA0A0J9YXQ4 647 aa12.26□□□□□ -0.45
TCOF1-204ENST00000427724 KIDINS220Q9ULH0 1771 aa12.26□□□□□ -0.45
TCOF1-204ENST00000427724 IQSEC2Q5JU85 1478 aa12.26□□□□□ -0.45
TCOF1-204ENST00000427724 CPA1P15085 419 aa12.26□□□□□ -0.45
TCOF1-204ENST00000427724 GNAT2P19087 354 aa12.26□□□□□ -0.45
TCOF1-204ENST00000427724 TRAF1Q13077 416 aa12.26□□□□□ -0.45
TCOF1-204ENST00000427724 MAP3K11Q16584 847 aa12.26□□□□□ -0.45
TCOF1-204ENST00000427724 ZKSCAN3Q9BRR0 538 aa12.26□□□□□ -0.45
TCOF1-204ENST00000427724 KRT23Q9C075 422 aa12.26□□□□□ -0.45
TCOF1-204ENST00000427724 TPM3P06753 285 aa12.26□□□□□ -0.45
TCOF1-204ENST00000427724 MCM5P33992 734 aa12.26□□□□□ -0.45
TCOF1-204ENST00000427724 TTC12Q9H892 705 aaPredicted RBP12.26□□□□□ -0.45
TCOF1-204ENST00000427724 USP17L3A6NCW0 530 aa12.25□□□□□ -0.45
TCOF1-204ENST00000427724 USP17L4A6NCW7 530 aa12.25□□□□□ -0.45
TCOF1-204ENST00000427724 ANAPC15P60006 121 aa12.25□□□□□ -0.45
TCOF1-204ENST00000427724 TEX35Q5T0J7 233 aa12.25□□□□□ -0.45
TCOF1-204ENST00000427724 CHST3Q7LGC8 479 aa12.25□□□□□ -0.45
TCOF1-204ENST00000427724 USP17L1Q7RTZ2 530 aa12.25□□□□□ -0.45
TCOF1-204ENST00000427724 JMYQ8N9B5 988 aa12.25□□□□□ -0.45
TCOF1-204ENST00000427724 LINC00116Q8NCU8 138 aa12.25□□□□□ -0.45
TCOF1-204ENST00000427724 IARSP41252 1262 aaKnown RBP12.25□□□□□ -0.45
TCOF1-204ENST00000427724 ANGEL1Q9UNK9 670 aaKnown RBP12.25□□□□□ -0.45
TCOF1-204ENST00000427724 CDC42BPGQ6DT37 1551 aa12.25□□□□□ -0.45
TCOF1-204ENST00000427724 ZSCAN22P10073 491 aaPredicted RBP12.25□□□□□ -0.45
TCOF1-204ENST00000427724 HEATR3Q7Z4Q2 680 aa12.25□□□□□ -0.45
TCOF1-204ENST00000427724 COL23A1Q86Y22 540 aaPredicted RBP12.25□□□□□ -0.45
TCOF1-204ENST00000427724 E9PCH4 1651 aa12.25□□□□□ -0.45
TCOF1-204ENST00000427724 YY1P25490 414 aa12.25□□□□□ -0.45
TCOF1-204ENST00000427724 UBE4AQ14139 1066 aa12.25□□□□□ -0.45
TCOF1-204ENST00000427724 ZFYVE27Q5T4F4 411 aa12.25□□□□□ -0.45
TCOF1-204ENST00000427724 KRT26Q7Z3Y9 468 aa12.25□□□□□ -0.45
TCOF1-204ENST00000427724 FCHSD1Q86WN1 690 aa12.25□□□□□ -0.45
TCOF1-204ENST00000427724 CCDC12Q8WUD4 166 aaPredicted RBP12.25□□□□□ -0.45
TCOF1-204ENST00000427724 TULP4Q9NRJ4 1543 aa12.24□□□□□ -0.45
TCOF1-204ENST00000427724 HMGB1P09429 215 aaKnown RBP12.24□□□□□ -0.45
TCOF1-204ENST00000427724 SSRP1Q08945 709 aaKnown RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 127.7 ms